|
|
| Línea 73: |
Línea 73: |
|
| |
|
| == Pending Tasks == | | == Pending Tasks == |
| * ITK, ANTS... | | * Save the world |
| * OpenMP and MPI
| |
| * Multivariate Analysis
| |
| * [https://www.nmr.mgh.harvard.edu/~lazar/ Meditate]
| |
| * DTI modeling
| |
| * Process Ann's DTI dataset
| |
| * Add MRI and ML related info pages with literature reviews on this wiki.
| |
| | |
| <br/>
| |
| | |
| == Conferences ==
| |
| | |
| | |
| <br/>
| |
| | |
| | |
| <br/>
| |
| | |
| | |
| === Databases ===
| |
| | |
| BRAIN IMAGES
| |
| | |
| * [http://www.oasis-brains.org OASIS]
| |
| | |
| * [http://fcon_1000.projects.nitrc.org/index.html INDI - 1000 Functional Connectomes Project]
| |
| | |
| * [http://adni.loni.ucla.edu/ ADNI]
| |
| | |
| * [http://www.nitrc.org/projects/brainmap BrainMap]
| |
| | |
| * [http://rad.med.hokudai.ac.jp/research/fa/index_e.php Fractional Anisotropy Database]
| |
| | |
| * [http://insight-journal.org/midas MIDAS]
| |
| | |
| * [http://www.childmind.org/en/healthy-brain-network/abide/ ABIDE]
| |
| | |
| * [http://fcon_1000.projects.nitrc.org/indi/retro/cobre.html COBRE-Schizophrenia]
| |
| | |
| PROSTATE
| |
| | |
| OTHER
| |
| | |
| === Research Groups ===
| |
| | |
| * [http://www.fmrib.ox.ac.uk/ Oxford Centre for Functional MRI of the Brain] - University of Oxford - JR Hospital - England
| |
| | |
| * [http://cmic.cs.ucl.ac.uk Centre of Medical Image Computing] - University College London - Gower Street - Eng. Building
| |
| | |
| * [http://dbm.neuro.uni-jena.de Structural Brain Mapping Group] - University of Jena - Thüringen - central Germany
| |
| | |
| * [https://www.rad.upenn.edu/sbia/software/index.html Section of Biomedical Image Analysis] - University of Pennsylvania
| |
| | |
| * [http://www.mpih-frankfurt.mpg.de Max Planck Institute für Hirnforschung]
| |
| | |
| * [http://image.hggm.es/ Laboratorio de Imagen Médica. Unidad de Medicina y Cirugía Experimental] - Hospital General Universitario Gregorio Marañón
| |
| | |
| * [http://www2.bic.mni.mcgill.ca/ McConnell Brain Imaging Centre (BIC) of the Montreal Neurological Institute (MNI)] - McGill University
| |
| | |
| * [http://www.na-mic.org/ National Alliance for Medical Image Computing]
| |
| | |
| * [http://www-sop.inria.fr/asclepios/ Asclepios project] - INRIA Sophia-Antipolis
| |
| | |
| * [http://www-sop.inria.fr/odyssee/en/ ODYSSEE research project-team] - INRIA Sophia-Antipolis
| |
| | |
| * [http://www.mr.ethz.ch/ Divisions of Bioimaging and MRI Technology] - University and ETH Zurich
| |
| | |
| * [http://www.bigr.nl/website/ Biomedical Imaging Group Rotterdam] - Erasmus MC - University Medical Center Rotterdam
| |
| | |
| * [http://mindhive.mit.edu/ A community portal for MIT brain research] - Massachussets Institute of Technology
| |
| | |
| * [http://www.siani.es Instituto Universitario de Sistemas Inteligentes y Aplicaciones Numéricas en Ingeniería] - ULPGC
| |
| | |
| * [http://www.fei.edu.br/~cet/ipl.html Image Processing Lab de la FEI] Sao Bernardo do Campo (SP) - Brasil
| |
| | |
| <br/>
| |
| | |
| == Utilities ==
| |
| | |
| === Scientific Writing ===
| |
| | |
| * [[Media:How_to_write_a_good_introduction.pdf | Chapter "How to Write an Introduction" of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]] ( [http://www.worldscibooks.com/general/p605.html Ref.] )
| |
| | |
| * [[Media:Writing_about_methodology.pdf | Chapter "Writing about methodology" of Professor Glasman-Deal's Science Research Writing For Non-Native Speakers of English]]
| |
| | |
| * [[Media:Customize_and_improve_matlab_plots.pdf | Customise and improve Matlab plots.]]
| |
| | |
| === Computer Settings ===
| |
| | |
| * [[como-instalar-vpn-en-ubuntu | Install Cisco VPN client on Ubuntu 8.04]]
| |
| | |
| * [[SPIE LaTEX manuscript templates and writing guidelines]]
| |
| | |
| * [http://www.cs.stir.ac.uk/~kjt/software/latex/showbst.html BibTeX Style Examples]
| |
| | |
| * [http://impressive.sourceforge.net Impressive - The stylish way of giving PDF presentations]
| |
| | |
| * Install ITK and Kitware software from sources. [http://www.itk.org/Wiki/ITK_Configuring_and_Building] [http://www.vtk.org/Wiki/Complete_Setup] (for more information ask me)
| |
| | |
| * [http://www.itk.org/Wiki/ITK_Python_Wrapping Install python wrapper on building ITK from sources.]
| |
| | |
| * [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation#Types_of_Slicer_3_Plugins Create a 3DSlicer Plugin]
| |
| | |
| * [http://davyd.livejournal.com/230629.html Sync Tomboy Notes]
| |
| | |
| * [[Pushing_references_from_JabRef_To_Lyx | Push references from JabRef to Lyx]]
| |
| | |
| * [http://neuro.debian.net/ Página de instalación de FSL en Debian]
| |
| | |
| * [[Setting up FSL to use a SunGridEngine or computing cluster]]
| |
| | |
| * [[How to install Springer LNCS Style for Lyx]]
| |
| | |
| * [http://www.oak-tree.us/blog/index.php/2009/12/02/latex-cv-part3#more-1332 Automatically Generate a List of Publications for your CV]
| |
| | |
| * [http://www.ehu.es/ccwintco/files/giclus_installation_procedure_technical_note.html Setting up a Ubuntu 10.04.1 cluster (NFS, NIS, Sun Grid Engine, FSL)] [[Media:Giclus_installation_procedure_technical_note.pdf | Giclus10.04 Installation Procedure (PDF File)]]
| |
| | |
| * [[Media:Giclus_sun_grid_engine-2010.pdf | GIC Cluster Presentation]]
| |
| | |
| * [[Media:Git for dummies.png | Git Cheat sheet for Dummies.]]
| |
| | |
| === Image Processing ===
| |
| | |
| * [[Nomenclatura_planos_de_corte | Nomenclatura de los planos de corte en los seres vivos]]
| |
| | |
| * [http://www.na-mic.org/svn/NAMICSandBox/trunk/ NA-MIC Software Repository]
| |
| | |
| * [http://www.imagemagick.org/Usage ImageMagick Usage Examples]
| |
| | |
| * [http://www.fmrib.ox.ac.uk/fsl/fslvbm/index.html FSL VBM How to]
| |
| | |
| * [http://www.nitrc.org/projects/multimodereg BRAINSFit - Rigid Registration Tool]
| |
| | |
| * [[Statistical Parametric Mapping]]
| |
| | |
| * [http://en.wikibooks.org/wiki/SPM/Programming_intro SPM Programming Intro]
| |
| | |
| * [http://www.sph.umich.edu/~nichols/JohnsGems5.html SPM5-Specific code snippets by John Ashburner]
| |
| | |
| * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]
| |
| | |
| * [http://www.fmrib.ox.ac.uk/fsl/fdt/index.html FMRIB's Diffusion Toolbox - FDT v2.0]
| |
| | |
| * [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training 3D Slicer User Documentation]
| |
| | |
| * [http://www.sph.sc.edu/comd/rorden/workshop/fsl/dti/index.html Short introduction to DTI analysis]
| |
| | |
| * [http://www.nitrc.org/projects/art/ Automatic Registration Toolbox (ART)]
| |
| | |
| * [http://www.ogre3d.org/wiki/index.php/Quaternion_and_Rotation_Primer#Quaternion_Rotations A Quaternion and Rotation Primer]
| |
| | |
| * [http://www.picsl.upenn.edu/ANTS/ Advanced Open Source Tools for Normalization and Neuroanatomy (SyN nonlinear registration algorithm)]
| |
| | |
| * [http://www.itksnap.org Semi-Automatic and Manual Segmentation of 3D Volumes]
| |
| | |
| * [http://www.parallelpython.com Parallel Python for parallel processing]
| |
| | |
| * [http://www.cs.ucl.ac.uk/staff/g.ridgway/masking/ Mask creation software for VBM analyses for SPM8]
| |
| | |
| * [http://afni.nimh.nih.gov/afni/community/board/read.php?f=1&i=2066&t=1278&v=f Preprocessing steps for SPM Analyze images to use them on FSL]
| |
| | |
| * [http://www.fmrimethods.org/index.php/Main_Page fMRI methods]
| |
| | |
| * [http://www.fmrib.ox.ac.uk/Members/karla/lectures-and-teaching-material Ms. Karla Miller's lecture presentations]
| |
| | |
| * [[media:fdt.pdf | FMRIB Diffusion Toolbox]]
| |
| | |
| === Pattern Recognition ===
| |
| | |
| * [[alexsavio_scripts | My scripts]]
| |
| | |
| * [[Wiki Weka | Weka How Tos]]
| |
| | |
| * [[Matrices de confusión y otros valores estadísticos]]
| |
| | |
| * [http://www.csie.ntu.edu.tw/~cjlin/libsvm/ LIBSVM - A library for Support Vector Machines]
| |
| | |
| * [http://www.support-vector-machines.org/SVM_soft.html Spider SVM]
| |
| | |
| * [http://www.vias.org/tmdatanaleng/cc_scaling.html Teach Me Data Analysis (Range scaling)]
| |
| | |
| * [http://page.mi.fu-berlin.de/rojas/neural/index.html.html Neural Networks - A Systematic Introduction]
| |
| | |
| * [[Presentaciones-informes-software-veganzones | Some interesting presentations]]
| |
| | |
| * [http://www.siam.org/meetings/op08/invited.php Invited speakers for SIAM Conference on Optimization] (Modersitzki presentation on image registration)
| |
| | |
| === Real World ===
| |
| | |
| * [[Media:Useful things to know about the PhD.pdf | Some useful hints to know about the PhD]]
| |
| | |
| * [http://www.youtube.com/watch?v=XViCOAu6UC0 What the Simpsons think about graduate students!!]
| |
| | |
| * [[Media:InsightOpenScience.pdf | Presentación de Luis Ibañez sobre el sin sentido del entorno de "ciencia abierta" en la que trabajamos.]] ( [http://www.kitware.com/company/team/ibanez.html Página personal de Luis Ibañez en Kitware] )
| |
| | |
| * [https://www-304.ibm.com/jct09002c/university/scholars/collaborativeresearch/results.html Collaborative Research Initiatives]
| |
| | |
| * [[Media:OpenCollaborationPrinciples_2005.pdf | Principios de colaboración abierta en la investigación (2005)]]
| |
| | |
| * [http://boloniaiifordummies.blogspot.com/2008/11/preguntas-y-respuestas.html Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.]
| |
| | |
| * [http://www.acceleratingfuture.com/michael/works/tenreasons.htm 10 Reasons]
| |
| | |
| * [http://www.ehu.es/ccwintco/index.php/Usuario:Natafresa#Visita_al_Instituto_Nacional_de_Pesquisas_Espaciais_.28INPE.29.2C_Sao_Jos.C3.A9_Dos_Campos_.28Brasil.29.2C_Enero_2009 Visita al Instituto Nacional de Pesquisas Espaciais (INPE), Sao José Dos Campos (Brasil), Enero 2009]
| |
| | |
| * [[fotos-veganzones | Miguel's Photo gallery]]
| |
|
| |
|
| <br/> | | <br/> |
