Tutorial Python Alex 19-10-12
<html xmlns:tomboy="http://beatniksoftware.com/tomboy" xmlns:link="http://beatniksoftware.com/tomboy/link" xmlns:size="http://beatniksoftware.com/tomboy/size"><head><META http-equiv="Content-Type" content="text/html; charset=utf-8"><title>Python Tutorial</title><style type="text/css"> body { } h1 { font-size: xx-large; font-weight: bold; border-bottom: 1px solid black; } div.note { position: relative; display: block; padding: 5pt; margin: 5pt; white-space: -moz-pre-wrap; /* Mozilla */ white-space: -pre-wrap; /* Opera 4 - 6 */ white-space: -o-pre-wrap; /* Opera 7 */ white-space: pre-wrap; /* CSS3 */ word-wrap: break-word; /* IE 5.5+ */ } </style></head><body><div class="note" id="Python Tutorial"><a name="python tutorial"></a><h1>Python Tutorial</h1> - Alexandre Savio, October 19th, 2012 <span style="font-family:monospace">sudo apt-get install ipython python-numpy python-scipy python-mvpa2 python-setuptools python-matplotlib python-mvpa2-tutorialdata git python-pip python-nibabel sudo pip install -U scikit-image scikit-learn statsmodels</span> <ul><li dir="ltr"><b>Python</b><strike> </strike><ul><li dir="ltr"><b>Hello World!</b> </li><li dir="ltr">Tutorials: <ul><li dir="ltr"><a style="color:#3465A4" href="http://docs.python.org/tutorial/index.html">http://docs.python.org/tutorial/index.html</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://docs.python.org/tutorial/controlflow.html">http://docs.python.org/tutorial/controlflow.html</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://docs.python.org/tutorial/datastructures.html">http://docs.python.org/tutorial/datastructures.html</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://docs.python.org/tutorial/datastructures.html#looping-techniques">http://docs.python.org/tutorial/datastructures.html#looping-techniques</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://docs.python.org/tutorial/datastructures.html#dictionaries">http://docs.python.org/tutorial/datastructures.html#dictionaries</a></li></ul></li></ul></li></ul> <ul><li dir="ltr"><b>IDEs</b> <ul><li dir="ltr"><a style="color:#3465A4" href="http://ipython.org">http://ipython.org</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://code.google.com/p/pythonxy/">http://code.google.com/p/pythonxy/</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://spyder-ide.blogspot.com.es/">http://spyder-ide.blogspot.com.es/</a> </li></ul></li><li dir="ltr"> </li><li dir="ltr"><b>Installing libraries</b> <ul><li dir="ltr">Ubuntu repositories </li><li dir="ltr"><a style="color:#3465A4" href="http://pypi.python.org/pypi">http://pypi.python.org/pypi</a></li></ul></li></ul> <ul><li dir="ltr"><b>Numpy</b><strike> </strike><ul><li dir="ltr"><a style="color:#3465A4" href="http://numpy.scipy.org/">http://numpy.scipy.org/</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://www.scipy.org/Tentative_NumPy_Tutorial">http://www.scipy.org/Tentative_NumPy_Tutorial</a> </li><li dir="ltr">Numpy for Matlab users <ul><li dir="ltr"><a style="color:#3465A4" href="http://www.scipy.org/NumPy_for_Matlab_Users">http://www.scipy.org/NumPy_for_Matlab_Users</a> </li></ul></li><li dir="ltr">Tutorials: <ul><li dir="ltr"><a style="color:#3465A4" href="http://www.scipy.org/Tentative_NumPy_Tutorial#head-864862d3f2bb4c32f04260fac61eb4ef34788c4c">http://www.scipy.org/Tentative_NumPy_Tutorial#head-864862d3f2bb4c32f04260fac61eb4ef34788c4c</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://www.scipy.org/Tentative_NumPy_Tutorial#head-d55e594d46b4f347c20efe1b4c65c92779f06268">http://www.scipy.org/Tentative_NumPy_Tutorial#head-d55e594d46b4f347c20efe1b4c65c92779f06268</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://www.scipy.org/Tentative_NumPy_Tutorial#head-aa75ec76530ff51a2e98071adb7224a4b793519e">http://www.scipy.org/Tentative_NumPy_Tutorial#head-aa75ec76530ff51a2e98071adb7224a4b793519e</a></li></ul></li></ul></li></ul> <ul><li dir="ltr"><b>Scipy</b> <ul><li dir="ltr"><a style="color:#3465A4" href="http://www.scipy.org/Cookbook">http://www.scipy.org/Cookbook</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://scipy-central.org/">http://scipy-central.org/</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://docs.scipy.org/doc/scipy/reference/index.html">http://docs.scipy.org/doc/scipy/reference/index.html</a> </li><li dir="ltr">Tutorials: <ul><li dir="ltr"><a style="color:#3465A4" href="http://www.scipy.org/Cookbook/Interpolation">http://www.scipy.org/Cookbook/Interpolation</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://www.scipy.org/Cookbook/Watershed">http://www.scipy.org/Cookbook/Watershed</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://www.scipy.org/Cookbook/RadialBasisFunctions">http://www.scipy.org/Cookbook/RadialBasisFunctions</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://www.scipy.org/Cookbook/LinearRegression">http://www.scipy.org/Cookbook/LinearRegression</a></li></ul></li></ul></li></ul> <ul><li dir="ltr"><b>Statistics and Pattern analysis</b> <ul><li dir="ltr"><a style="color:#3465A4" href="http://pypi.python.org/pypi/statsmodels">http://pypi.python.org/pypi/statsmodels</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://docs.scipy.org/doc/scipy/reference/tutorial/stats.html">http://docs.scipy.org/doc/scipy/reference/tutorial/stats.html</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://www.pymvpa.org/">http://www.pymvpa.org/</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://www.shogun-toolbox.org/">http://www.shogun-toolbox.org/</a> <ul><li dir="ltr"><a style="color:#3465A4" href="http://www.shogun-toolbox.org/doc/en/current/methods.html">http://www.shogun-toolbox.org/doc/en/current/methods.html</a> </li></ul></li><li dir="ltr"><a style="color:#3465A4" href="http://scikit-learn.org/stable/">http://scikit-learn.org/stable/</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://scikits.appspot.com/scikits">http://scikits.appspot.com/scikits</a> </li><li dir="ltr">Tutorial scipy.stats: <ul><li dir="ltr"><a style="color:#3465A4" href="http://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.ttest_ind.html#scipy.stats.ttest_ind">http://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.ttest_ind.html#scipy.stats.ttest_ind</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.pearsonr.html#scipy.stats.pearsonr">http://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.pearsonr.html#scipy.stats.pearsonr</a> </li></ul></li><li dir="ltr">Tutorial scikit-learn: <ul><li dir="ltr"><a style="color:#3465A4" href="http://nisl.github.com/introduction.html">http://nisl.github.com/introduction.html</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://www.ehu.es/ccwintco/index.php/Hyperspectral_Remote_Sensing_Scenes">http://www.ehu.es/ccwintco/index.php/Hyperspectral_Remote_Sensing_Scenes</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://www.ehu.es/ccwintco/uploads/a/a3/Salinas_corrected.mat">http://www.ehu.es/ccwintco/uploads/a/a3/Salinas_corrected.mat</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://www.ehu.es/ccwintco/uploads/f/fa/Salinas_gt.mat">http://www.ehu.es/ccwintco/uploads/f/fa/Salinas_gt.mat</a> </li><li dir="ltr"><a style="color:#3465A4" href="/home/alexandre/Dropbox/Documents/phd/work/salinas/sklearn_on_salinas.py">/home/alexandre/Dropbox/Documents/phd/work/salinas/sklearn_on_salinas.py</a></li></ul></li></ul></li></ul> <ul><li dir="ltr"><b>Neuroimaging with Scikit-learn</b> <ul><li dir="ltr"><a style="color:#3465A4" href="http://nisl.github.com/index.html">http://nisl.github.com/index.html</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://nisl.github.com/auto_examples/index.html">http://nisl.github.com/auto_examples/index.html</a> </li><li dir="ltr">Tutorial: <ul><li dir="ltr">cd ~ </li><li dir="ltr">git clone <a style="color:#3465A4" href="https://github.com/nisl/tutorial.git">https://github.com/nisl/tutorial.git</a> </li><li dir="ltr">cd tutorial </li><li dir="ltr">sudo python setup.py install </li><li dir="ltr">ipython </li><li dir="ltr"><a style="color:#3465A4" href="http://nisl.github.com/auto_examples/plot_ica_resting_state.html#example-tutorial-plot-ica-resting-state-py">http://nisl.github.com/auto_examples/plot_ica_resting_state.html#example-tutorial-plot-ica-resting-state-py</a></li></ul></li></ul></li></ul><strike> </strike> <ul><li dir="ltr"><b>Imaging</b> <ul><li dir="ltr"><a style="color:#3465A4" href="http://docs.scipy.org/doc/scipy/reference/ndimage.html">http://docs.scipy.org/doc/scipy/reference/ndimage.html</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://www.pythonware.com/products/pil/">http://www.pythonware.com/products/pil/</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://scikit-image.org/">http://scikit-image.org/</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://opencv.willowgarage.com/wiki/">http://opencv.willowgarage.com/wiki/</a> </li><li dir="ltr">Imagemagick API </li><li dir="ltr">Nifti images: <a style="color:#3465A4" href="http://nipy.sourceforge.net/nibabel/">http://nipy.sourceforge.net/nibabel/</a> </li><li dir="ltr">Tutorials: <ul><li dir="ltr"><a style="color:#3465A4" href="http://scikit-image.org/docs/dev/auto_examples/plot_gabors_from_lena.html">http://scikit-image.org/docs/dev/auto_examples/plot_gabors_from_lena.html</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://scikit-image.org/docs/dev/auto_examples/plot_segmentations.html">http://scikit-image.org/docs/dev/auto_examples/plot_segmentations.html</a></li></ul></li></ul></li></ul> <ul><li dir="ltr"><b>Hyperspectral Imaging</b> <ul><li dir="ltr"><a style="color:#3465A4" href="http://www.orfeo-toolbox.org/otb/">http://www.orfeo-toolbox.org/otb/</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://spectralpython.sourceforge.net/">http://spectralpython.sourceforge.net/</a></li></ul></li></ul> <ul><li dir="ltr"><b>Interfaces with other softwares</b> <ul><li dir="ltr"><a style="color:#3465A4" href="http://docs.scipy.org/doc/scipy/reference/io.html">http://docs.scipy.org/doc/scipy/reference/io.html</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://forge.scilab.org/index.php/p/sciscipy/">http://forge.scilab.org/index.php/p/sciscipy/</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://rpy.sourceforge.net/rpy2.html">http://rpy.sourceforge.net/rpy2.html</a></li></ul></li></ul> <ul><li dir="ltr"><b>Plotting</b> <ul><li dir="ltr"><a style="color:#3465A4" href="http://matplotlib.org/">http://matplotlib.org/</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://code.enthought.com/projects/mayavi/">http://code.enthought.com/projects/mayavi/</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://cairoplot.sourceforge.net">http://cairoplot.sourceforge.net</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://luke.campagnola.me/code/pyqtgraph/">http://luke.campagnola.me/code/pyqtgraph/</a></li></ul></li></ul> <ul><li dir="ltr"><b>Others</b> <ul><li dir="ltr"><a style="color:#3465A4" href="http://igraph.sourceforge.net/">http://igraph.sourceforge.net/</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://networkx.lanl.gov/">http://networkx.lanl.gov/</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://nltk.org/">http://nltk.org/</a> </li><li dir="ltr"><a style="color:#3465A4" href="http://sympy.org/en/index.html">http://sympy.org/en/index.html</a></li></ul></li></ul> <ul><li dir="ltr"><b>Cleanup before leaving... ?</b></li></ul> sudo pip uninstall nisl rm -r <a style="color:#3465A4" href="~/tutorial">~/tutorial</a> </div></body></html>
