Informazio orokorra

SPAdes 3.6.0 – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio, Oxford Nanopore and Sanger reads. You can also provide additional contigs that will be used as long reads. Supports paired-end reads, mate-pairs and unpaired reads. SPAdes can take as input several paired-end and mate-pair libraries simultaneously. Note, that SPAdes was initially designed for small genomes. It was tested on single-cell and standard bacterial and fungal data sets.

Nola erabili

Kalkuluak bidaltzeko koletara

send_spades

komandoa erabili daiteke, honek galdera batzuk erantzutez kalkulua konfiguratuko du.

Errendimendua

Ez da neurtu inongo hobekuntzarik hainbat koreak erabiliz kalkulu normal batean, mota henetakoa:

spades.py -pe1-1 file1 -pe1-2 file2 -o outdir

Kore bakarra erabiltzea gomendatzen dugu, errendimendu hobea lortuko dela jakin ezik kore gehiago erabiliz gero.

Informazio gehiago

SPAdes web orrialdea.