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* [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]


=== Research Groups ===
=== Research Groups ===

Revisión del 10:08 31 ago 2012

Alex profile.jpg
  • Contact: Alex email.png


Material

Seguimientos

Pedradas

Surveys (wiki under construction)

Friday Sessions



Alexandre Manhães Savio

Studies

  • Information Engineer (October 2006) - University of the Basque Country
  • Currently: PhD Student in the Computational Intelligence Group of the Computer Science and Artificial Intelligence department - University of the Basque Country. Beca de Formación de Personal Investigador del Gobierno Vasco desde Enero del 2010, renovable los 3 años siguientes.


Work Experience

  • February/2008 - December/2009 - Research assistant at the Computational Intelligence Group of the Computer Science and Artificial Intelligence department - University of the Basque Country
MR image processing and application of classification algorithms for the detection of brain neuronal disorders.
  • April/2007 - January/2008 - Software Engineer in InnovaeVision, San Sebastián, Guipúzcoa, Spain.
Java, Spring Framework, Hibernate, C/C++ in GNU/Linux, GTK 2, Cairo graphics, DirectFB
  • July/2004 - April/2007 - Software Engineer in JADE Systems S.L., Zizur Mayor, Navarra, Spain.
C/C++, C++ Borland Builder 6, GUI design, Programming language parser (ANTLR), GNU/Linux Systems administration


Courses

  • July 7th-11th, 2008 - AERFAI Summer School - PRMA'08 - Pattern Recognition for Motion Analysis in the Computer Vision Center of the Universidad Autónoma de Barcelona.
  • May 31st - June 4th, 2010 - FSL Course organised by FMRIB, Oxford, the Martinos Center, MGH and Heidelberg & Würzburg Universities in Heidelberg, Germany.


Internships

  • January 24th - July 31st, 2011 - FMRIB, University of Oxford, UK with Dr. Saad Jbabdi. On ball&stick diffusion models for multishell HARDI and model selection.


Publications

BibTex File

Post-processed datasets from the work done in the group.

2012

- S. Jbabdi, S.N. Sotiropoulos, A.M. Savio, M. Graña, T.E.J. Behrens; Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems, Magnetic Resonance in Medicine - doi: 10.1002/mrm.24204
- A. Bourisly, A. Savio, M. Graña; A Meta-Analysis of FMRI Biomarkers for Alzheimer's Disease. OHBM 2012. June 10-14, 2012 Beijing, China

2011

- A. Savio, A. Bourisly, M. Graña; On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques, ISMRM SCIENTIFIC WORKSHOP: Neuroimaging Biomarkers of Psychiatric Disorders: What are They?. October 13-16, 2011. Montabaur, Germany
- M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga; Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation., Neuroscience letters, Volume 502, Issue 3, September 20, 2011, Pages 225-229 on line, Index of Impact JCR (2010) 2.055
- Alexandre Savio, Manuel Graña, Jorge Villanúa, Deformation based features for Alzheimer's disease detection with linear SVM.; Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011) - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)

2010

- Alexandre Savio, Maria T García-Sebastián, Darya Chyzhyk, Carmen Hernández, Manuel Graña, Andone Sistiaga, Adolfo Lopez de Munain, Jorge Villanúa; Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI, Computers in Biology and Medicine (accepted: CBM-D-10-00306R1), Impact index JCR (2009) 1.269
- Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña; Neural classifiers for schizophrenia diagnostic support on diffusion imaging data; Neural Network World 20(7):935-949 [1].. ISI JCR 2009: 0.475
Data:
- Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain; Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101; 2010, Bentham Science Publishers
- Darya Chyzhyk, Maite Termenón, Alexandre Savio; A Comparison of VBM Results by SPM, ICA and LICA; Hybrid Artificial Intelligence Systems, 5th International Conference / HAIS 2010, San Sebastián, Spain, June 23-25, 2010. Proceedings, Part II; Emilio Corchado and Manuel Graña Romay and Alexandre Manhaes Savio, LNCS 6077, Springer Verlag 2010, pp. 429-435; ISBN: 978-3-642-13802-7; DOI 10.1007/978-3-642-13803-4_53

2009

- Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa; On the use of Morphometry based features for Alzheimer's Disease detection on MRI; Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I); Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964; ISBN 978-3-642-02477-1; DOI 10.1007/978-3-642-02478-8_120
Data:
List of 98 OASIS females
- Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa; Results of an Adaboost approach on Alzheimer's Disease detection on MRI; Methods and Models in Artificial and Natural Computation. / IWINAC 2009 (Part II); José Mira, José Manuel Ferrández, José R. Álvarez, Félix de la Paz, F. Javier Toledo (Editors), LNCS 5602, Springer Verlag 2009, pp. 114-123; ISBN 978-3-642-02266-1; DOI 10.1007/978-3-642-02267-8_13
draft
Data:
List of 98 OASIS females
- Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa; Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection; Intelligent Data Engineering and Automated Learning - IDEAL 2009; LNCS 5788, Springer Verlag 2009, pp. 641-648; ISBN: 978-3-642-04393-2; DOI: 10.1007/978-3-642-04394-9_78
draft
Data:
List of 98 OASIS females

2008

- Maite García-Sebastián, A. M. Savio, M. Graña; Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm; | link; Proceedings CEC 2008, pp.4146-4150; ISBN 978-1-4244-1822-0
- Alexandre Manhaes Savio; Capítulo de libro en las Actas de las II Jornadas de Inteligencia Computacional - JIC'08; Ramón Moreno Jiménez, Alexandre Manhaes Savio (Editors); Servicio editorial de la UPV/EHU; :ISBN 978-84-296-2316-1
slides_book


Projects

SAIOTEK 2009

SAIOTEK 2008

  • Desarrollo de métodos y técnicas de análisis de imagen de resonancia magnética cerebral en el ámbito del software libre para estudio de enfermedades neurodegenerativas (BRAINER) [2]
  • Investigadora principal: Carmen Hernandez Gomez
  • Entidades: Ciencias de la Computación e Inteligencia Artificial (UPV/EHU), Fundación Vasca de Innovación e Investigación Sanitaria/B+I+O (Eusko Fundazioa), Departamento de Neurociencia (UPV/EHU)
  • Año Solicitud: 2.008 Fecha entrada: 19/02/09

Programa "Red guipuzcoana de Ciencia, Tecnología e Innovación" Gipuzkoako Foru Aldundia/Diputación Foral de Guipúzcoa

SAIOTEK 2007

  • Desarrollo de técnicas de análisis de imágenes de Resonancia Magnética con aplicación en el diagnóstico preclínico de la enfermedad de Alzheimer [4], [5]
  • Referencia: S-PR07UN02
  • Investigadora principal: Maite García-Sebastián
  • Entidades participantes: UPV/EHU-Departamento de CCIA, Osatek-Gipuzkoa.
  • Duración: 2 años
  • Otros proyectos del grupo [6]


Research Areas

  • Pattern recognition applied to medical images
  • Brain medical image processing
  • Gesture recognition systems


Research Questions

  • How does the multivariate tensor analysis work using all the deformation tensor information?
  • Is there any SOM-based framework for diffusion data modelling?
  • Any application of Lattice-Computing on Probabilistic Tractography?


Pending Tasks

  • ITK, ANTS...
  • OpenMP and MPI
  • Multivariate Analysis
  • Meditate
  • DTI modeling
  • Process Ann's DTI dataset
  • Add MRI and ML related info pages with literature reviews on this wiki.


articulos de revistas en proceso de redacción

  • TBM y Oasis
  • Sampling approaches using DTI models

conferencias en el horno

Conferences

"I love deadlines. I especially like the whooshing sound they make as they go flying by." - Douglas Adams


Coming...




Current readings

Books

  @book{mcconnell_applications_1960,
        title = {Applications of Tensor Analysis},
        isbn = {0486603733},
        publisher = {Dover Publications},
        author = {A. J. {McConnell}},
        month = jun,
        year = {1960}
       }

Working articles


Congresos y revistas objetivo

Revistas (ordenadas por factor de impacto)

1- Journal of Magnetic Resonance Imaging

2- Medical Image Analysis

3- IEEE Transactions on Medical Imaging

4- Magnetic Resonance in Medicine

Otras revistas

Congresos

  • More conferences: [8]


Internet Bookmarks

Courses

Databases

Research Groups


Utilities

Scientific Writing

Computer Settings

  • Install ITK and Kitware software from sources. [9] [10] (for more information ask me)

Image Processing

Pattern Recognition

Real World


Estado burocrático de la tesis

Director
Manuel Graña
Trabajo de investigación aprobado.
Contratos durante los años 2008 y 2009
Beca de Formación de Personal Investigador del Gobierno Vasco para los 4 años a partir del 2010.


Working Diaries

Pedradas de Alex
Seguimientos
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