General information

MetAMOS represents a focused effort to create automated, reproducible, traceable assembly & analysis infused with current best practices and state-of-the-art methods. MetAMOS for input can start with next-generation sequencing reads or assemblies, and as output, produces: assembly reports, genomic scaffolds, open-reading frames, variant motifs, taxonomic or functional annotations, Krona charts and HTML report. 1.5rc3 version.

How to use

To send a job to the queue system there is the

send_metamos

command where you answer a few questions to set up the job. Take into account that MetAMOS use a lot of RAM memory, about 1 GB per million reads.

More information

MetAMOS web page.