Usuario:Alexsavio

Alexandre Manhaes Savio

alexsavio__at__gmail.com

Education

• Engineer in Computer Science (October 2006) University of the Basque Country
• PhD Student Computational Intelligence Group Computer Science and Artificial Intelligence department

Research Areas:

• MRI medical images segmentation and registration for brain functional localization
• Gesture recognition systems

Research Questions:

• What are each different type of brain image registration methods useful for?
• How could I apply a Random Markov Field method to make a brain image registration? Isn't it related to Mutual Information?
• Could that be useful or better than other existing methods?

Pending Tasks:

• Read articles
• Prepare the presentation about different brain image registration methods for the Jornadas de Inteligencia Computacional in Verona.
• Learn to use 3DSlicer and SPM.

Web links:

tesis

software

<A HREF="http://www.fil.ion.ucl.ac.uk/spm/" ADD_DATE="1204642638" LAST_MODIFIED="1208873331" ID="rdf:#$nnnGM2">SPM - Statistical Parametric Mapping</A>

<A HREF="http://www.itk.org/Wiki/ITK" ADD_DATE="1202913169" LAST_MODIFIED="1208873332" ID="rdf:#$TDzqX">ITK - KitwarePublic</A>

<A HREF="http://www.gnu.org/software/gsl/" ADD_DATE="1202314881" LAST_MODIFIED="1208873332" ID="rdf:#$yWnCY2">GSL - GNU Scientific Library - GNU Project - Free Software Foundation (FSF)</A>

<A HREF="http://www.torch.ch/introduction.php" ADD_DATE="1162286652" LAST_MODIFIED="1208873331" ID="rdf:#$pDJQQ">Torch3: The Dream Comes True</A>

<A HREF="http://www.itk.org/" ADD_DATE="1202299483" LAST_MODIFIED="1208873332" ID="rdf:#$5JXWD">Insight Segmentation and Registration Toolkit</A>

<A HREF="http://www.nvidia.com/object/cuda_home.html" ADD_DATE="1202212398" LAST_MODIFIED="1208873331" ID="rdf:#$cJ.Ld1">CUDA Zone Home - NVIDIA</A>

<A HREF="http://www.itk.org/Wiki/ITK_File_Formats" ADD_DATE="1202295698" LAST_MODIFIED="1208873332" ID="rdf:#$Fn6BP">ITK File Formats - KitwarePublic</A>

<A HREF="http://www.cs.utah.edu/~wkjeong/research.html" ADD_DATE="1202212076" LAST_MODIFIED="1208873331" ID="rdf:#$bJ.Ld1">Partial differential equation solver on GPUs</A>

<A HREF="http://wiki.na-mic.org/Wiki/index.php/NA-MIC-Kit" ADD_DATE="1202211904" LAST_MODIFIED="1208873331" ID="rdf:#$aJ.Ld1">NA-MIC-Kit - NAMIC</A>

<A HREF="http://www.slicer.org/" ADD_DATE="1202210110" LAST_MODIFIED="1208873333" ID="rdf:#$rt.Ld1">3D Slicer</A>

<A HREF="http://www.xnat.org/" ADD_DATE="1202210104" LAST_MODIFIED="1208873332" ID="rdf:#$qt.Ld1">XNAT</A>

<A HREF="http://wiki.na-mic.org/Wiki/index.php/Projects/Diffusion/2007_Project_Week_Contrasting_Tractography_Measures" ADD_DATE="1202211858" LAST_MODIFIED="1208873332" ID="rdf:#$9J.Ld1">ProjectWeek200706:ContrastingTractographyMeasures - NAMIC</A>

<A HREF="http://www.medicalstudio.org/" ADD_DATE="1201600010" LAST_VISIT="1208875803" LAST_MODIFIED="1208873331" ICON="data:image/png;base64,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" LAST_CHARSET="UTF-8" ID="rdf:#$GA9FD3">MedicalStudio | Eases research in medical maging</A>

<A HREF="http://www.loni.ucla.edu/ICBM/Resources/Resources_Software.shtml" ADD_DATE="1204649039" LAST_MODIFIED="1208873331" ID="rdf:#$m1y3Y3">LONI: Laboratory of Neuro Imaging</A>

<A HREF="http://www.itksnap.org/" ADD_DATE="1204725883" LAST_MODIFIED="1208873331" ID="rdf:#$K1GBf">ITK-SNAP Home Page</A>

<A HREF="http://www.mevislab.de/index.php?id=4" ADD_DATE="1205514389" LAST_MODIFIED="1208873332" ID="rdf:#$UxuL71">MeVisLab - MeVisLab</A>

<A HREF="http://www.mitk.org/index.html" ADD_DATE="1205515743" LAST_MODIFIED="1208873332" ID="rdf:#$czuL71">MITK</A>

<A HREF="http://www.igstk.org/index.htm" ADD_DATE="1205837026" LAST_MODIFIED="1208873331" ID="rdf:#$8tA5o1">IGSTK - The Image Guided Surgery Toolkit</A>

<A HREF="http://afni.nimh.nih.gov/afni/about" ADD_DATE="1206454875" LAST_MODIFIED="1208873331" ID="rdf:#$sZ5d+1">About — AFNI and NIfTI Server for NIMH/NIH/PHS/DHHS/USA/Earth</A>

<A HREF="http://surfer.nmr.mgh.harvard.edu/" ADD_DATE="1206454192" LAST_VISIT="1208874077" LAST_MODIFIED="1208873332" LAST_CHARSET="UTF-8" ID="rdf:#$qZ5d+1">FreeSurfer</A>

<A HREF="http://www.itk.org/pipermail/insight-users/2003-August/004731.html" ADD_DATE="1206969969" LAST_MODIFIED="1208873331" ID="rdf:#$s3M1C1">[Insight-users] ITK Python Wrapping Example: ImageRegistration5.py</A>

<A HREF="http://www.talairach.org/" ADD_DATE="1207316820" LAST_MODIFIED="1208873332" ID="rdf:#$pLR541">talairach.org | Home</A>

<A HREF="http://bishopw.loni.ucla.edu/AIR5/index.html" ADD_DATE="1208351624" LAST_MODIFIED="1208873331" ID="rdf:#$qaA+D3">Automated Image Registration</A>

<A HREF="http://www.klab.caltech.edu/~farshadm/fmri/technical_notes.html" ADD_DATE="1208873925" LAST_CHARSET="ISO-8859-1" ID="rdf:#$+ziSu3">Analyzing MRI data: Technical notes</A>

<A HREF="http://www.fil.ion.ucl.ac.uk/spm/ext/#Template-Karolinska" ADD_DATE="1208874014" LAST_CHARSET="ISO-8859-1" ID="rdf:#$0AiSu3">SPM Extensions</A>

<A HREF="http://marsbar.sourceforge.net/" ADD_DATE="1208875432" LAST_CHARSET="UTF-8" ID="rdf:#$6BiSu3">MarsBar region of interest toolbox for SPM</A>

<A HREF="http://neuroimaging.scipy.org/" ADD_DATE="1208875771" LAST_CHARSET="UTF-8" ID="rdf:#$7BiSu3">Neuroimaging</A>

databases

<A HREF="http://www.oasis-brains.org/" ADD_DATE="1204642654" LAST_MODIFIED="1208873331" ID="rdf:#$onnGM2">OASIS: Home Page</A>

<A HREF="http://www.dana.org/resources/brainweb/default.aspx" ADD_DATE="1202815269" LAST_MODIFIED="1208873332" ID="rdf:#$BPIgn3">The Dana Foundation - BrainWeb</A>

<A HREF="http://www.bic.mni.mcgill.ca/brainweb/" ADD_DATE="1202815233" LAST_MODIFIED="1208873331" ID="rdf:#$APIgn3">BrainWeb: Simulated Brain Database</A>

<A HREF="http://nifti.nimh.nih.gov/nifti-1/" ADD_DATE="1207316992" LAST_MODIFIED="1208873332" ID="rdf:#$qLR541">NIfTI-1 Data Format — Neuroimaging Informatics Technology Initiative</A>

institutes

<A HREF="http://mial.fas.sfu.ca/pubs.php" ADD_DATE="1202680979" LAST_MODIFIED="1208873332" ID="rdf:#$kbO6W3">(MIAL) Medical Image Analysis Lab website</A>

<A HREF="http://na-mic.org/" ADD_DATE="1202209968" LAST_MODIFIED="1208873332" ID="rdf:#$pt.Ld1">National Alliance for Medical Image Computing</A>

<A HREF="http://www.similar.cc/CMS/default.asp?id=9&langue=" ADD_DATE="1201600016" LAST_MODIFIED="1208873332" ID="rdf:#$HA9FD3">SimilarNet</A>

<A HREF="http://www.loni.ucla.edu/ICBM/" ADD_DATE="1204643312" LAST_MODIFIED="1208873331" ID="rdf:#$monGM2">LONI: Laboratory of Neuro Imaging</A>

<A HREF="http://www.sci.utah.edu/cibc/index.html" ADD_DATE="1205520684" LAST_MODIFIED="1208873332" ID="rdf:#$wAuL71">NIH Center for Integrative Biomedical Computing at the Scientific Computing and Imaging Institute - University of Utah</A>

<A HREF="http://www.tele.ucl.ac.be/jobs.php" ADD_DATE="1205768881" LAST_MODIFIED="1208873333" ID="rdf:#$QjFYq3">UCL-TELE - Open positions</A>

<A HREF="http://www.socialbehavior.uzh.ch/index.html" ADD_DATE="1208873359" LAST_CHARSET="UTF-8" ID="rdf:#$d5nsX2">UZH - Foundations of Human Social Behavior - Welcome to the Research Priority Program on the Foundations of Human Social Behavior</A>

<A HREF="http://www.ion.ucl.ac.uk/education/short-courses.htm" ADD_DATE="1208873383" LAST_CHARSET="UTF-8" ID="rdf:#$f5nsX2">The Institute of Neurology, Queen Square, London, UK</A>

knowledge

<A HREF="http://www.biomedcentral.com/" ADD_DATE="1202901683" LAST_MODIFIED="1208873331" ID="rdf:#$OAzqX">BioMed Central | The Open Access Publisher</A>

<A HREF="http://www.sciencedirect.com/science?_ob=HomePageURL&_method=userHomePage&_lg=Y&_acct=C000049823&_version=1&_urlVersion=0&_userid=984461&md5=9cbbdf5b269b928e33a6274ddeb45d2a" ADD_DATE="1202825418" LAST_MODIFIED="1208873331" ID="rdf:#$xn54f1">ScienceDirect - Home</A>

<A HREF="http://bishopw.loni.ucla.edu/AIR5/models.html" ADD_DATE="1202723132" LAST_MODIFIED="1208873331" ID="rdf:#$0M1k53">spatial transformation models</A>

<A HREF="http://en.wikipedia.org/wiki/Image_registration" ADD_DATE="1202680964" LAST_MODIFIED="1208873332" ID="rdf:#$jbO6W3">Image registration - Wikipedia, the free encyclopedia</A>

<A HREF="http://www.accesowok.fecyt.es/wos/" ADD_DATE="1207841758" LAST_MODIFIED="1208873331" ID="rdf:#$VqdQf2">/wos/</A>

<A HREF="http://www.accesowok.fecyt.es/login/" ADD_DATE="1202317317" LAST_MODIFIED="1208873332" ID="rdf:#$M2W+d1">Web of knowledge</A>

<A HREF="http://users.loni.ucla.edu/~thompson/PDF/" ADD_DATE="1202315532" LAST_MODIFIED="1208873332" ID="rdf:#$agaZn3">Index of /~thompson/PDF</A>

<A HREF="http://ieeexplore.ieee.org/Xplore/dynhome.jsp" ADD_DATE="1202311585" LAST_VISIT="1208942635" LAST_MODIFIED="1208873331" ICON="data:image/bmp;base64,Qk32AAAAAAAAADYAAAAoAAAABwAAAAgAAAABABgAAAAAAMAAAAAAAAAAAAAAAAAAAAAAAAAA////////////////////////////AAAA////////////////////////////AAAA////////////////////////////AAAA////////////////////////////AAAA////////////////////////////AAAA////////////////////////////AAAA////////////////////////////AAAA////////////////////////////AAAA" LAST_CHARSET="ISO-8859-1" ID="rdf:#$w.WIT3">IEEE Xplore: Dynamic Home Page</A>

<A HREF="http://ocw.mit.edu/OcwWeb/Mathematics/18-03Spring-2006/VideoLectures/index.htm" ADD_DATE="1200506065" LAST_MODIFIED="1208873332" ID="rdf:#$ce8ul2">MIT OpenCourseWare | Mathematics | 18.03 Differential Equations, Spring 2006 | Video Lectures</A>

<A HREF="http://mathworld.wolfram.com/" ADD_DATE="1189360382" LAST_MODIFIED="1208873331" ID="rdf:#$5Hzbv1">MathWorld: The Web's Most Extensive Mathematics Resource</A>

<A HREF="http://www.visiblebody.com/" ADD_DATE="1200869488" LAST_MODIFIED="1208873331" ID="rdf:#$AYmt82">visiblebody.com</A>

<A HREF="http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.27.4486" ADD_DATE="1204652498" LAST_MODIFIED="1208873332" ID="rdf:#$.5vGF3">Information Theoretic Methods in Probability and Statistics - CiteSeerX</A>

<A HREF="http://math.fullerton.edu/mathews/c2003/SchwarzChristoffelMod.html" ADD_DATE="1204673980" LAST_MODIFIED="1208873332" ID="rdf:#$Q8pLH2">Schwarz-Christoffel Transformation Mapping</A>

<A HREF="http://spie.org/" ADD_DATE="1205515238" LAST_MODIFIED="1208873333" ID="rdf:#$VxuL71">Home: SPIE.org</A>

<A HREF="http://www.cs.rpi.edu/academics/courses/spring04/imagereg/" ADD_DATE="1207050692" LAST_MODIFIED="1208873332" ID="rdf:#$ieSrV">CSci 6971, ECSE 6969: Image Registration Techniques</A>

<A HREF="http://insight-journal.org/midas/handle.php?handle=1926/161#" ADD_DATE="1207141645" LAST_MODIFIED="1208873332" ID="rdf:#$kLBFs2">handle.php</A>

<A HREF="http://dlxs2.library.cornell.edu/cgi/t/text/text-idx?c=math;cc=math;rgn=main;view=text;idno=05230001" ADD_DATE="1207227127" LAST_MODIFIED="1208873331" ID="rdf:#$IrL161">Historical Math Monographs</A>

<A HREF="http://www.informatik.uni-trier.de/~ley/db/indices/a-tree/r/Rohr:Karl.html" ADD_DATE="1207648636" LAST_MODIFIED="1208873332" ID="rdf:#$n2dQf2">DBLP: Karl Rohr</A>

<A HREF="http://www.fil.ion.ucl.ac.uk/spm/course/slides08-zurich/" ADD_DATE="1208873364" LAST_VISIT="1208940572" 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LAST_CHARSET="ISO-8859-1" ID="rdf:#$e5nsX2">Slides :: SPM Course 2008 @ Zürich</A>

<A HREF="http://imaging.mrc-cbu.cam.ac.uk/imaging/CbuImaging" ADD_DATE="1208874038" LAST_VISIT="1208875203" LAST_CHARSET="UTF-8" ID="rdf:#$1AiSu3">CbuImaging - Imaging Wiki</A>

<A HREF="http://imaging.mrc-cbu.cam.ac.uk/imaging/FreesurferInformation" ADD_DATE="1208874534" LAST_CHARSET="UTF-8" ID="rdf:#$5BiSu3">FreesurferInformation - Imaging Wiki</A>

<A HREF="http://www.statsoft.com/textbook/stathome.html?stfacan.html&1" ADD_DATE="1204741881" LAST_MODIFIED="1208873331" ID="rdf:#$0W4ZX2">The Statistics Homepage</A>

<A HREF="http://grants.nih.gov/grants/guide/pa-files/PA-01-030.html" ADD_DATE="1204758839" LAST_MODIFIED="1208873331" ID="rdf:#$vJr8s2">NIH Guide: EXPLORATORY/DEVELOPMENTAL GRANTS FOR DIAGNOSTIC CANCER IMAGING</A>

<A HREF="http://paulnovo.org/publications" ADD_DATE="1205316106" LAST_MODIFIED="1208873333" ID="rdf:#$2nwE+1">Publications | PaulNovo.org</A>

<A HREF="http://paulnovo.org/" ADD_DATE="1205317226" LAST_MODIFIED="1208873332" ID="rdf:#$DwwE+1">PaulNovo.org | paul novotny's internet home</A>

<A HREF="http://www.vtk.org/Wiki/VTK" ADD_DATE="1205420664" LAST_MODIFIED="1208873331" ID="rdf:#$t5MZ83">VTK - KitwarePublic</A>

<A HREF="http://www.itk.org/HTML/MRIBiasCorrection.htm" ADD_DATE="1205517977" LAST_MODIFIED="1208873331" ID="rdf:#$dzuL71">Insight Segmentation and Registration Toolkit</A>

<A HREF="http://arxiv.org/" ADD_DATE="1205539382" LAST_MODIFIED="1208873332" ID="rdf:#$B0+4B2">arXiv.org e-Print archive</A>

<A HREF="http://front.math.ucdavis.edu/journals#copyright" ADD_DATE="1205539387" LAST_MODIFIED="1208873332" ID="rdf:#$C0+4B2">Front: Journals</A>

<A HREF="http://www.na-mic.org/Wiki/index.php/Slicer:Workshops:User_Training_101" ADD_DATE="1206442236" LAST_MODIFIED="1208873332" ID="rdf:#$XZ8KI2">Slicer:Workshops:User Training 101 - NAMIC</A>

<A HREF="http://www.fmrib.ox.ac.uk/fsl/" ADD_DATE="1206454748" LAST_MODIFIED="1208873331" ID="rdf:#$rZ5d+1">FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data</A>

<A HREF="http://studenthacks.org/2008/03/04/resources/" ADD_DATE="1206455787" LAST_MODIFIED="1208873331" ID="rdf:#$Nb6d+1">101+ Web Resources for Students | studenthacks.org</A>

<A HREF="http://www.dfmf.uned.es/actividades/no_reglada/imagen_medica/" ADD_DATE="1206647442" LAST_MODIFIED="1208873332" ID="rdf:#$TC.BO1">Imagen Médica Digital. Curso 2000/01. UNED</A>

<A HREF="http://www.scirus.com/" ADD_DATE="1206910730" LAST_MODIFIED="1208873333" ID="rdf:#$AEfW73">Scirus - for scientific information</A>