Usuario:Alexsavio

Alexandre Manhães Savio

• Contact: alexandre.manhaes__at__ehu.es

Studies

• Engineer in Computer Science (October 2006) - University of the Basque Country

• PhD Student in the Computational Intelligence Group of the Computer Science and Artificial Intelligence department - University of the Basque Country

Courses

• 7th-11th July, 2008 - AERFAI Summer School - PRMA'08 - Pattern Recognition for Motion Analysis in the Computer Vision Center of the Universidad Autónoma de Barcelona.

Publications

2008

   Maite García-Sebastián, A. M. Savio, M. Graña.
   Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm 
   Proceedings CEC 2008, pp.4147-4151 
   ISBN 978-1-4244-1823-7

Research Areas

• MRI medical images segmentation and registration for brain functional localization
• Gesture recognition systems

Research Questions

• Mutual information non linear registration procedure.

• Steps of cortical surface registration. Cortical topology reconstruction.

• Tensor Based Morphometry

• ¿Where is the water and the preys in this jungle?

Pending Tasks

• Preparar informe sobre VBM
• Preparar capítulo de libro sobre registro no lineal.
• Learn 3DSlicer and FSL for registration.
• Learning how to use ITK, VTKEdge and ParaView.
• Creating plugin for 3DSlicer for groupwise registration method.

Deadlines de congresos y trabajos pendientes

"I love deadlines. I especially like the whooshing sound they make as they go flying by." - Douglas Adams

• SPIE Medical Imaging

Due Dates for Abstract Submission: 28 July 2008. Submit Your Manuscript: 12 January 2009.

• BIOSTEC 2009

Regular Paper Submission: October 17, 2008

Still coming...

• MICCAI 2009

Submission of full papers: 8 March 2009. Papers for MICCAI 2009 must be submitted in LNCS style, prepared for double-blind review, and may be up to 8 pages, including all references, tables and figures.

Proyectos

• Petición Proyecto MICINN 2008

• Fin de SAIOTEK 2007

Work diary (meetings with directors)

2008

• 29/05 - Presentation of Jean-Luc and Charlotte about the OASIS presentation paper.
• 30/05 (15:00 - 17:00) - Discusión de artículo de Ardenakia

Current readings

Books

• Human Brain Function 2nd edition - J Ashburner, K Friston and W Penny PDF completo

• Medical Image Registration - by Joseph V. Hajnal (Editor), Derek L.G. Hill (Editor), David J. Hawkes (Editor)

• Splines - A perfect Fit for Signal and Image Processing

Working articles

• Point similarity measures for non-rigid registration of multi-modal data - Peter Rogelj, Stanislav Kovacic, James C. Gee, Computer Vision and Image UnderstandingVolume 92, Issue 1, , October 2003, Pages 112-140.

• Quantitative comparison of algorithms next term for previous terminter-subject registration of 3D volumetric brain MRI scans - Babak A. Ardekania, Stephen Guckemusa, Alvin Bachmana, Matthew J. Hoptmanb, Michelle Wojtaszeka and Jay Nierenberga

• Nonrigid registration of brain MRI using NURBS - Jianzhe Wang and Tianzi Jian

• Contour Fitting Using an Adaptive Spline Model (1995) - Daniel Rueckert, Peter Burger

• More reading information in my groupware article Artículos Image Registration

Congresos y revistas objetivo

Revistas (ordenadas por factor de impacto)

1- Journal of Magnetic Resonance Imaging

2- Medical Image Analysis

3- IEEE Transactions of Medical Imaging

4- Magnetic Resonance in Medicine

Otras revistas

• Computer Assisted Radiology and Surgery

• Insight Journal

• Midas Journal

• Biomedical Imaging and Intervention Journal

Congresos

• MICCAI Society

• BIOSTEC

• SPIE Medical Imaging

Direcciones web de interés

• CBU Imaging Wiki

• Kitware Youtube Channel

• BioInfoBank Library

• Install ITK from sources.

• Install python wrapper on building ITK from sources.

• Create a 3DSlicer Plugin

• Sync Tomboy Notes

• Install Cisco VPN client on Ubuntu 8.04

• Push references from JabRef to Lyx

• ¿Cómo instalar el cliente VPN de Cisco en Ubuntu 8.04.?

• Página de instalación de FSL en Debian

• FSL VBM How to

• BRAINSFit - Rigid Registration Tool

• Neural Networks

• A Quaternion and Rotation Primer

• FMRIB's Diffusion Toolbox - FDT v2.0

• 3D Slicer User Documentation

• Setting up FSL to use a SunGridEngine or computing cluster

Databases

• OASIS

• BrainMap

• Fractional Anisotropy Database

Research Groups

• Structural Brain Mapping Group - University of Jena - Thüringen - central Germany

• Section of Biomedical Image Analysis - University of Pennsylvania

Utilidades

• Nomenclatura de los planos de corte en los seres vivos

• Matrices de confusión y otros valores estadísticos

• SPIE LaTEX manuscript templates and writing guidelines

• NA-MIC Software Repository

• Some useful hints to know about the PhD

• BibTeX Style Examples

• ImageMagick Usage Examples

Mis curiosidades sobre el mundo real

• Leopoldo Abadia en Buenafuente: Los bancos y la crisis

• Presentación de Luis Ibañez sobre el sin sentido del entorno de "ciencia abierta" en la que trabajamos. ( Página personal de Luis Ibañez en Kitware )

• Collaborative Research Initiatives

• Principios de colaboración abierta en la investigación (2005)

• Preguntas y respuestas sobre la situación Ingeniería Informática - Tratado de Bolonia, con referencias.

Estado burocrático de la tesis

Director

Manuel Graña

primer año de cursos de doctorado

matriculado para el trabajo de investigación