Usuario:Oier.echaniz

Oier Echaniz Beneitez

Radiofrequency Image

"Ever tried. Ever failed. No matter. Try Again. Fail again. Fail better." - Samuel Beckett
"Solving a problem in a hundred years is, practically speaking, the same as not solving it at all." - Steven Pinker

Studies

• Computer Science Engineer (2006/2012) - Universidad del País Vasco (UPV/EHU).
• Masters Degree in Computational Engineering and Intelligent Systems (2012/2013) - Universidad del País Vasco (UPV/EHU).
• Currently:

Researcher (PDI) at the Computational Intelligence Group of the Computer Science and Artificial Intelligence Department - Universidad del País Vasco (UPV/EHU).

Work Experience

• June/2011 - March/2012 - Research assistant at Tecnalia Research and Innovation

Data mining and optimization algorithms used to predict errors in a aeronautic production.

• January/2013 - December/2015 - CTO/Founder at Asmatu Intelligent Solutions

Optimization and machine learning for industry

Organizations and volunteering

• Python San Sebastian Society - Chair (since 2014)
• EuroPython Society
  • Member (since 2015).
  • Board of directors (2015-2017)
  • Media WG member (2017 - now)
• EuskoPython Society - Chair (since 2014)
• European Network for the Study of Cholangiocarcinoma (ENS-CCA) - supporting member
• Aspanogi - Volunteer/Helper (since 2014)
• PyJokes Society - Spokesperson and contributor
• Software Carpentry - Instructor

Software

• Vampyr: a Python module to analize statistically blood samples.

• My github homepage

• Neurita free software packages

• Asmatzen (my blog)

• PyJokes FOSS packages

• BIOTHINGS: a Python library to create bio-related pipelines

Datasets

• Radiomics:

- CSV ready for data analysis. Features extracted with PyRadiomics after preprocessing Head and Neck image database.  Download at Zenodo ( Doi: 10.5281/zenodo.3660998 )

Publications

2019

Carlos M Chiesa-Estomba, Oier Echaniz, Ekhiñe Larruscain, Jose A Gonzalez-García, Jon A Sistiaga-Suarez, Manuel Graña

Radiomics and Texture Analysis in Laryngeal Cancer. Looking for new frontiers in precision medicine thought Imaging analysis.

Cancers

DOI: 10.3390/cancers11101409 / JCR 2018 6.162 (Q1 Oncology)

Oier Echaniz, Manuel Graña

BIOTHINGS: A Pipeline Creation Tool for PAR-CLIP Sequence Analsys

8th INTERNATIONAL WORK-CONFERENCEON THE INTERPLAY BETWEEN NATURALAND ARTIFICIAL COMPUTATION (IWINAC 2019)

DOI: 10.1007/978-3-030-19591-5_34

2018

Oier Echaniz, Manuel Graña

A Comparison of PAR-CLIP Peak Calling Approaches on Noisy Data

2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

DOI: 10.1109/BIBM.2018.8621210

2017

Marta Fernandez-Mercado, Erika Larrea, Izaskun Ceberio, Ibai Goicoechea, Oier Etxaniz, Julien Buratti, Yufei Luo, Marcos Arauzo-Bravo,Markus Landthaler, Charles H. Lawrie1

NOVEL TARGET GENES OF DEREGULATED MIRNAS IN DLBCL REVEALED BY ENDOGENOUS AGO2 PAR-CLIP

22nd Congress of the European Hematology Association (E-POSTER)

Manuel Grana, Oier Echaniz, Beatriz Rodriguez-Vigil and Idoia Labayen.

Automated segmentation of visceral adiposity in MRI in obese children

CORES 2017

Oier Echaniz, Manuel Graña

Ongoing work on deep learning for lung cancer prediction"

IWINAC 2017

2016

Manuel Graña, Oier Echaniz

Views on Electronic Health Record

Inmed 2016

2015

Medrano M, Maiz E, Maldonado-Martín S, Arenaza L, Rodríguez-Vigil B, Ortega FB, Ruiz JR, Larrarte E, Díez I, Sarasúa A, Tobalina I, Barrenechea L, Pérez-Asenjo J, Kannengiesser S, Manhães-Savio A, Echaniz O, Labayen I

The effect of a multidisciplinary intervention program on hepatic adiposity in overweight-obese children: protocol of the EFIGRO study

Contemporary Clinical Trials

DOI: 10.1016/j.cct.2015.09.017

Oier Echaniz, Borja Ayerdi, Alexandre Savio, Manuel Graña

An Ad-Hoc Image Segmentation of Subcutaneous and Visceral Adipose Tissue from Abdomino-Pelvic Magnetic Resonance Images

Inmed 2015

Borja Ayerdi, Oier Echaniz, Alexandre Savio, Manuel Graña

Automated Segmentation of Subcutaneous and Visceral Adipose Tissues from MRI

Inmed 2015

Alexandre Savio, Oier Echaniz, Manuel Graña

Comparando Cerebros con la Morfometría Basada en Voxel Clave: P

Semana del cerebro, San Sebastián, 9/03/2015 (POSTER)

Editorships

2018

Editors: Graña, M., López-Guede, J.M., Etxaniz, O., Herrero, Á., Sáez, J.A., Quintián, H., Corchado, E. (Eds.)

International Joint Conference SOCO’18-CISIS’18-ICEUTE’18

ISBN 978-3-319-94120-2 link

2016

Editors: Graña, M., López-Guede, J.M., Etxaniz, O., Herrero, Á., Sáez, J.A., Quintián, H., Corchado, E. (Eds.)

International Joint Conference SOCO’16-CISIS’16-ICEUTE’16

ISBN 978-3-319-94120-2 link

Recognitions

2017

Medalla al merito ciudadano: ASPANOGI, San Sebastian, 2017

As part of Aspanogi volunteering team.

link

2016

Acknowledgement at:
Jesus M Banales et al.

Expert consensus document: Cholangiocarcinoma: current knowledge and future perspectives consensus statement from the European Network for the Study of Cholangiocarcinoma (ENS-CCA)

Nature Reviews Gastroenterology & Hepatology

doi:10.1038/nrgastro.2016.51

link

2012

Entreprenari saria 2012:
Best end of grade project with business projections.

Activities

Borja & I, Wroclaw, 2015

(x) future events, find me in this activities!

Lecturer/Speaker

• Instructor of Software Carpentry Workshop at Lund University 2016 (LundSWC)
• Speaker and workshop instructor of European Maker Week Gasteiz 2016 (makerday)

Organization

2020

• [CANCELED TO 2021] Local organizing comittee and Co-chair of the conference of EuroScipy 2020 Bilbao (EUROSCIPY 2020)
• [CANCELED TO 2021] Local organizing comittee of GeoPython 2020 Bilbao (GeoPython 2020)
• [POSTPONED TO LATER 2020] Organizing committee member of HacKCancer Datathon 2020

2019

• Local organizing comittee and Co-chair of the conference of EuroScipy 2019 Bilbao (EUROSCIPY 2019)

2018

• Local organizing committee member of Python San Sebastian 2018 (Pyss16)
• Local organizing committee and Co-Chair of organizing committee of ICEUTE 2018 (ICEUTE 2018)
• Local organizing committee and Co-Chair of organizing committee of SOCO 2018 (SOCO 2018)
• Local organizing committee and Co-Chair of organizing committee of CISIS 2018 (CISIS 2018)
• Organizing committee member of HacKCancer Datathon 2018 (Hackcancer)

2017

• Local organizing committee member of Python San Sebastian 2017 (Pyss17)
• Organizing committee as Board Member of Europython 2017 (Europython 2017)

2016

• Local organizing committee member of Python San Sebastian 2016 (Pyss16)
• Local organizing committee member of ICEUTE 2016 (ICEUTE 2016)
• Local organizing committee member of SOCO 2016 (SOCO 2016)
• Local organizing committee member of CISIS 2016 (CISIS 2016)
• Local organizing committee member of Europython 2016 (Europython 2016)
• Local organizing committee and helper of Software Carpentry Workshop CFM-EHU 2016
• Local organizing committee member of the I International Monothematic Congress in Cholangiocarcinoma (MCCCA)

2015

• Local organizing committee member of Python San Sebastian 2015 (Pyss15)
• Local organizing committee (Host) and helper of Software Carpentry Workshop CFM-EHU 2015
• Local organizing committee member of Europython 2015 (Europython 2015)
• Local organizing committee member of Python San Sebastian 2014 (Pyss14)

Attendee

Attended conferences as participant

• (Invited but not Attended due to collapse and covid-19 date change) Retos de futuro en la medicina 2020 - Madrid, Spain. Invitados junto a Manuel Graña y Carlos Chiesa. (organizado e invitado por merc salud)
• IWINAC 2017 - La Coruña, Galicia, Spain
• CORES 2017 - Polanica-Zdroj, Poland
• Inmed 2016 - Tenerife, Canary Islands, Spain
• PyconSette - Florence, Italy
• Inmed 2015 - Tokyo, Japan
• CORES 2015 - Wroclaw, Poland
• Big Data meets Machine Learning 2015 - Wroclaw, Poland
• EuroPython 2014 - Berlin, Germany

SUBPAGES

1. Interesting links and projects
2. Media appearances

Research Areas

• Pattern recognition applied to medical images
• Medical image processing
• Radiomics
• Omics

Pending Tasks

• Save the world

Leisure Time

"We are here on Earth to fart around, and don't let anybody tell you different." - Kurt Vonnegut

• Ordago movie Codirector (Canceled)