Usuario:Daria.chizhik

Darya Chyzhyk

“Little by little, one travels far”. ― J.R.R. Tolkien.

Google Scholar

ResearchGate

ORCID identifier is 0000-0002-9333-6122

Personal data

Ph.D. in Computer Science Thesis title: Contributions of Lattice Computing to Medical Image Processing Thesis advisor: Manuel Graña Romay Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad Slides of the Thesis

Contact data

• E-mail: darya.chyzhyk@ehu.es
• Phone number: 0034 943 01 8047
• Address:
  • Darya Chyzhyk
  • Computational Intelligence Group
  • Computer Science Faculty - Lab. 307
  • University Of The Basque Country (UPV/EHU)
  • Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain

Reseach Areas

Medical Image Analysis, Machine learning and Image Processing.

Publicaciones

Publicaciones internas

• Trabajo sobre reconocimiento visual del alfabeto dactilológico

• Feature extraction from structural MRI images based on VBM: data from OASIS database

2017

Manuel Graña, Leire Ozaeta, Darya Chyzhyk

Dynamic Causal Modeling and Machine Learning for Effective Connectivity in Auditory Hallucination

Neurocomputing

JCR (2014) 2.083 (Q2 CSAI) (2015) 2.392 (Q1 CSAI) (2016) 3.317

2016

Manuel Graña, Darya Chyzhyk

Image Understanding Applications of Lattice Auto-Associative Memories

IEEE Transactions on Neural Networks and Learning Systems, (aceptdo 24 julio 2015) Volume: 27, Issue: 9, Sept. 2016 pp.1920 - 1932 [online]

DOI 10.1109/TNNLS.2015.2461451

JCR (2014) 4.291 (Q1 CSAI) (2015) 4.854

2015

Ariadna Besga, Itxaso Gonzalez, Enrique Echeburua, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose L. M. Madrigal, Juan C. Leza, Manuel Graña, Ana Maria Gonzalez-Pinto

Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis

Frontiers in Aging Neuroscience, 2015 (7): 00231. JCR (2014) 4. ISSN=1663-4365

Manuel Graña, Darya Chyzhyk

Image Understanding Applications of Lattice Autoassociative Memories

IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X

Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto

Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer's Disease and Late Onset Bipolar Disorder, (PubMed) pdf

Current Alzheimer Research, 2015. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)

Darya Chyzhyk, Alexandre Savio, Manuel Graña

Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM

Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080

Chyzhyk D, Graña M, Öngür D, Shinn AK.

Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI.

International journal of neural systems, 25(3):1550007, 2015. pdf JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462

Leire Ozaeta, Darya Chyzhyk, Manuel Graña

Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine, Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. Ferrández Vicente, J.M., Álvarez-Sánchez, J.R., de la Paz López, F., Toledo-Moreo, F.J., Adeli, H. (Eds.), ISBN 978-3-319-18914-7. IWINAC 2015, Elche, 1-5 Junio 2015

Darya Chyzhyk, Manuel Graña

¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?

Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014

Darya Chyzhyk, Manuel Graña

Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [1]

Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312

Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña (pdf)

An active learning approach for stroke lesion segmentation on multimodal MRI data

Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)

Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña

Late Onset Bipolar Disorder Versus Alzheimer Disease pdf

Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)

2014

Manuel Graña and Darya Chyzhyk

One side lattice memory reduced ordering function allows discrimination in resting state fMRI

Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584

IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, link

Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur

Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI

NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain.

Ponencia: poster

Darya Chyzhyk and Manuel Graña

Findings in resting-state fMRI by differences from K-means clustering

Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428

InMed, 9-11 July, 2014, San-Sebstian, Spain

Alexandre Savio, Darya Chyzhyk, Manuel Graña

Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI

Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014

9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.

Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1

Darya Chyzhyk, Alexandre Savio, Manuel Graña,

Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI pdf

Neurocomputing, Volume 128, 27 March 2014, Pages 73-80,

ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.

JCR (2012) 1.634 (T1, Q2 CSAI)

2013

Darya Chyzhyk and Manuel Graña

Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI

J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)

Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0

ISSN 0302-9743

M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila

Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry

J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)

Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0

ISSN 0302-9743

Darya Chyzhyk, Borja Ayerdi, Josu Maiora

Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation

Pattern Recognition Letters 34 (2013), pp. 1602-1608

DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655

JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)

Darya Chyzhyk, Manuel Graña

Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. pdf

Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.

Communications in Computer and Information Science Volume 246, 2013, pp 136-142

DOI 10.1007/978-3-642-42017-7_10

Print ISBN 978-3-642-42016-0

Online ISBN 978-3-642-42017-7

Series ISSN 1865-0929

Darya Chyzhyk and Manuel Graña

Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features Slides

J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)

Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5

ISSN: 0302-9743

DOI 10.1007/978-3-642-40846-5_48

ELM -> Applied Soft Computing

HIS SI -> TNNLS

2012

Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña

A Novel Lattice Associative Memory Based on Dendritic Computing" draft

Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. Slides

Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209

ISBN: 978-3-642-28930-9

Darya Chyzhyk, Alexandre Savio and Manuel Graña

Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI,

ELM 2012, Singapore, 11-13 December 2012

Darya Chyzhyk

Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features

Advances in Knowledge-Based and Intelligent Information and Engineering Systems.

Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.

Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.

Manuel Graña, Darya Chyzhyk

Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery

HIS 2012, Pune India, 4-7 december 2012 slides

Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012

DOI: 10.1109/HIS.2012.6421391

Print ISBN: 978-1-4673-5114-0

2011

Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora

Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. PDF

Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77

doi:10.1016/j.neucom.2011.02.024

ISSN 0925-2312

ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440

Darya Chyzhyk, Ann K. Shinn, and Manuel Graña

Exploration of LICA Detections in Resting State fMRI. draft

4th. International work-Conference on the Interplay between Natural and Artificial Computation (IWINAC 2011), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.

Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111,

ISBN: 978-3-642-21325-0

Darya Chyzhyk, Manuel Graña

Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. draft. slides.

Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.

Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57

Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak

Publisher: Springer Berlin / Heidelberg

ISBN: 978-3-642-19643-0

2010

Darya Chyzhyk, Maite Termenon, and Alexandre Savio

A Comparison of VBM results by SPM, ICA and LICA.

Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2

ISBN 978-3-642-13802-7

Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández

Lattice Independent Component Analysis for functional Magnetic Resonance Imaging DRAFT

Information Sciences 181, issue 10, 2011, pp. 1910-1928

Impact factor JCR (2008): 3.095 (2009) 3.291

DOI

Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua

Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI

Computers in Biology and Medicine 41 (2011), pp. 600-610 DOI ISSN: 0010-4825

ISI Impact JCR (2009) 1.269 (2010) 1.112

Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain

Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI

in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101

2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8

Chyzhyk, D. and Savio, A.

Feature extraction from structural MRI images based on VBM: data from OASIS database

Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010

2009

Darya Chyzhyk

Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry).

III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0

Activities

Project Reviwer

• Czech Health Research Council for Ministry of Health of the Czech Republic

Reviews

• Neurocomputing 2012
• Journal of Mathematical Imaging and Vision
• HAIS 2010
• An International Journal on Multi-Sensor, Multi-Source Information Fusion
• Pattern Recognition Letters
• Neurocomputing 2013
• Computers in Biology and Medicine

Organizer

• Local organizing committee member of the
  • 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.
  • 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – (KES 2012) 10, 11 & 12 September 2012, San Sebastian, Spain.
• Programme committee member of the
  • CASoN-2011, NWeSP-2011, NaBIC-2011
  • HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012
  • KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013
  • WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014

Internship

• University of Florida.

Department of Computer &Information Science & Engineering

Responsable investigator: Professor Gerhard X. Ritter

September 15th – December 15th, 2011

• Radboud University

Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science

Responsable investigator: Professor Tom Heskes

1st of November 2012 – 30th of January 2013

Research projects participation

• Project Title: Computational Intelligence techniques for brain imaging and the neurosciences
  • Organism: University of Basque Country
  • Reference: MICINN Project, TIN2011-23823
  • Principal Investigator: Prof. Manuel Graña Romay
  • Date: 2011 – 2013.

Courses

• FSL & FreeSurfer Course 2010

Heidelberg, Germany

31 May - 4 June 2010

• Course on Statistical Parametric Mapping (SPM)

Zurich, Switzerland

16-18 February 2011

• International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)

European Centre of Soft Computing, Mieres, Spain

4-8 July 2011

Experiencia en organización de actividades de I+D

• Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España
• Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España
• XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro
• X Semana de la Ciencia 2010, Stand: Mundo virtual
• IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro

Congress of interest

• HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.

http://hais.usal.es/

• ISBI 2012, 2-5 May, Barcelona, Spain.

http://www.biomedicalimaging.org/index.php/authors/call-for-papers

• ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !

http://www.esann.org/

• Neuroinformatics 2012, Munich, Germany, September 10-12

http://www.neuroinformatics2012.org/ deadline February - April, 2012

• MICCAI 2013

16th International Conference on Medical Image Computing and Computer-Assisted Intervention 21 September 2013 - 26 September 2013 Nagoya, Japan http://www.miccai.org/

• | M-BIC Workshop Series, rsfMRI
• ISBI

|ISBI

• ICIP

20th IEEE International Conference on Image Processing ICIP 16 September 2013 - 18 September 2013 Melbourne, VIC, Australia

• Toolkit of Cognitive Neuroscience Cognitive Neuroscience

Images

• fMRI
• sMRI
• Resting-state fMRI
  • REST
  • MELODIC
  • CMI Resting State fMRI Library
  • 8 popular networks
• DTI
  • The CMI Diffusion Tensor Imaging Library
• Nipype , congreso con traspas
• mindboggle
• RSN: functional_ROIs

TFMs resting-state-fmri-templates FSL:brainmap+rsns icatb-discuss

• Multimodal data, controls, here

Data base

• Alzheimer's disease, OASIS
• Schizophrenia
• Cocainomania
• Schizophrenia NAMIC
• 2012 Neuroimage Sample
• Manually labeled human brain image data
• Autism Abide

Soft

• SPM
• FSL
  • MELODIC
  • FreeSurfer Instalation1
  • FslView Install with Debian
• REST, DPARSF
• Brain Connectivity Toolbox
• GIFT - ICA toolbox
• AFNI
• Anatomy of the brain de prepago :(
• LIPSIA User Manual, Leipzig Image Processing and Statistical Inference Algorithms
• Pattern Recognition Toolbox Pattern Recognition Toolbox
• Pipeline toolbox for analyzing brain diffusion images PANDA
• fieldtrip
• ConnectomeViewermat -> nii
• Automated Anatomical labeling
  • xjview8
  • SPMAnatomyToolbox
  • automatic atlas queries in fsl
• Pattern Recognition for Neuroimaging Toolbox (PRoNTo)
• FC
  • econnectome
  • HCP
  • Functional Network Connectivity (FNC)
  • functional connectivity toolbox
• diagramas de flujo xmind
• Bayesian spatial model for activation and connectivity BSMAC
• Brain Explorer brain-map
• Normalization
  • Advanced Normalization Tool ANTs
• Multi-image Analysis GUI Mango

Grants

• Beca FPU 2009-2013

• Infornacion general

Ayudas postdoctorales UPV

Estado burocrático de la tesis

Director - Manuel Graña Romay

beca concedida desde agosto 2009

Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010

Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral

Friday sessions

Friday sessions

tareas pendientes

1 -Reformato de imagenes[2], funcionales, fMRI

• coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.

• usar MRIcron[3] para pasar de formato DICOM a NIfTI (imagen final 4D)

• ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)

• Comprobar que se puede trabajar con el SPM5[4] y las imágenes NIfTI que hemos generado.

2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.

• Funciones a utilizar (dicominfo y dicomread)

• | DARTEL
• | Embajada E.E.U.U

Doubt

• “Open with” (user defined command) Ubuntu 12.10 Tweak - file manager
• NIF de la Uni Q4818001B
• fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii

 fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii

• fsl install debian

sudo apt-get install fsl-complete

nano .bashrc 

sudo apt-get install ssh vim gedit-plugins

• not found fsl function

http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup

• instalar python python segun Alex

Grants

• NARSAD Grant

master

• sMRI video
• Alzheimer, atrofia
• fMRI,stimulus , video
• Ensemble
• resting state fMRI, video

.

• inria
• upf
• lucca
• brainmapping, ucla

+ LabNic, geneva

• Thomas H Mareci.Frank J Bova.

Grants

• NARSAD Grant