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Contribuciones del usuario
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Usuario:Daria.chizhik
2019-01-17T15:02:54Z
<p>Chyzhyk.darya: subir pdf del articulo</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2018==<br />
<br />
<br />
<br />
==2017==<br />
<br />
; Manuel Graña, Leire Ozaeta, Darya Chyzhyk<br />
: Dynamic Causal Modeling and Machine Learning for Effective Connectivity in Auditory Hallucination<br />
: Neurocomputing <br />
: JCR (2014) 2.083 (Q2 CSAI) (2015) 2.392 (Q1 CSAI) (2016) 3.317<br />
==2016==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Auto-Associative Memories <br />
: IEEE Transactions on Neural Networks and Learning Systems, (aceptdo 24 julio 2015) Volume: 27, Issue: 9, Sept. 2016 pp.1920 - 1932 [[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7210195 online]]<br />
: DOI 10.1109/TNNLS.2015.2461451<br />
: JCR (2014) 4.291 (Q1 CSAI) (2015) 4.854<br />
<br />
==2015==<br />
<br />
; Ariadna Besga, Itxaso Gonzalez, Enrique Echeburua, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose L. M. Madrigal, Juan C. Leza, Manuel Graña, Ana Maria Gonzalez-Pinto<br />
: Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis<br />
: Frontiers in Aging Neuroscience, 2015 (7): 00231. JCR (2014) 4. ISSN=1663-4365<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer's Disease and Late Onset Bipolar Disorder, ([http://www.ncbi.nlm.nih.gov/pubmed/?term=Eigen+Anatomy+on+fractional+anisotropy+imaging+provides+white+matter# PubMed]) [[Medio: Besga-Bastera-MS.pdf|pdf]]<br />
<br />
: Current Alzheimer Research, 2015. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine, Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. Ferrández Vicente, J.M., Álvarez-Sánchez, J.R., de la Paz López, F., Toledo-Moreo, F.J., Adeli, H. (Eds.), ISBN 978-3-319-18914-7. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease [[media: 00450034.pdf|pdf]]<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
<br />
== Project Reviwer ==<br />
* Czech Health Research Council for Ministry of Health of the Czech Republic<br />
<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]<br />
<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=19492
Usuario:Daria.chizhik
2019-01-17T14:57:04Z
<p>Chyzhyk.darya: subir pdf del articulo</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2018==<br />
<br />
<br />
<br />
==2017==<br />
<br />
; Manuel Graña, Leire Ozaeta, Darya Chyzhyk<br />
: Dynamic Causal Modeling and Machine Learning for Effective Connectivity in Auditory Hallucination<br />
: Neurocomputing <br />
: JCR (2014) 2.083 (Q2 CSAI) (2015) 2.392 (Q1 CSAI) (2016) 3.317<br />
==2016==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Auto-Associative Memories <br />
: IEEE Transactions on Neural Networks and Learning Systems, (aceptdo 24 julio 2015) Volume: 27, Issue: 9, Sept. 2016 pp.1920 - 1932 [[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7210195 online]]<br />
: DOI 10.1109/TNNLS.2015.2461451<br />
: JCR (2014) 4.291 (Q1 CSAI) (2015) 4.854<br />
<br />
==2015==<br />
<br />
; Ariadna Besga, Itxaso Gonzalez, Enrique Echeburua, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose L. M. Madrigal, Juan C. Leza, Manuel Graña, Ana Maria Gonzalez-Pinto<br />
: Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis<br />
: Frontiers in Aging Neuroscience, 2015 (7): 00231. JCR (2014) 4. ISSN=1663-4365<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer's Disease and Late Onset Bipolar Disorder, ([http://www.ncbi.nlm.nih.gov/pubmed/?term=Eigen+Anatomy+on+fractional+anisotropy+imaging+provides+white+matter# PubMed]) [[media: Chyzhyk-Besga-Bastera-MS.pdf|pdf]]<br />
: Current Alzheimer Research, 2015. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine, Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. Ferrández Vicente, J.M., Álvarez-Sánchez, J.R., de la Paz López, F., Toledo-Moreo, F.J., Adeli, H. (Eds.), ISBN 978-3-319-18914-7. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease [[media: 00450034.pdf|pdf]]<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
<br />
== Project Reviwer ==<br />
* Czech Health Research Council for Ministry of Health of the Czech Republic<br />
<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]<br />
<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Archivo:Besga-Bastera-MS.pdf&diff=19491
Archivo:Besga-Bastera-MS.pdf
2019-01-17T14:55:25Z
<p>Chyzhyk.darya: </p>
<hr />
<div></div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=19419
Usuario:Daria.chizhik
2018-09-19T14:20:23Z
<p>Chyzhyk.darya: publicaciones 2017</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2018==<br />
<br />
<br />
<br />
==2017==<br />
<br />
; Manuel Graña, Leire Ozaeta, Darya Chyzhyk<br />
: Dynamic Causal Modeling and Machine Learning for Effective Connectivity in Auditory Hallucination<br />
: Neurocomputing <br />
: JCR (2014) 2.083 (Q2 CSAI) (2015) 2.392 (Q1 CSAI) (2016) 3.317<br />
==2016==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Auto-Associative Memories <br />
: IEEE Transactions on Neural Networks and Learning Systems, (aceptdo 24 julio 2015) Volume: 27, Issue: 9, Sept. 2016 pp.1920 - 1932 [[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7210195 online]]<br />
: DOI 10.1109/TNNLS.2015.2461451<br />
: JCR (2014) 4.291 (Q1 CSAI) (2015) 4.854<br />
<br />
==2015==<br />
<br />
; Ariadna Besga, Itxaso Gonzalez, Enrique Echeburua, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose L. M. Madrigal, Juan C. Leza, Manuel Graña, Ana Maria Gonzalez-Pinto<br />
: Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis<br />
: Frontiers in Aging Neuroscience, 2015 (7): 00231. JCR (2014) 4. ISSN=1663-4365<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer's Disease and Late Onset Bipolar Disorder, ([http://www.ncbi.nlm.nih.gov/pubmed/?term=Eigen+Anatomy+on+fractional+anisotropy+imaging+provides+white+matter# PubMed])<br />
: Current Alzheimer Research, 2015. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine, Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. Ferrández Vicente, J.M., Álvarez-Sánchez, J.R., de la Paz López, F., Toledo-Moreo, F.J., Adeli, H. (Eds.), ISBN 978-3-319-18914-7. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease [[media: 00450034.pdf|pdf]]<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
<br />
== Project Reviwer ==<br />
* Czech Health Research Council for Ministry of Health of the Czech Republic<br />
<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]<br />
<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18837
Usuario:Daria.chizhik
2016-09-01T18:49:01Z
<p>Chyzhyk.darya: </p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2016==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Auto-Associative Memories <br />
: IEEE Transactions on Neural Networks and Learning Systems, (aceptdo 24 julio 2015) Volume: 27, Issue: 9, Sept. 2016 pp.1920 - 1932 [[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7210195 online]]<br />
: DOI 10.1109/TNNLS.2015.2461451<br />
: JCR (2014) 4.291 (Q1 CSAI) (2015) 4.854<br />
<br />
==2015==<br />
<br />
; Ariadna Besga, Itxaso Gonzalez, Enrique Echeburua, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose L. M. Madrigal, Juan C. Leza, Manuel Graña, Ana Maria Gonzalez-Pinto<br />
: Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis<br />
: Frontiers in Aging Neuroscience, 2015 (7): 00231. JCR (2014) 4. ISSN=1663-4365<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer's Disease and Late Onset Bipolar Disorder, ([http://www.ncbi.nlm.nih.gov/pubmed/?term=Eigen+Anatomy+on+fractional+anisotropy+imaging+provides+white+matter# PubMed])<br />
: Current Alzheimer Research, 2015. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine, Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. Ferrández Vicente, J.M., Álvarez-Sánchez, J.R., de la Paz López, F., Toledo-Moreo, F.J., Adeli, H. (Eds.), ISBN 978-3-319-18914-7. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease [[media: 00450034.pdf|pdf]]<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
<br />
== Project Reviwer ==<br />
* Czech Health Research Council for Ministry of Health of the Czech Republic<br />
<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]<br />
<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18339
Usuario:Daria.chizhik
2015-12-14T19:07:47Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Ariadna Besga, Itxaso Gonzalez, Enrique Echeburua, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose L. M. Madrigal, Juan C. Leza, Manuel Graña, Ana Maria Gonzalez-Pinto<br />
: Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis<br />
: Frontiers in Aging Neuroscience, 2015 (7): 00231. JCR (2014) 4. ISSN=1663-4365<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer's Disease and Late Onset Bipolar Disorder, ([http://www.ncbi.nlm.nih.gov/pubmed/?term=Eigen+Anatomy+on+fractional+anisotropy+imaging+provides+white+matter# PubMed])<br />
: Current Alzheimer Research, 2015. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine, Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. Ferrández Vicente, J.M., Álvarez-Sánchez, J.R., de la Paz López, F., Toledo-Moreo, F.J., Adeli, H. (Eds.), ISBN 978-3-319-18914-7. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease [[media: 00450034.pdf|pdf]]<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
<br />
== Project Reviwer ==<br />
* Czech Health Research Council for Ministry of Health of the Czech Republic<br />
<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]<br />
<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18337
Usuario:Daria.chizhik
2015-12-14T19:07:33Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Ariadna Besga1, Itxaso Gonzalez, Enrique Echeburua, Alexandre Savio, Borja Ayerdi, Darya Chyzhyk, Jose L. M. Madrigal, Juan C. Leza, Manuel Graña, Ana Maria Gonzalez-Pinto<br />
: Discrimination between Alzheimer’s Disease and Late Onset Bipolar Disorder using multivariate analysis<br />
: Frontiers in Aging Neuroscience, 2015 (7): 00231. JCR (2014) 4. ISSN=1663-4365<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer's Disease and Late Onset Bipolar Disorder, ([http://www.ncbi.nlm.nih.gov/pubmed/?term=Eigen+Anatomy+on+fractional+anisotropy+imaging+provides+white+matter# PubMed])<br />
: Current Alzheimer Research, 2015. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine, Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. Ferrández Vicente, J.M., Álvarez-Sánchez, J.R., de la Paz López, F., Toledo-Moreo, F.J., Adeli, H. (Eds.), ISBN 978-3-319-18914-7. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease [[media: 00450034.pdf|pdf]]<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
<br />
== Project Reviwer ==<br />
* Czech Health Research Council for Ministry of Health of the Czech Republic<br />
<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]<br />
<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18317
Usuario:Daria.chizhik
2015-11-28T05:00:53Z
<p>Chyzhyk.darya: /* Activities */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer's Disease and Late Onset Bipolar Disorder, ([http://www.ncbi.nlm.nih.gov/pubmed/?term=Eigen+Anatomy+on+fractional+anisotropy+imaging+provides+white+matter# PubMed])<br />
: Current Alzheimer Research, 2015. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine, Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. Ferrández Vicente, J.M., Álvarez-Sánchez, J.R., de la Paz López, F., Toledo-Moreo, F.J., Adeli, H. (Eds.), ISBN 978-3-319-18914-7. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease [[media: 00450034.pdf|pdf]]<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
<br />
== Project Reviwer ==<br />
* Czech Health Research Council for Ministry of Health of the Czech Republic<br />
<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]<br />
<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18287
Usuario:Daria.chizhik
2015-11-23T00:03:54Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: Eigenanatomy on fractional anisotropy imaging provides white matter anatomical features discriminating between Alzheimer's Disease and Late Onset Bipolar Disorder, ([http://www.ncbi.nlm.nih.gov/pubmed/?term=Eigen+Anatomy+on+fractional+anisotropy+imaging+provides+white+matter# PubMed])<br />
: Current Alzheimer Research, 2015. JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine, Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. Ferrández Vicente, J.M., Álvarez-Sánchez, J.R., de la Paz López, F., Toledo-Moreo, F.J., Adeli, H. (Eds.), ISBN 978-3-319-18914-7. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease [[media: 00450034.pdf|pdf]]<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]<br />
<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18237
Usuario:Daria.chizhik
2015-10-21T18:30:45Z
<p>Chyzhyk.darya: </p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine, Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. Ferrández Vicente, J.M., Álvarez-Sánchez, J.R., de la Paz López, F., Toledo-Moreo, F.J., Adeli, H. (Eds.), ISBN 978-3-319-18914-7. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease [[media: 00450034.pdf|pdf]]<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]<br />
<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18235
Usuario:Daria.chizhik
2015-10-21T18:29:50Z
<p>Chyzhyk.darya: /* Doubt */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine, Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. Ferrández Vicente, J.M., Álvarez-Sánchez, J.R., de la Paz López, F., Toledo-Moreo, F.J., Adeli, H. (Eds.), ISBN 978-3-319-18914-7. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease [[media: 00450034.pdf|pdf]]<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.<br />
<br />
=Grants=<br />
* [https://bbrfoundation.org/frequently-asked-questions NARSAD Grant]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Ponencias_en_congresos&diff=18153
Ponencias en congresos
2015-09-23T14:22:23Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>==2015==<br />
<br />
* Darya Chyzhyk, Manuel Graña, ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional? Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
* Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña, Late Onset Bipolar Disorder Versus Alzheimer Disease, InMed 2015, Kyoto, Japan, 11-12 September 2015<br />
<br />
* Eider Sanchez, Carlos Toro, Manuel Graña, Integrating Electronic Health Records in Clinical Decision Support Systems, InMed 2015 <br />
<br />
* Jose Manuel Lopez-Guede and Manuel Graña, Knowledge modeling by ELM in RL for SRHT problem, CSCC 2015<br />
<br />
*Borja Ayerdi, Oier Echaniz, Alexandre Savio, Manuel Graña, Automated segmentation of subcutaneous and visceral adipose tissues from MRI. InMed 2015, Kyoto, [http://inmed-15.inmedhealth.org]<br />
<br />
* Jose Manuel Lopez-Guede, Aitor Moreno-Fernandez-de-Leceta, Manuel Graña, Behavior prediction in home telecare systems, AICT 2015<br />
<br />
* Pawel Ksieniewicz, Manuel Grana and Michal Wozniak, Blurred labeling segmentation algorithm for hyperspectral images, ICCCI 2015, [http://antares.sip.ucm.es/iccci2015/]<br />
<br />
* Ion Marqués, Manuel Graña, Stephanie M. Sanchez, Mohammed Q. Alkhatib and Miguel Velez-Reyes. Skin segmentation by active learning for human detection in hyperspectral images, Algorithms and Technologies for Multispectral, Hyperspectral, and Ultraspectral Imagery XXI, [http://spie.org/DEF/conferencedetails/algorithms-multispectral-hyperspectral-ultraspectral-imagery], 21 april 2015, Baltimore,<br />
<br />
* Jose Manuel Lopez-Guede, Manuel Graña, Neural modeling of hose dynamics to speedup Reinforcement Learning experiments, IWINAC 2015<br />
<br />
* Manuel Graña, Ion Marques, Experiments of skin detection in hyperspectral images, IWINAC 2015<br />
<br />
*Jose Manuel Lopez-Guede, Julián Estévez, Manuel Graña, Reinforcement Learning in Single Robot Hose Transport Task: A Physical Proof of Concept, SOCO 2015,<br />
<br />
*Leire Ozaeta, Darya Chyzhyk, Manuel Graña, Some Results on Dynamic Causal Modeling of Auditory Hallucinations, IWINAC 2015, Elche, Junio 2015<br />
<br />
*Aitor Moreno-Fernandez-De-Leceta, Unai Arenal Gómez, Jose Manuel Lopez-Guede and Manuel Grana, Real implantation of an expert system for elderly home care, HAIS 2015, Bilbao<br />
<br />
== 2014 ==<br />
<br />
<br />
*Ion Marques and Manuel Graña "Sparse unmixing via WM algorithm for hyperspectral images", WHISPERS 2014, 24-27 junio, Lausanne, Switzerland<br />
<br />
* Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche and Amaury Lendasse, "Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification" ELM 2014, Singapore, December 2014, [http://ntu.edu.sg/home/egbhuang/elm2014/]<br />
<br />
* Borja Ayerdi, Manuel Graña "Hyperspectral Image Nonlinear Unmixing by Ensemble ELM Regression" ELM 2014, Singapore, December 2014, [http://ntu.edu.sg/home/egbhuang/elm2014/]<br />
<br />
* Manuel Graña, J. David Nuñez-Gonzalez "An instance of social intelligence in the internet of things: bread making recipe recommendation by ELM Regression", ELM 2014, Singapore, December 2014, [http://ntu.edu.sg/home/egbhuang/elm2014/]<br />
<br />
* J David Nuñez-Gonzalez, Manuel Graña, "On the effect of high order reputation information on Trust Prediction in Wikipedia’s Vote Network," ENIC 2014, [http://www.enic.pwr.wroc.pl/], september, 29-30, Wroclaw, Poland<br />
<br />
* Borja Fernandez-Gauna, Manuel Graña, "Recipe tuning by Reinforcement Learning in the SandS ecosystem", CASON 2014, Porto, Portugal, 31 julio, 2014, [[media:CASON-2014-M-Grana-slides.pdf|slides]]<br />
<br />
* Manuel Graña and Darya Chyzhyk, "One side lattice memory reduced ordering function allows discrimination in resting state fMRI", : IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China<br />
<br />
* Darya Chyzhyk and Manuel Graña "Findings in resting-state fMRI by differences from K-means clustering", InMed, 9-11 July, 2014, San-Sebastian, Spain<br />
<br />
*J. Maiora, G.A. Papakostas, B. Ayerdi, V.G. Kaburlasos, M. Grana, Active Learning with Texture Features for Computed Tomography Image Segmentation, InMed, 9-11 July, 2014, San-Sebastian, Spain<br />
<br />
* Ariadna Besga, Manuel Graña, Ana Gonzalez-Pinto, Itxaso Gonzalez-Ortega & Alexandre Savio "Observation of Genotype-Phenotype interaction effects on White Matter in Alzheimer Disease and Bipolar Disorder: a randomized controlled trial", NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. Ponencia: poster<br />
<br />
* Alexandre Savio & Manuel Graña "Brain Cloud Computing: Brain image pre-processing made easy and boring", NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. Ponencia: poster<br />
<br />
* Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur "Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI", NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. Ponencia: poster<br />
<br />
* Rosalia Dacosta, Manuel Graña & María Mataro "Functional, structural and metabolic remodeling related to cognitive recovery in ischemic stroke patients", NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. Ponencia: poster<br />
<br />
* Alexandre Savio, Darya Chyzhyk, Manuel Graña "Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI", HAIS 2014, Salamanca, 11-13 Junio<br />
<br />
*Ion Marques, Manuel Graña, "Hybrid Sparse Linear and Lattice Method for Hyperspectral Image Unmixing", HAIS 2014, Salamanca, 11-13 Junio, [[media:HAIS-2014-Ion-presentacion.pdf|slides]]<br />
<br />
*Dacosta-Aguayo R, Graña M, Iturria-Medina Y, Fernández-Andújar M, López-Cancio E, Cáceres C, Bargalló N, Barrios M, Clemente IC, Millán M, Dávalos A, Maria M<br />
:Impairment of Functional Integration of the Default Mode Network related to Cognitive Outcome in Stroke Patients at three months<br />
:European Stroke Conference (ESC). Nice, Mayo, 6-9, 2014. Comunicación aceptada pendiente de realización. <br />
<br />
*Dacosta-Aguayo R, Graña M, Falcón C, Fernández-Andújar M, López-Cancio E, Cáceres C, Bargalló N, Barrios M, Clemente IC, Toran Pere, Fores-Raurell Rosa, Dávalos A, Mataró M <br />
:Metabolic Imbalance, Default Mode Network Activity and White Matter Integrity in the healthy contralesional hemisphere related to Cognitive Outcome in Stroke Patients<br />
:The 8th Annual Canadian Neuroscience Meeting (CAN). Montreal, Mayo 24-28, 2014<br />
<br />
*Dacosta-Aguayo R, Graña M, Savio A, Iturria-Medina Y, Fernández-Andújar M, López-Cancio E, Cáceres C, Bargalló N, Barrios M, Clemente IC, Millán M, Dávalos A, Mataró M <br />
:Cognitive/Clinical States in Stroke Patients are Associated to Different Anatomical Connectivity Patterns <br />
:Organization for Human Brain Mapping (OHBM). Hamburg, June, 8-12, 2014<br />
<br />
* Effect of Initial Conditioning of Reinforcement Learning Agents on Feedback Control tasks over Continuous State and Action Spaces, Borja Fernandez-Gauna, Juan Luis Osa and Manuel Graña, SOCO 2014, Salamanca, Spain<br />
* Experiments on Trust Prediction based on reputation features, J. David Nuñez-Gonzalez and Manuel Grana, CISIS 2014 [http://www.ehu.es/ccwintco/index.php/Archivo:CISIS2014.pptx slides]<br />
<br />
== 2013 ==<br />
<br />
* ''Low-cost platforms used in Control Education: An educational case study. '' Eloy Irigoyen, Ekaitz Larzabal, Rafael Priego, ACE 2013, Sheffield, England, 28-30 August [http://www.ehu.es/ccwintco/uploads/8/84/Presentacion_ACE2013_Eloy_Irigoyen.pdf slides]<br />
<br />
* ''Microcontroller Implementation of a Multi Objective Genetic Algorithm for Real-Time Intelligent Control. '' Martin Dendaluce, Juan José Valera, Vicente Gómez-Garay, Eloy Irigoyen, Ekaitz Larzabal, SOCO 2013, Salamanca, 11-13 September [http://www.ehu.es/ccwintco/uploads/8/85/PRESENTACION_SOCO2013_Eloy_Irigoyen.pdf slides]<br />
<br />
* ''A domestic application of Intelligent Social Computing: the SandS project'' Manuel Graña, Ion Marqués, Alexandre Savio, Bruno Apolloni, SOCO 2013, Salamanca, 11-13 September [http://www.ehu.es/ccwintco/uploads/e/e6/Pres_soco2013_Ion_Marques.pdf slides]<br />
<br />
* ''Structural integrity of the contralesional hemisphere in chronic stroke patients: useful biomarkers of cognitive impairment'' Dacosta-Aguayo R, Graña M, Fernández-Andújar M, López-Cancio E, Cáceres C, Bargalló N, Barrios M, Clemente IC, Dávalos A, Tibor A, Mataró M, ICVD 2013, Athens, Greece 17-21 October<br />
<br />
* ''Structural Damage to the Posterior Limb of Internal Capsule in stroke patients and its association with cognitive functions'' Dacosta-Aguayo R, Graña M, Tibor A, Fernández-Andújar M, Millán M, López-Cancio E, Cáceres C, Bargalló N, Barrios M, Clemente IC, Garolera M, Hernández M, Munuera J, Dávalos A, Mataró M, FESN 2013, Berlin, Germany 12-14 September<br />
<br />
* ''Remote thalamic microstructural abnormalities related to cognitive function in ischemic stroke patients'' Marina Fernández-Andújar, Fleur Doornink, Rosalia Dacosta-Aguayo, Júlia Miralbell, Juan José Soriano-Raya, Natalia Pérez de la Ossa, Maite Barrios, Cynthia Cáceres, Imma Clemente, Antoni Dávalos, Maria Mataró, ICVD 2013, Athens, Greece 17-21 October<br />
<br />
* ''Changes in resting-state functional connectivity predict cognitive recovery after stroke'' Dacosta-Aguayo R, Graña M, Tibor A, Fernández-Andújar M, Millán M, López-Cancio E, Cáceres C, Bargalló N, Barrios M, Clemente IC, Dávalos A, Mataró M, Sesión Inter-Hospitalaria Expertos en Patología Vascular de Cataluña 2013, Mataro, Barcelona 3 May<br />
<br />
* ''Clustering of anonymized users in an enterprise intranet social network'' Israel Rebollo-Ruiz , Manuel Graña SOCO 2013, Salamanca, 11-13 September. Advances in Intelligent Systems and Computing Volume 239, 2014, pp 229-236 [http://www.ehu.es/ccwintco/uploads/1/17/Presentacion_SOCO2013-Israel.pdf slides]<br />
* ''Artificial Neural Network modeling of a photovoltaic module'' Jose Manuel Lopez-Guede, Jose Antonio Ramos-Hernanz , Manuel Graña SOCO 2013, Salamanca, 11-13 September [http://www.ehu.es/ccwintco/uploads/7/74/Slides_SOCO2013-LopezGuede.pdf slides]<br />
* ''Enhancing Active Learning Computed Tomography Image Segmentation with Domain Knowledge'' Borja Ayerdi, Josu Maiora, Manuel Graña, HAIS 2013, Salamanca, 11-13 September [http://www.ehu.es/ccwintco/uploads/6/60/HAIS13_ayerdi.pdf slides]<br />
* ''A discussion on trust requirements for a social network of eahoukers'' Manuel Graña, J. David Nuñez-Gonzalez, Bruno Apolloni, HAIS 2013, Salamanca, Spain, 11-13 September [http://www.ehu.es/ccwintco/uploads/6/65/HAIS2013%2895%29.pptx slides_pptx] [http://www.ehu.es/ccwintco/uploads/3/3c/HAIS2013%2895%29.pdf slides_pdf]<br />
* ''Empirical study of the sensitivity of CACLA to sub-optimal parameter setting in learning feedback controllers'' Borja Fernandez-Gauna, Igor Ansoategui, Ismael Etxeberria-Agiriano, Manuel Graña, SOCO 2013, Salamanca, Spain, 11-3 September [http://www.ehu.es/ccwintco/uploads/7/70/SOCO13_-_slides_-_Borja.pdf slides]<br />
* ''Convergence results on the stable states of a Gravitational Swarm solving the Graph Coloring Problem'' Manuel Graña, Israel Rebollo, CASON 2013, Fargo, ND, 13 julio 2013<br />
* ''Subconscious Social Computational Intelligence'' M. Graña, ICCC 2013, Coimbatore, India<br />
* ''Convergence results on the stable states of a Gravitational Swarm solving the Graph Coloring Problem'', Manuel Graña, Israel Rebollo, NABIC 2013, Fargo, ND, 13 julio 2013, [[media:NABIC-israel-GS-GC-slides.pdf|slides]]<br />
*''ELM for Retinal Vessel Classification'' Iñigo Barandiaran, Odei Maiz, Ion Marques, Jurgui Ugarte, and Manuel Grana, ELM 2013, Beijing, CHina. [http://www.ntu.edu.sg/home/egbhuang/ELM2013/]<br />
* ''Spectral-spatial semi-supervised hyperspectral image segmentation using Ensembles of Extreme Learning Machines'' Borja Ayerdi, Ion Marqués, Manuel Graña, ELM 2013, Beijing, CHina.<br />
* ''Predicting Trust From Reputation in a Social Network of Reviewers by ELM'' J. David Nuñez-Gonzalez, Manuel Graña, ELM 2013, Beijing, CHina.<br />
* ''ELM approximations of L-MCRS dynamics for Reinforcement Learning experiments'' Jose Manuel Lopez-Guedea, Manuel Graña, Beijing, CHina. [http://www.ntu.edu.sg/home/egbhuang/ELM2013/]<br />
* "Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features", Darya Chyzhyk, Manuel Graña, HAIS 2013, Salamanca, Spain, 11-13 September, 2013. [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
*''GoCardio: A novel approach for mobility in cardiac monitoring'', Iker Mesa, Eider Sanchez, Javier Diaz, Carlos Toro, Arkaitz Artetxe, Manuel Graña, Frank Guijarro, César Martínez, Jose Manuel Jiménez, Jose, Antonio Alarcon & Alessandro De Mauro, InMed 2013, Pireus, Greece, 18-19 julio<br />
* ''Active Learning enhanced with Expert Knowledge for Computed Tomography Image Segmentation'', Josu Maiora, Guillermo García, Borja Ayerdi, Manuel Graña & Mariano De Blas, InMed 2013, Pireus, Greece, 18-19 julio<br />
* Development of a System for Endovacular Planning of AAA Interventions, Ivan Macia et al., MICCAI 2013, Workshop on Computer Assisted Stenting<br />
* On Spatial Regularization for Semisupervised Hyperspectral Image Segmentation Using Hybrid Extreme Rotation Forest, Borja Ayerdi and Manuel Graña, Whispers 2013, Gainesville, Fl, June 2013 [[media:Whispers-ayerdi-2013-slides.pdf|slides]]<br />
* ''Active Learning enhanced with Expert Knowledge for Computed Tomography Image Segmentation'', J. Maiora, G. García, B. Ayerdi, M. Graña, M. De Blas, INMED 2013.<br />
* ''A domestic application of Intelligent Social Computing: the SandS project.'', M. Graña, I. Marqués, A. Savio, B. Apolloni, SOCO 2013.<br />
* ''A Neural Network approximation of L-MCRS dynamics for Reinforcement Learning experiments.'', Jose Manuel Lopez-Guede, Manuel Graña, Jose Antonio Ramos-Hernanz, Fernando Oterino, IWINAC 2013, Palma de Mallorca, Spain, 10-14 June 2013<br />
* ''Greedy sparsification WM algorithm for endmember induction in hyperspectral images.'', I. Marqués, M. Graña, IWINAC 2013<br />
* ''Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry'', M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila, IWINAC 2013<br />
* ''Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI'', Darya Chyzhyk and Manuel Graña, IWINAC 2013<br />
* ''Clustering of anonymized users in an enterprise intranet social network'' I. Rebollo Ruiz and M. Grana Romay, 8th International Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO),11-13 September, Salamanca [http://soco13.usal.es] <br />
* ''User assistance tool for a WebService ERP'' I. Rebollo Ruiz and M. Grana Romay, 11th International Conference on Practical Applications of Agents and Multi-Agent Systems (PAAMS),22-24 May, Salamanca [http://www.paams.net/]<br />
* ''Social Things - The SandS instantiation'' B. Apolloni, M. Fiasche, G. Galliani, C. Zizzo, G. Caridakis, G. Siolas, S. Kollias, M. Grana Romay, F. Barriento, S. San Jose [http://www2.ing.unipi.it/iot-sos2013/]<br />
* ''Social networks of people and things: the boundary of unconscious computing'' Manuel Graña, in Social Things, FIRE pre-FIA workshops, may 7th 2013, Dublin, [http://wiki.ict-fire.eu/index.php/FIRE_at_Future_Internet_(FI)_week_in_Dublin,_Ireland,_May_7-10_2013]<br />
*''Diagnosis of Bipolar Disorder based on Principal Component Analysis and Support Vector Machines over the MRI deformation Jacobian'' M. Termenon, M. Graña, A. Besga, J. Echeveste, J. M. Pérez, A. Gonzalez-Pinto, CORES 2013 [http://cores.pwr.wroc.pl/] [[media:Presentation-CORES-2013-05-26.pdf|slides]]<br />
<br />
* "A New Evaluation Framework and Image Dataset for Key Point Extraction and Feature Descriptor Matching" Iñigo Barandiaran, Camilo Cortes, Marcos Nieto, Manuel Graña2 and Oscar Ruiz, VISAPP 2013<br />
<br />
* "DITEC: Experimental analysis of an image characterization method based on the trace transform" Igor G. Olaizola, Iñigo Barandiaran, Basilio Sierra and Manuel Graña, VISAPP 2013<br />
<br />
== 2012 ==<br />
<br />
*''Lattice Computing in Hybrid Intelligent Systems'', Manuel Graña, HIS 2012, Pune India, 4-7 december 2012 [[media:grana-presentation-HIS-Pune-2012-12-05.pdf|slides]]<br />
* ''Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery'' Manuel Graña, Darya Chyzhyk, HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]], Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, 2012. DOI: 10.1109/HIS.2012.6421391. Print ISBN: 978-1-4673-5114-0<br />
* ''Active Learning of Hybrid Extreme Rotation Forests for CTA Image Segmentation'', Borja Ayerdi, Josu Maiora, Manuel Graña, HIS 2012, Pune India, 4-7 december 2012<br />
<br />
*''Whole brain resting-state analysis in patients with first ever stroke: a functional mri study with independent component analysis (ICA)'', Dacosta-Aguayo R, Fernández-Andújar M, Millán M, Reverté S, Gomis M, López-Cancio, E, Pérez de la Osa N, Cáceres C, Bargalló N, Barrios M, Clemente IC, Dávalos A, Mataró M, INS 2012, Oslo Noruega, 27-30 june 2012<br />
<br />
*''Lesion volume effects on spontaneous whole brain bold activity fluctuations in patients with first ever stroke'', Dacosta-Aguayo R, Fernández-Andújar M, Millán M, Reverté S, Gomis M, López-Cancio, E, Pérez de la Osa N, Cáceres C, Bargalló N, Barrios M, Clemente IC, Dávalos A, Mataró M, ISON 2012, Valencia España, 18-19 October<br />
<br />
*''Thalamic anisotropy indexes and cognitive function in stroke patients'', Fernández-Andújar M, Dacosta-Aguayo R, Millán M, Reverté S, Gomis M, López-Cancio, E, Pérez de la Osa N, Cáceres C, Bargalló N, Barrios M, Clemente IC, Dávalos A, Mataró M, INS 2012, Oslo Noruega, 18-19 October<br />
<br />
*''Effects of Intracranial Pulsatility Index on cognition and white matter integrity.'', Jorge López-Olóriz, Elena López-Cancio, Juan Francisco Arenillas, Maite Barrios, Juan José Soriano-Raya, Júlia Miralbell, Rosalía Dacosta-Aguayo, Núria Bargalló, Cynthia Cáceres, Pere Torán, Maite Alzamora, Guillem Pera, Antoni Dávalos, Maria Mataró, INS 2012, Oslo Noruega, 18-19 October<br />
<br />
*''Relationship between thalamic diffusion asymmetries and cognitive function in healthy people'', Fernández-Andújar M, Dacosta-Aguayo R, Clemente I, Gomis M, López-Cancio E, Millán M, Pérez de la Ossa, Reverté S, Cáceres C, Bargalló N, Barrios M, Dávalos A, Mataró M, SEPNECA 2012, Barcelona España, 3-6 July<br />
<br />
* ''Relevance feedback by dissimilarity spaces for hyperspectral CBIR'' Miguel A Veganzones, Mihai Datcu, Manuel Graña, ESA-EUSC-JCR-IIM 2012 Image Information Mining Conference [http://rssportal.esa.int/tiki-index.php?page=ESA-EUSC-JRC-2012], German Aerospace Center (DLR), Oberpfaffenhofen, Germany, 24-26 October 2012<br />
<br />
* "Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features", Darya Chyzhyk, 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems (KES2012), San Sebastian, Spain. September 10-12th. 2012<br />
<br />
* "On hyperspectral morphology by lattice auto-associative memories supervised orderings." Miguel A. Veganzones. [http://kes2012.kesinternational.org/index.php 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems (KES2012)]. Second workshop on Hyperspectral image processing, intelligent systems for remote sensing and High Performance Computing (IS30). San Sebastian, Spain. September 10-12th. 2012. [[media:Kes2012_veganzones.pdf | slides]]<br />
<br />
* "Evolutionary ELM Wrapper Feature Selection for Alzheimer's Disease CAD on Anatomical Brain MRI", Darya Chyzhyk, Alexandre Savio, and Manuel Graña, ELM 2012, Singapore, 11-13 December 2012<br />
<br />
*"Extreme Learning Machines for Soybean classification in remote sensing Hyperspectral Images" Ramon Moreno, Francesco Corona,et al., ELM 2012[[media:Presentacion-Soja-ELM.pdf | Slides]]<br />
<br />
*"Hybrid Extreme Rotation Forest" Borja Ayerdi and Manuel Grana, ELM 2012<br />
<br />
*"State-action value modeled by ELM in Reinforcement Learning for Hose Control Problems" Jose Manuel Lopez-Guede, Borja Fernandez-Gauna and Manuel Grana, ELM 2012<br />
<br />
*"Extreme Learning Machines for feature selection and classification of cocaine dependent patients on structural " Maite Termenon, Manuel Grana, Barros-Loscertales Alfonso and Cesar Avila, ELM 2012, dec 11-13, Sinagapore. [[media:Maite-Termenon-Presentacion-ELM-2012.pdf|slides]]<br />
<br />
*"Dynamic Tabu Search for Non Stationary Social Network identification based on Graph Coloring", Israel Rebollo and Manuel Graña. [http://soco.usal.es/ SOCO 2012] . OSTRAVA, CZECH REPUBLIC, September 5-7, 2012. Soft Computing Models in Industrial and Environmental Applications Advances in Intelligent Systems and Computing Volume 188, 2013, pp 495-503 [[media: israel_SOCO2012.pdf|Slides]]<br />
<br />
* Fast Segmentation of Abdominal Aortic Aneurysms for Endovascular Repair Planning and Follow-up, AUTHORS: Ivan Macia, Maria Arenas, Jon Haitz Legarreta, Isabelle Robin, Manuel Graña and Sabarinath Rajasekharan, MICCAI-STENT'12 <br />
* Extreme Learning Machine for Dimensionality Reduction and Classification on Hyperspectral Images. Ramón Moreno, Manuel Graña and Alicia D’Anjou. Proceedings of the 7th International Conference on Neural Networks and Artificial Intelligence, ICNNAI'2012, 2012, 231-234 <br />
* Hyperspectral Image Segmentation by t-Watershed and Hyperspherical Coordinates. Ramón Moreno and Alicia d'Anjou. Frontiers in Artificial Intelligence and Applications Volume 243, 2012 pp.2114 -2121 Advances in Knowledge-Based and Intelligent Information and Engineering Systems Edited by Manuel Graña et al. KES'12<br />
* "Image Security and Biometrics: A Review" [http://dx.doi.org/10.1007/978-3-642-28931-6_42 Doi]. Ion Marqués, Manuel Graña. HAIS 2012: Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: imarques-HAIS2012.pdf|Slides]]<br />
* "A Hybrid Segmentation of Abdominal CT Images" Josu Maiora, Manuel Graña. [http://http://hais.usal.es 7th International Conference on Hybrid Artificial Intelligence Systems]. Special session on Hybrid Computational Intelligence and Lattice Computing for Image and Signal Processing. Salamanca, Spain. March 28-30, 2012. [[Media:HAIS2012_Josu.pdf | slides]]<br />
* "A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]]. Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña. Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]] <br />
* "An empirical comparison of some approximate methods for Graph Coloring", Israel Rebollo and Manuel Graña, [http://http://hais.usal.es HAIS2012]. Salamanca, Spain. March 28-30, 2012.[[Media:israel_hais_slides.pdf|slides]] <br />
* "Abdominal CTA Image Analisys Through Active Learning and Decision Random Forests: Aplication to AAA Segmentation", Josu Maiora and Manuel Graña, IJCNN 2012, Brisbane, Australia<br />
* "Hybrid computational methods for hyperspectral image analysis." Miguel A. Veganzones, Manuel Graña. [http://http://hais.usal.es 7th International Conference on Hybrid Artificial Intelligence Systems]. Special session on Hybrid Computational Intelligence and Lattice Computing for Image and Signal Processing. Salamanca, Spain. March 28-30, 2012. [[Media:HAIS2012_-_veganzones.pdf | slides]]<br />
* "Cocaine Dependent Classification using Brain Magnetic Resonance Imaging". M. Termenon, M. Graña, A. Barrós-Loscertales, J. C. Bustamante, C. Ávila. [http://http://hais.usal.es 7th International Conference on Hybrid Artificial Intelligence Systems]. Special session on Hybrid Computational Intelligence and Lattice Computing for Image and Signal Processing. Salamanca, Spain. March 28-30, 2012. (Accepted) <br />
*''A Hybrid Gradient for n-Dimensional Images through Hyperspherical Coordinates'' [[Ramón Moreno Jiménez | Ramón Moreno]], Manuel Graña. HAIS 2012 , Hybrid Artificial Intelligent Systems Lecture Notes in Computer Science, 2012, Volume 7209/2012, 404-415, DOI: 10.1007/978-3-642-28931-6_39 Slides [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/277/HAIS12%20presentacion%20Ramon.pdf Slides]<br />
* ''ABOUT GRADIENT OPERATORS ON HYPERSPECTRAL IMAGES'' [[Ramón Moreno Jiménez | Ramón Moreno]], Manuel Graña. In Proceedings of the 1st International Conference on Pattern Recognition Applications and Methods, pages 433-437 DOI: 10.5220/0003863904330437 [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/277/ICPRAM-Presentacion-Ramon.pdf Slides]<br />
* "Dictionary based hyperspectral image retrieval." Miguel A. Veganzones, Mihai Datcu, Manuel Graña. [http://icpram.org 1st International Conference on Pattern Recognition Applications and Methods]. [http://icpram.org/PRARSHIA.asp Special session on Pattern Recognition Applications in Remotely Sensed Hyperspectral Image Analysis]. Algarve, Portugal. February 6-8, 2012. [[Media:icpram2012 - veganzones - slides.pdf | slides]]<br />
<br />
== 2011 ==<br />
* ''On Current Biomarkers for Alzheimer's Disease detected by Machine Learning techniques'' A. Savio, A. Bourisly, M. Graña [[media:Alexsavio_manuel_ismrm_final.pdf | PDF version]] [[media:Alexsavio_prezi_ismrm.zip | Prezi version]], ISMRM Workshop, Montabaur, Oct. 2011, [http://www.ismrm.org/workshops/Biomarkers11/]<br />
* ''Towards Relevant Dendritic Computing'' Manuel Graña, Ana I. Gonzalez-Acuña, NaBIC 2011 [http://nabic.ujn.edu.cn/nabic11/ NaBIC2011], [[media:Nabic-2011-grana-ana.pdf|slides]]<br />
* ''Further results of Gravitational Swarm Intelligence for Graph Coloring'' I. Rebollo, M. Graña, NaBIC 2011 [http://nabic.ujn.edu.cn/nabic11/ NaBIC2011], [[media:presentacion_NaBIC2011.pdf | Slides]].<br />
* ''Classification of patients after Endovascular Repair based on image registration quality measures'' Josu Maiora, Gillermo García, Manuel Graña, Mariano De Blas, Javier Sanchez. MICCAI-CVII 2011, Toronto, Canada, 18-22 Sept 2011 [http://vpa.sabanciuniv.edu/sites/cvii2011/] [http://www.miccai2011.org/][[media:Presentacion_MICCAI11_Josu.pdf | Slides]].<br />
*''Face recognition with Lattice Independent Component Analysis and Extreme Learning Machines '' Ion Marqués, Manuel Graña, [http://www.extreme-learning-machines.org/ELM2011 ELM'2011], Hangzhou, China [[media:presentation-ELM2012.pdf|slides]]<br />
*''Fuzzy Watershed for Image Segmentation ''Ramón Moreno, Manuel Graña, [http://cbrn-cbic2011.org/ CBIC'2011] <br />
*''Gravitational Swarm approach for Graph Coloring'' I. Rebollo, M. Graña, NICSO 2011 [http://www.nicso2011.org/ NICSO2011][[media:presentacion_NICSO2011.pdf | Slides]].<br />
* ''On the validation of a Spectral-Spatial CBIR system for hyperspectrtal images'' Miguel Angel Veganzones, Manuel Graña, WHISPERS 2011, Lisbon, June 7th. [[media:whispers2011-veganzones.pdf|slides]]<br />
* ''Topos 2: Spiking Neural Networks for bipedal walking in humanoid robots'' Pablo Gonzalez Nalda, Blanca Cases, HAIS 2011, Wroclaw 23-May-2011 [[media:PGonzlezNaldaHAIS2011slides.pdf|slides]]<br />
*'' Alzheimer Disease Classification on Diffusion Weighted Imaging features ''. Maite Termenon, Ariadna Besga, Jon Echeveste, Ana Gonzalez-Pinto and Manuel Graña. 4th. International Work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011. Jose Mira student best paper award in Bioinspired Application. [[media: TermenonPresentacionIWINAC.pdf| slides]]<br />
*'' High Resolution Segmentation of CSF on Phase Contrast MRI. ''. Elsa Fernández, Manuel Graña and Jorge Villanua. 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
*'' Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]] ''. Darya Chyzhyk, Ann K. Shinn, and Manuel Graña. 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011. [[media: Chyzhyk-IWINAC2011-Presentacion.pdf| slides]]<br />
*''A Knowledge-based Clinical Decision Support System for the diagnosis of Alzheimer Disease''. Eider Sanchez, Carlos Toro, Eduardo Carrasco, Patricia Bonachela, Carlos Parra, Gloria Bueno, Frank Guijarro. 13th IEEE International Conference on e-Health Networking, Application & Services (Healthcom 2011), Columbia, Missouri, USA. 13 June, 2011.<br />
*''An Architecture for the Semantic Enhancement of Clinical Decision Support Systems''. Eider Sanchez, Carlos Toro, Eduardo Carrasco, Gloria Bueno, Carlos Parra, Patricia Bonachela, Manuel Graña, Frank Guijarro. 15th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems (KES2011), Kaiserslautern, Germany. 12 September, 2011.<br />
* ''Experiments on Lattice Independent Components Analisys for Face Recognition.'' Ion Marqués, Manuel Graña. [http://www.iwinac.uned.es/iwinac2011/ 4th. International work-Conference on the Interplay between Natural and Artificial Computation (IWINAC 2011)], La Palma, Canary Islands, Spain. May 30 - June 3, 2011.[[media:Ion-presentationPoster-IWINAC11.pdf|slides]]<br />
* ''A novel data compression technique for remote sensing data mining.'' Avid Román-González, Miguel A. Veganzones, Manuel Graña, Mihai Datcu. [http://rssportal.esa.int/tiki-index.php?page=2011_ESA-EUSC-JRC ESA-EUSC-JRC 2011 - Image Information Mining: Geospatial Intelligence from Earth Observation]. JRC - Institute for the Protection and Security of the Citizen, Ispra - Varese (Italy). March 30 - April 1, 2011. [[Media:esa2011_roman-gonzalez_veganzones_poster.pdf | poster]]<br />
* ''Validation of remote sensing content-based information retrieval (RS-CBIR) systems upon scarce data.'' Miguel A. Veganzones, Manuel Graña. [http://rssportal.esa.int/tiki-index.php?page=2011_ESA-EUSC-JRC ESA-EUSC-JRC 2011 - Image Information Mining: Geospatial Intelligence from Earth Observation]. JRC - Institute for the Protection and Security of the Citizen, Ispra - Varese (Italy). March 30 - April 1, 2011. [[Media:esa2011_veganzones_grana_poster.pdf | poster]]<br />
* ''Validation of a Hyperspectral Content-Based Information Retrieval (RS-CBIR) System upon scarce data''. Miguel A. Veganzones, Manuel Graña. [http://soco.usal.es/ International Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011)], Salamanca, Spain. 6-8th April, 2011. [[media:Soco2011-veganzones.pdf|slides]]<br />
* ''Further results on Alzheimer Disease Detection on structural MRI features.'' Maite Termenon, Manuel Graña. [http://soco.usal.es/ International Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011)], Salamanca, Spain. 6-8th April, 2011. [[media:TermenonPresentacionSOCO.pdf|slides]]<br />
* ''Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI.'' Darya Chyzhyk, Manuel Graña. Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
* ''Wildland Fires’ Outlines Extraction a Spherical Coordinates Framed RGB Color Space Dichromatic Reflection Model Based Image Segmentation Approach'' Véronique Amarger, Dominik M. Ramík, Ramon Moreno, Lucile Rossi, Kurosh Madani, Manuel Graña. Minks, Belarus, 18-20 May 2011 [http://lsi.bas-net.by/conferences/prip2011/ PRIP'11] <br />
* ''Image Segmentation by Spherical Coordinates'' Ramón Moreno, Manuel Graña, Dominik M. Ramík, Kurosh Madani. Minks, Belarus, 18-20 May 2011 [http://lsi.bas-net.by/conferences/prip2011/ PRIP'11] [[media:PresentacionPRIP.pdf | Slides]]<br />
* ''A Hybrid Color Distance for Image Segmentation'' Ramón Moreno, Manuel Graña, Alicia d'Anjou. Wroclaw, Poland, 23-25 May 2011 [http://hais.pwr.wroc.pl/ HAIS'11] [[media:Presentacion_HAIS'11_Ramon.pdf | Slides]]<br />
* ''A geometrical method of diffuse and specular image components separation'' Ramón Moreno, Manuel Graña, Alicia d'Anjou. Torremolinos, Spain, 8-10 June 2011. [http://iwann.ugr.es/2011/iwann11.php?menu=news&sub=news IWANN'11] [[media:PresentacionIWANN2011Ramon.pdf | Slides]][[media:PosterIwann2011.pdf | Poster]]<br />
* ''Concurrent Modular Q-Learning with Local Rewards on Linked Multi-Component Robotic Systems'' Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña. [http://www.iwinac.uned.es/current/ IWINAC 2011], La Palma, Canary Islands, Spain. 30 May - 3 June, 2011. [[media:Borja.IWINAC2011.Slides.pdf|slides]]<br />
* ''Towards concurrent Q-Learning on Linked Multi-Component Robotic Systems'' Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña. Wroclaw, Poland, 23-25 May 2011 [http://hais.pwr.wroc.pl/ HAIS'11] [[media:Borja.HAIS2011.Slides.pdf| Slides]]<br />
* ''Empirical Study of Q-Learning Based Elemental Hose Transport Control'' Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta. HAIS 2011, Wroclaw, Poland, 23-25 May 2011 [http://hais.pwr.wroc.pl/ HAIS'11] [[media:slides_HAIS11-LMCRS-QLearning-JM.pdf| Slides]]<br />
* ''Deformation based features for Alzheimer's disease detection with linear SVM.'' Alexandre Savio, Manuel Graña, Jorge Villanúa. [http://hais.pwr.wroc.pl/ Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011)] - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br />
* ''A hybrid system for survival analysis after EVAR treatment of AAA'' Josu Maiora, Manuel Graña.Wroclaw, Poland, 23-25 May 2011 [http://hais.pwr.wroc.pl/ HAIS'11] [[media:Presentacion_HAIS'11_Josu.pdf | Slides]]<br />
<br />
==2010==<br />
<br />
*Face Processing for Security: a Short Review , Ion Marques and Manuel Graña ,CISIS'10, Leon, Spain [[media:CISIS10-IonMarques-2010-07-25.pdf|pdf]], [[media:presentation-CISIS10.pdf|slides]]<br />
<br />
*[[media:Welcome-address-HAIS-2010.pdf|welcome address HAIS 2010]]<br />
<br />
*REGRESSION TECHNIQUES AND NEURAL NETWORKS FOR ESTIMATING LAI FROM REMOTE SENSING DATA – AN APPLICATION CASE USING FOREST-BGC, Leónia NUNES, Carmen HERNANDEZ, Miguel VEGANZONES, Margarida L. R. LIBERATO, Manuel GRAÑA and Domingos LOPES [http://forestsat2010.usc.es/es/index.html ForestSat 2010] Lugo, Spain, September, 2010, [[media:Abstract ForestSat 2010 L Nunes.pdf|draft]]<br />
<br />
* LAI estimation combining field data and remote sensing: A case study in a forest area of northern Portugal, Carmen Hernández, Leonia Nunes, Miguel Angel Veganzones, Manuel Graña, Domingos Lopes, [http://www.forestchange2010.utad.pt/ Mixed and Pure Forests in a changing word], Vila Real, Portugal, Octubre 2010,<br />
<br />
*Thrombus Volume Change Visualization after Endovascular Abdominal Aortic Aneurysm Repair, Josu Maiora, Guillermo García, Iván Macía, Jon Haitz Legarreta, Fernando Boto, Céline Paloc, Manuel Graña and Javier Sanchez Abuín, HAIS 2010, San Sebastian<br />
* Hybrid Decision Support System for Endovascular Aortic Aneurysm Repair Follow-up, Jon Haitz Legarreta, Fernando Boto, Iván Macía, Josu Maiora, Guillermo García, Céline Paloc, Manuel Graña and Mariano de Blas, HAIS 2010, San Sebastian<br />
*A Comparison of VBM results by SPM, ICA and LICA, Darya Chyzhyk, Maite Termenón, Alexandre Savio , HAIS 2010, San Sebastián, Spain<br />
* On the use of a hybrid approach to contrast Endemember Induction Algorithms. Miguel A. Veganzones, Carmen Hernández. HAIS 2010, San Sebastián, Spain. [[Media:HAIS2010_veganzones.pdf | slides]]<br />
* Hybrid Color Space Transformation to Visualize Color Constancy. Ramón Moreno, Jose Manuel Lopez-Guede, Alicia d'Anjou . HAIS 2010, 23-25 junio, San Sebastián, Spain [[media:Hais2010Ramon.pdf|draft]] [[media:Presentacion-HAIS10-ramon-moreno.pdf|slides]]<br />
* A image color Gradient Preserving Color constancy. Ramón Moreno, Manuel Graña, Alicia d'Anjou . FUZZ-IEEE 2010, IEEE catalog Number: CFP10FUZ-DVD pp.710-714 ISBN 978-1-4244-6920-8 [[media:Wcci-2010-ramon-final.pdf|draft]]<br />
* A color transformation for robust detection of color landmarks in robotic contexts, Ramón Moreno, Manuel Graña, Alicia d'Anjou. SMC Workshop IEEE Spanish Chapter PAAMS 2010. Salamanca, Spain [[media:PaamsRamon.pdf|draft]] [[media:PaamsRamonSlides.pdf|Slides]]<br />
* Percolating Swarm Dynamics, Manuel Graña, Carmen Hernández, Alicia D’Anjou, and Blanca Cases, IEA/AIE 2010, Córdoba, Spain, Junio 2010 [[media:Percolating-swarm-dynamics-cordoba-2010.pdf|pdf draft]] [[media:Percolation-cordoba-presentacion.pdf|slides]] [http://www.youtube.com/watch?v=PKN-n9XuU3k]<br />
<br />
*Thrombus change detection after endovascular abdominal aortic aneurysm repair, J. Maiora, G. Garcia, M. Grana, I. Macia, J.H. Legarreta, C. Paloc, M. De Blas, CARS 2010 Computer Assisted Radiology and Surgery June 23 - 26, 2010, Geneva, Switzerland Joint Congress of CAR / ISCAS / CMI / CAD / EuroPACS<br />
* Further results on swarms solving Graph Coloring, Manuel Graña, Blanca Cases, Carmen Hernandez, and Alicia D’Anjou, ICCSA 2010, Japon, [[media:Iccsa-2010-flocks-cgp.pdf|slides]]<br />
* An stable skeletonization for tabletop gesture recognition, Andoni Beristain, Manuel Graña, ICCSA 2010, Japón [[media:ICCSA-2010-andoni-slides.pdf|slides]]<br />
*A color transformation for robust detection of color landmarks in robotic contexts, Ramon Moreno, Manuel Graña, Alicia d'Anjou, PAAMS 2010, workshop IEEE SMC spanish chapter [[media:SF2-ingles.pdf|draft]]<br />
*A Computer-Aided Decision Support system for Shoulder Pain Pathology, K. López de Ipiña, M. Hernández, M. Graña, E. Martínez, C. Vaquero, PAAMS 2010<br />
*Experiments on Robotic Multi-Agent System for Hose Deployment and Transportation Ivan Villaverde, Zelmar Echegoyen, Ramón Moreno, and Manuel Graña, PAMMS 2010 [[media:IVillaverdePAAMS2010draft.pdf|draft]]<br />
*Interactive Multimedia Tabletops (IMT) for Casual Users, Andoni Beristain, Manuel Graña, PAAMS 2010, workshop IEEE SMC spanish chapter<br />
*Energy cost reduction in the synchronization of a pair of nonidentical coupled Hindmarsh-Rose neurons , Abdelmalik Moujahid, Alicia d'Anjou, F.Javier Torrealdea, Cecilia Sarasola, PAAMS 2010, workshop IEEE SMC spanish chapt<br />
*Energetic considerations on the dynamics of Hodgkin-Huxley neurons , Abdelmalik Moujahid, Alicia d'Anjou, F. Torrealdea, F.Javier Torrealdea, ICNC’10 and FSKD’10 International Conference Proceedings in (ICNC’10 IEEE Catalog Number: CFP10CNC-PRT, ISBN: 978-1-4244-5960-5;FSKD’10 IEEE Catalog Number: CFP10FSK-PRT, ISBN: 978-1-4244-5932-2), 2010<br />
*Linked Multicomponent Robotic Systems: Basic Assessment of Linking Element Dynamical Effect , Borja Fdez. Gauna, Jose M. Lopez-Guede, Ekaitz Zulueta, HAIS 2010, San Sebastian [[media:2010.HAIS.Borja.JMGuede.Ekaitz.pdf|pdf]] [[media:2010.HAIS.Borja.JMGuede.Ekaitz.Aurkezpena.pdf|slides]]<br />
<br />
==2009==<br />
<br />
* CiraÇao de uma interface amigavel para Forest-BGC. Miguel Angel Veganzones. Communication on the workshop "Pensar (e investigar) os povamentos mistos em Portugal" in Oeiras (Portugal) no ambito do PTDC/AGR-CFL/68186/2006. September 25th, 2009.<br />
* Segmentation of Abdominal Aortic Aneurysms in CT Images using a Radial Model Approach, [[media:IMacia IDEAL2009 FINAL.pdf|slides]] Iván Macía Oliver, Jon Haitz Legarreta, Céline Paloc, Manuel Graña, Josu Maiora, Guillermo García, IDEAL 2009, 24 sept. 2009, Burgos<br />
* Stent Graft Change Detection after Endovascular Abdominal Aortic Aneurysm Repair. [[media:Ideal-2009 Josu-slides.pdf|slides]] Josu Maiora, Guillermo García, Arantxa Tapia, Ivan Macía, Jon Haitz Legarreta, Manuel, Graña, IDEAL 2009, 24 sept. 2009, Burgos<br />
* An automatic segmentation and reconstruction of mandibular structures from CT-data , Iñigo Barandiaran, Iván Macía, Eva Berckmann, Diana Wald, Michael Pierre Dupillier, Celine Paloc, and Manuel Graña, IDEAL 2009, 24 sept. 2009, Burgos<br />
* Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection [[media:Presentation GarciaSebastianSavio-VBM SPM SVM-IDEAL-2009.pdf | slides]], Alexandre, Manhaes Savio, Maite, García-Sebastián, Carmen, Hernández, Manuel, Graña, Jorge, Villanúa, IDEAL 2009, 24 sept. 2009, Burgos<br />
* Watermarking Authentication Based on the Orthogonality of Pseudo-Random Binary Sequences, Manuel Grana, IPCV'09 inside WORLDCOMP'09, Las Vegas, 16 july 2009 [[media:Presentation-graña.pdf|slides]]<br />
* Domain modeling based on Engineering Standards, Carlos Toro, Manuel Graña, Jorge Posada, Javier Vaquero, Cesar Sanín, Edward Szczerbicki, KES 2009, Santiago de Chile<br />
* Bayesian Reflectance Component Separation, Ramón Moreno, Manuel Graña, Alicia d'Anjou, Carmen Hernandez, KES 2009<br />
* Ivan Villaverde, Manuel Graña, An Improved Evolutionary Approach for Egomotion Estimation with a 3D TOF Camera, IWINAC 2009, Santiago de Compostela, June 2009<br />
* Manuel Graña, Zelmar Echegoyen, Alicia d'Anjou, On the control of a multi-robot system for the manipulation of an elastic hose, IWINAC 2009, Santiago de Compostela, June 2009<br />
* Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa, Results of an Adaboost approach on Alzheimer's Disease detection on MRI, Methods and Models in Artificial and Natural Computation, IWINAC 2009, ISBN 3-642-02266-9, p. 114-123, Santiago de Compostela, June 2009<br />
* Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa, On the use of Morphometry based features for Alzheimer's Disease detection on MRI, IWANN2009, Salamanca, June 2009<br />
* Manuel Graña, Iván Villaverde, Jose Manuel López Guede, Borja Fernández, Review of Hybridizations of Kalman Filters with Fuzzy and Neural Computing for Mobile Robot Navigation, HAIS09, Salamanca, June 2009<br />
* Miguel Angel Veganzones. Comunicación en la segunda reunión de la Red Temática en Codificación y Transmisión de Contenidos Multimedia en Barcelona, 27 febrero 2009. https://gici.uab.es/wiki_red_tematica.<br />
<br />
== 2008 ==<br />
<br />
*Ivan Villaverde, Zelmar Echegoyen, and Manuel Grana, Neuro-Evolutive system for ego-motion estimation with a 3D camera, [[Media:Ivan-iconip2008-slides.pdf|slides]] ICONIP 2008, [http://www.aut.ac.nz/iconip08/] Auckland, New Zealand, Nov. 25-28, 2008<br />
<br />
*Zelmar Echegoyen, Alicia d'Anjou, and Manuel Grana, Towards the adaptive control of a multirobot system for an elastic hose, [[Media:Iconip2008-zelmar-slides.pdf|slides]] ICONIP 2008, [http://www.aut.ac.nz/iconip08/] Auckland, New Zealand, Nov. 25-28, 2008<br />
<br />
* Jose Manuel Lopez-Guede, Manuel Graña, Ekaitz Zulueta, and Oscar Barambones, Economical Implementation of Control Loops for Multi-Robot Systems, [[Media:Jose-manuel-Presentacion ICONIP 08.pdf|slides]] ICONIP 2008, [http://www.aut.ac.nz/iconip08/] Auckland, New Zealand, Nov. 25-28, 2008<br />
<br />
* Ivan Villaverde and Manuel Graña, A Hybrid Intelligent System for Robot Ego Motion Estimation with a 3D Camera. Third International Workshop, HAIS 2008, Burgos, Spain, September 24-26, 2008<br />
<br />
* Ramón Moreno, Alicia d’Anjou and Manuel Graña, Evolutive Parametric Approach for Specular Correction in the Dichromatic Reflection Model, Third International Workshop, HAIS 2008, Burgos, Spain, September 24-26, 2008, <br />
<br />
* José Manuel López-Guede, Manuel Graña and Ekaitz Zulueta, On Distributed Cooperative Control for the Manipulation of a Hose by a Multirobot System, Third International Workshop, HAIS 2008, Burgos, Spain, September 24-26, 2008, <br />
<br />
* R.J. Duro, M. Graña and J. de Lope, On the need of Hybrid Intelligent Systems in Modular and Multi Robotics, Third International Workshop, HAIS 2008, Burgos, Spain, September 24-26, 2008, <br />
<br />
* "Endmember extraction methods: a short review"; Miguel Angel Veganzones, Manuel Graña; Communication on the "12th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems - KES 2008" invited session on "Hyperspectral Imagery for Remote Sensing: Intelligent Analysis and Applications" in Zagreb (Croatia). September 3-5th, 2008. [http://kes2008.kesinternational.org/]. [[media:Kes-veganzones-2008.pdf|draft]] <br />
<br />
* ''An approach from Lattice Computing to fMRI analysis'' [[Media:Slides-CLA-LBM-2008-grana.pdf | slides pdf]] Manuel Graña, Maite García-Sebastián, Ivan Villaverde, Elsa Fernandez, LBM 2008 (workshop dell CLA 2008), Omouluc, Chequia, 21-23 Octubre 2008 [[Media:Proceedings-cla2008-workshop.pdf|pdf-proceedings]]<br />
<br />
* "Diferencias de género en una tarea acuática virtual de Morris: el papelde cerca-lejos" (Gender differences in a virtual Morris water task: the role of near-far), A.A. Artigas, J. Sansa, F. Banterla, M. Graña y V.D. Chamizo. SEPC 2008, BIlbao<br />
<br />
* Blanca Cases, Carmen Hernandez, Manuel Graña, Alicia D’Anjou [[Media:Alife-2008-B.cases.pdf | On the ability of Swarms to compute the 3-coloring of graphs]], ALIFE 2008, Whinchester, UK, August 2008<br />
<br />
* Ramón Moreno, Manuel Graña and Alicia d'Anjou. ''Evolutive Parametric Approach for Specular Correction in the Dichromatic Reflection Model''Hybrid Artificial Intelligence Systems (HAIS'08). accepted<br />
<br />
* Ivan Villaverde and Manuel Graña. ''A Hybrid Intelligent System for Robot Ego-Motion Estimation with a 3D Camera''. The 3rd International Workshop on Hybrid Artificial Intelligence Systems (HAIS'08). accepted<br />
<br />
* A ROBUST INTELLIGENT SYSTEM FOR INTERACTING WITH PEOPLE WITH COGNICTIVE DISABILITIES E. Irigoyen, K. L. de Ipiña, N. Garay, I. Fajardo, A. Goicoechea, A. Ezeiza, M. Peñagarikano, G. Bordel, A. Conde, M. Larrañaga, A. Arruti, L.J. Rodríguez, J.M. López, E. Zulueta1, M. Graña, J. Rubio INTED2008. International Technology, Education and Development Conference L. Gómez Chova, D. Martí Belenguer, I. Candel Torres (eds) ISBN: 978-84-612-0190-7<br />
<br />
* M. Graña. ''A Brief Review of Lattice Computing'' WCCI 2008, Hong-Kong, 1-6 Junio 2008<br />
<br />
* Maite García-Sebastián, A. M. Savio, M. Graña. ''Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm'' WCCI 2008 Hong-Kong, 1-6 Junio 2008<br />
<br />
* M. Graña: Lattice Computing: Lattice Theory based Computational Intelligence , [[Media:Lattice-computing-CI.pdf|pdf]] MTE 2008, 15-18 Febrero 2008, Ibaraki National College of Technology, Hitachinaka, Ibaraki, Japan [http://www.ibaraki-ct.ac.jp/ge/MTE2008/Home_Page/home.html] MTE 2008 Proceedings, T. Matsuhisa, H. Koibuchi (eds), Dept. natural Sciences, Irabaki National College of Technology, pp.:19-27<br />
<br />
* "Hyperspectral Imaging: virtual dimensionality, linear unmixing and endmembers induction methods"; Miguel A. Veganzones; Communication on the "2nd Workshop on Computational Intelligence - JIC'08" in Verona (Italy). May 13-16th, 2008. http://www.ehu.es/computationalintelligence/index.php/Jic08.<br />
<br />
* Barandiaran,I.; Cottez,Ch., Paloc,C., Graña,M.: "Random Forest Classifiers for Real-Time Optical Markerless Tracking" In Proc. of 3rd Int. Conf. on Computer Vision Theory and Applications VISAPP 2008, Funchal, Madeira. Vol 2, pp. 559-561.<br />
<br />
* Barandiaran,I.; Cottez,Ch., Paloc,C., Graña,M.: "Comparative Evaluation of Random Forest and Ferns Classifiers for Real-Time Feature Matching" WSCG 2008 University of West Bohemia, Campus Bory, Plzen (Pilsen), Czech Republic February 4 - 7, 2008<br />
<br />
* Moujahid,A.; D'Anjou,A., Torrealdea,F.J.., Sarasola,C.: "Energy and correlation analysis of identical coupled chaotic systems" In Proc. of the Workshop Net-Works 2008, Pamplona (accepted).</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18151
Usuario:Daria.chizhik
2015-09-23T11:00:18Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine, Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. Ferrández Vicente, J.M., Álvarez-Sánchez, J.R., de la Paz López, F., Toledo-Moreo, F.J., Adeli, H. (Eds.), ISBN 978-3-319-18914-7. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease [[media: 00450034.pdf|pdf]]<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Cap%C3%AD%C2%ADtulos_de_Libro&diff=18149
Capítulos de Libro
2015-09-23T11:00:12Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>== 2015 ==<br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine, Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. Ferrández Vicente, J.M., Álvarez-Sánchez, J.R., de la Paz López, F., Toledo-Moreo, F.J., Adeli, H. (Eds.), ISBN 978-3-319-18914-7. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease [[media: 00450034.pdf|pdf]]<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
; Manuel Graña, J. David Nuñez-Gonzalez<br />
: "An instance of social intelligence in the internet of things: bread making recipe recommendation by ELM Regression" <br />
: E. Onieva et al. (Eds.): HAIS 2015, LNAI 9121, pp. 1–10, 2015. Springer International Publishing Switzerland 2015<br />
: DOI: 10.1007/978-3-319-19644-2 2<br />
<br />
;Manuel Graña and Ion Marques<br />
:Experiments of Skin Detection in Hyperspectral Images<br />
:J.M. Ferrández Vicente et al. (Eds.): IWINAC 2015, Part II, LNCS 9108, pp. 184–192, 2015. <br />
: Springer Verla<br />
:DOI: 10.1007/978-3-319-18833-1_20<br />
<br />
;Aitor Moreno-Fernandez-de-Leceta, Unai Arenal Go ́mez, Jose Manuel Lopez-Guede, and Manuel Graña<br />
:Real Implantation of an Expert System for Elderly Home Care<br />
: 2015 E. Onieva et al. (Eds.): HAIS 2015, LNAI 9121, pp. 1–11, 2015. Springer International Publishing Switzerland<br />
: DOI: 10.1007/978-3-319-19644-2 55<br />
<br />
;Ion Marqués, Manuel Graña, Stephanie M. Sanchez, Mohammed Q. Alkhatib, Miguel Velez-Reyes<br />
:Person detection in hyperspectral images via skin segmentation using an active learning approach<br />
:Proc. SPIE 9472, Algorithms and Technologies for Multispectral, Hyperspectral, and Ultraspectral Imagery XXI, 947207 (May 21, 2015); <br />
: doi: 10.1117/12.2179333<br />
<br />
==2014==<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
;Ion Marques, Manuel Graña, <br />
:"Hybrid Sparse Linear and Lattice Method for Hyperspectral Image Unmixing", en Polycarpou, Marios et al. (eds) Hybrid Artificial Intelligence Systems, LNCS 8480, pp. 266-273<br />
:http://dx.doi.org/10.1007/978-3-319-07617-1_24<br />
<br />
;Borja Ayerdi, Manuel Graña <br />
: Hyperspectral Image Nonlinear Unmixing by Ensemble ELM Regression" en Cao, Jiuwen et al. (eds) Proceedings of ELM-2014 Volume 2, pp.289-297 Proceedings in Adaptation, Learning and Optimization, 4, Springer<br />
: dx.doi.org/10.1007/978-3-319-14066-7_28<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Borja Fernandez-Gauna, Juan Luis Osa, Manuel Graña<br />
: Effect of Initial Conditioning of Reinforcement Learning Agents on Feedback Control Tasks over Continuous State and Action Spaces<br />
: International Joint Conference SOCO'14-CISIS'14-ICEUTE'14, pp. 125-134 ISBN 978-3-319-07994-3<br />
<br />
; J. David Nuñez-Gonzalez, Manuel Graña <br />
: "Experiments on Trust Prediction based on reputation features" <br />
: International Joint Conference SOCO’14-CISIS’14-ICEUTE’14 Advances in Intelligent Systems and Computing Volume 299, 2014, pp 367-37 <br />
<br />
; J. David Nuñez-Gonzalez, Manuel Graña <br />
: "On the effect of high order reputation information on Trust Prediction in Wikipedia’s Vote Network" <br />
: European Network Intelligence Conference 2014<br />
<br />
==2013==<br />
<br />
<br />
<br />
;Borja Fernandez-Gauna, Igor Ansoategui, Ismael Etxeberria-Agiriano, Manuel Graña<br />
:Empirical Study of the Sensitivity of CACLA to Sub-optimal Parameter Setting in Learning Feedback Controllers<br />
:International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, Advances in Intelligent Systems and Computing Volume 239, 2014, pp 101-108, Springer<br />
: DOI 10.1007/978-3-319-01854-6_11<br />
<br />
;Jose Manuel López-Guede, Jose Antonio Ramos-Hernanz, Manuel Graña <br />
: Artificial Neural Network Modeling of a Photovoltaic Module<br />
: International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, Advances in Intelligent Systems and Computing Volume 239, 2014, pp 389-397<br />
: DOI 10.1007/978-3-319-01854-6_40<br />
: ISBN 978-3-319-01853-9<br />
<br />
<br />
;Grana, M. ; Rebollo, I. <br />
: Instances of subconscious social intelligent computing<br />
: Computational Aspects of Social Networks (CASoN), 2013 Fifth International Conference on, 2013 , Page(s): 74 - 78<br />
: Digital Object Identifier: 10.1109/CASoN.2013.6622604 <br />
<br />
;Grana, M. ; Rebollo, I. <br />
:Convergence results on the stable states of a Gravitational Swarm solving the Graph Coloring Problem<br />
:Nature and Biologically Inspired Computing (NaBIC), 2013 World Congress on <br />
:Digital Object Identifier: 10.1109/NaBIC.2013.6617846 <br />
:Publication Year: 2013 , Page(s): 107 - 112<br />
<br />
<br />
;M. Graña<br />
:Subconscious Social Computational Intelligence<br />
:Computational Intelligence, Cyber Security and Computational Models, Proceedings of ICC3, 2013 G. Sai Sundara Krishnan, R. Anitha, R. S. Lekshmi, M. Senthil Kumar, Anthony Bonato and Manuel Graña (eds) Advances in Intelligent Systems and Computing 246, Springer India 2014, Pages 15-21<br />
: ISBN: 978-81-322-1679-7 (Print) 978-81-322-1680-3 (Online)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
;J. David Nuñez-Gonzalez, Manuel Graña <br />
<br />
:"Predicting Trust From Reputation in a Social Network of Reviewers by ELM" <br />
:Fuchen Sun, Kar-Ann Toh, Manuel Grana Romay, Kezhi Mao (Eds.): Adaptation, Learning and Optimization: Extreme Learning Machines 2013: Algorithms and Applications Volume 16 2014, <br />
:pp. 179—188 Springer (2014) ISSN 1867-4534 ISSN 1867-4542 (electronic) <br />
:ISBN 978-3-319-04740-9 ISBN 978-3-319-04741-6 (eBook) DOI 10.1007/978-3-319-04741-6 Springer Cham Heidelberg New York Dordrecht London <br />
<br />
;Manuel Graña, Ion Marqués, Alexandre Savio, Bruno Apolloni,<br />
:A domestic application of Intelligent Social Computing: the SandS project <br />
: International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, A Herero et al. (eds) pp 221-228<br />
: Springer Verlag, Advances in Intelligent Systems and Computing, 239<br />
: ISBN 978-3-319-01853-9<br />
: DOI 10.1007/978-3-319-01854-6_23<br />
<br />
; Manuel Graña, J. David Nuñez-Gonzalez, Bruno Apolloni<br />
: A discussion on trust requirements for a social network of eahoukers [http://link.springer.com/chapter/10.1007/978-3-642-40846-5_54]<br />
: J.-S. Pan et al. (Eds.): Hybrid Artificial Intelligent Systems HAIS 2013 Proceedings, LNAI 8073, pp. 540--547. Springer, Heidelberg (2013)<br />
:ISBN: 978-3-642-40845-8 (Print) 978-3-642-40846-5 (Online)<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features<br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743 DOI 10.1007/978-3-642-40846-5_48<br />
<br />
; M. Termenon, M. Graña, A. Besga, J. Echeveste, J. M. Pérez and A. M. Gonzalez-Pinto<br />
: Diagnosis of Bipolar Disorder based on Principal Component Analysis and Support Vector Machines over the MRI deformation Jacobian<br />
: Proceedings of the 8th International Conference on Computer Recognition Systems CORES 2013<br />
: Advances in Intelligent Systems and Computing Volume 226, 2013, pp 569-578<br />
: Print ISBN: 978-3-319-00968-1, Online ISBN: 978-3-319-00969-8<br />
: ISSN 2194-5357<br />
<br />
;M. Graña, B. Apolloni, M. Fiasché, G. Galliani, C. Zizzo, G. Caridakis, G. Siolas, S. Kollias, F. Barriento, S. San Jose<br />
: Social and Smart: towards an instance of subconscious social intelligence [http://link.springer.com/chapter/10.1007/978-3-642-41016-1_32]<br />
: Proceedings IPMSC 2013 [http://delab.csd.auth.gr/eann2013/workshops.php?workshop_id=3]<br />
: L. Iliadis, H. Papadopoulos, and C. Jayne (Eds.): EANN 2013, Part II, CCIS 384, pp. 302–311, 2013<br />
: Springer<br />
: ISBN: 978-3-642-41015-4 (Print) 978-3-642-41016-1 (Online)<br />
<br />
;Israel Rebollo, Manuel Graña<br />
: User assistance tool for a WebService ERP [http://link.springer.com/chapter/10.1007/978-3-319-00563-8_24]<br />
: Trends in Practical Applications of Agents and Multiagent Systems, Javier Bajo Perez et al. (eds.), Advances in Intelligent Systems and Computing Volume 221, 2013, pp 193-200<br />
: Springer <br />
: SBN: 978-3-319-00562-1 (Print) 978-3-319-00563-8 (Online)<br />
<br />
;Borja Fernandez-Gauna, Igor Ansoategui, Ismael Etxeberria-Agiriano, and Manuel Graña<br />
:An Empirical Study of Actor-Critic Methods for Feedback Controllers of Ball-Screw Drivers<br />
:J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 441--450. Springer, Heidelberg (2013)<br />
: ISBN<br />
<br />
; Ion Marques and Manuel Graña<br />
:Greedy Sparsification WM Algorithm for Endmember Induction in Hyperspectral Images<br />
:J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 336--344. Springer, Heidelberg (2013)<br />
: ISBN<br />
<br />
; Jose Manuel Lopez-Guede, Manuel Graña, Jose Antonio Ramos-Hernanz, and Fernando Oterino<br />
:A Neural Network Approximation of L-MCRS Dynamics for Reinforcement Learning Experiments<br />
:J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 317--325. Springer, Heidelberg (2013)<br />
: ISBN<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
:J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
:J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
;Borja Ayerdi, Alexandre Savio, and Manuel Graña<br />
:Meta-ensembles of Classifiers for Alzheimer's Disease Detection Using Independent ROI Features<br />
:J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122--130. Springer, Heidelberg (2013)<br />
: ISBN<br />
<br />
; B. Apolloni, M. Fiasche, G. Galliani, C. Zizzo, G. Caridakis, G. Siola, S. Kollia, M. Grana Romay, F. Barriento, S. San Jose<br />
:Social Things - The SandS instantiation<br />
: IoT-SoS 2013<br />
: ISBN<br />
<br />
; Alexandre Savio, Manuel Graña<br />
: ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br />
: IWANN 2013, Part II, LNCS 7903, pp. 107--114. Springer, Heidelberg (2013)<br />
: Eds.: I. Rojas, G. Joya, and J. Cabestany<br />
: [[media:Iwann13_oasis_aal_draft.pdf|draft]]<br />
<br />
; Ramon Moreno, Manuel Graña and Kurosh Madani<br />
: ''A robust color Watershed transformation and image segmentation defined on RGB Spherical Coordinates''<br />
: Robotic Vision: Technologies for Machine Learning and Vision Applications, pp112-128 <br />
: doi:10.4018/978-1-4666-2672-0.ch007 ISBN: 978-1-4666-2734-5<br />
<br />
; J.M. Lopez-Guede, B. Fernandez-Gauna, R. Moreno and M. Graña,<br />
: ''Visual Detection in Linked Multi-Component Robotic Systems''<br />
: Robotic Vision: Technologies for Machine Learning and Vision Applications. pp78-97<br />
: doi:10.4018/978-1-4666-2672-0.ch007 ISBN: 978-1-4666-2734-5<br />
<br />
==2012==<br />
<br />
; MA Veganzones, M Graña<br />
:Lattice auto-associative memories induced supervised ordering defining a multivariate morphology on hyperspectral data<br />
: Hyperspectral Image and Signal Processing (WHISPERS), 2012 4th Workshop on, pp. 1-4<br />
: DOI 10.1109/WHISPERS.2012.6874333<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
;Miguel A. Veganzones, Mihai Datcu, Manuel Graña.<br />
: "Relevance feedback by dissimilarity spaces for hyperspectral CBIR." <br />
: [http://bookshop.europa.eu/is-bin/INTERSHOP.enfinity/WFS/EU-Bookshop-Site/en_GB/-/EUR/ViewPublication-Start?PublicationKey=LBNA25514 Proceedings of the ESA-EUSC-JRC 8th conference on image information mining, Knowledge discovery from earth observation data]. Edited by P. Soille, M. Iapaolo, P.G. Marchetti, and M. Datcu. European Comission. Pages: 1-5. 2012.<br />
: ISBN: 978-92-79-26419-1 ISSN: 1831-9424 DOI: 10.2788/49465<br />
<br />
;V. Amarger, D. M. Ramík, C. Sabourin, K. Madani, R. Moreno, L. Rossi, M. Graña, <br />
:"Spherical Coordinates Framed RGB Color Space Dichromatic Reflection Model Based Image Segmentation: Application to Wildland Fires’ Outlines Extraction", <br />
:Proceedings of International conference on Image Processing Theory, Tools and Applications (IEEE-IPTA 2012), Istanbul, Turkey, October 15 - 18, pp. 19-24, 2012. [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/275/IPTA-2012-Paper-299-Final-PDF.pdf]<br />
:ISBN: 978-1-4673-2582-0<br />
<br />
; Israel Rebollo and Manuel Graña<br />
: Dynamic Tabu Search for Non Stationary Social Network identification based on Graph Coloring<br />
: [http://www.springer.com/engineering/computational+intelligence+and+complexity/book/978-3-642-32921-0 Advances in Intelligent Systems and Computing][[media: israel_SOCO2012.pdf|Slides]]<br />
: Soft Computing Models in Industrial and Enviromental Applications, Vol. 188, pages 495 - 503, 2012.<br />
: Eds: Václav Snásel, Ajith Abraham and Emilio S. Corchado.<br />
: ISBN: 978-3-642-32921-0<br />
<br />
; Alexandre Savio<br />
: Supervised classification using deformation-based features for Alzheimer’s disease detection on the OASIS cross-sectional database <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Eider Sanchez, Carlos Toro, Arkaitz Artetxe, Manuel Graña, Eduardo Carrasco, Frank Guijarro<br />
: A Semantic Clinical Decision Support System: conceptual architecture and implementation guidelines<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1390 - 1399, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; G. García, J. Maiora, A. Tapia, M. De Blas<br />
: Computer-aided Diagnosis of Abdominal Aortic Aneurysm after Endovascular Repair Using Texture Analysis<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 716-725, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Iñigo Barandiaran, John Congote, Jon Goenetxea, Oscar Ruiz<br />
: Evaluation of interest point detectors for image information extraction<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2170 - 2179, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Ramón Moreno, Alicia d'Anjou<br />
: Hyperspectral Image Segmentation by t-Watershed and Hyperspherical Coordinates<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2114 - 2121, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Ekaitz Zulueta<br />
: Towards a real time simulation of Linked Multi-Component Robotic Systems<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2019 - 2027, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Iñigo Barandiaran, Grégory Maclair, Izaro Goienetxea, Carlos Jauquicoa, Manuel Graña<br />
: A Comparative Study of Classifier Ensembles for Karyotyping<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1400 - 1407, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; M. Termenon, E. Fernández, A. Barrós-Loscertales, J.C. Bustamante, C. Ávila<br />
: Impact of Analysis Circularity: a Case Study in Cocaine Addiction detection on MRI<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2201 - 2209, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Arkaitz Artetxe, Eider Sanchez, Carlos Toro, Cesar Sanin, Edward Szczerbicki, Manuel Graña, Jorge Posada<br />
: Speed-up of a Knowledge-Based Clinical Diagnosis System using Reflexive Ontologies <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1480 - 1489, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Adrian Agreda<br />
: Trust in communication and multiagent systems <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 816 - 822, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Miguel A. Veganzones<br />
: On hyperspectral morphology by lattice auto-associative memories supervised orderings<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2122-2129, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. <br />
<br />
; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Ramon Moreno, Manuel Graña<br />
: "Visual Detection in Linked Multi-Component Robotic Systems"<br />
: Published in: "Robotic Vision: Technologies for Machine Learning and Vision Applications"<br />
: Eds: Miguel Cazorla and Jose Garcia. IGI Global. <br />
: ISBN:<br />
<br />
; M. Termenon, M. Graña, A. Barrós-Loscertales, J. C. Bustamante, C. Ávila.<br />
: "Cocaine Dependent Classification using Brain Magnetic Resonance Imaging" [http://www.springerlink.com/content/k54353335gx22208/]<br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAISTermenon2012_Presentacion.pdf|Slides]]<br />
: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 448-454, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Ion Marqués and Manuel Graña<br />
: "Image Security and Biometrics: A Review" [http://dx.doi.org/10.1007/978-3-642-28931-6_42 Doi] [[media:Hais survey 03-11-2011.pdf|draft]]<br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012.[[media: imarques-HAIS2012.pdf|Slides]]<br />
: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 436-447, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Miguel A. Veganzones and Manuel Graña<br />
: "Hybrid computational methods for hyperspectral image analysis."<br />
: [http://www.springer.com/computer/ai/book/978-3-642-28930-9 HAIS 2012, Part II, LNCS 7209], pp. 424-435. 2012.<br />
<br />
; Israel Rebollo, Manuel Graña<br />
: "An empirical comparison of some approximate methods for Graph Coloring" [[media: hais_israel.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012), Salamanca, Spain. March 28-30, 2012. <br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part I, pp. 600-609, 2012. LNCS 7208 <br />
: DOI: 10.1007/978-3-642-28942-2_54<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: Series: Lecture Notes in Computer Science, Vol. 7209<br />
: Subseries: Lecture Notes in Artificial Intelligence<br />
: Eds.: Corchado Rodriguez, E.S.; Snasel, V.; Abraham, A.; Wozniak, M.; Grana, M.; Cho, S.-B. <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Miguel A. Veganzones, Mihai Datcu, Manuel Graña<br />
: [[Media:ICPRAM_2012_-_veganzones.pdf | Dictionary based hyperspectral image retrieval]] <br />
: Proceedings of the [http://icpram.org 1st International Conference on Pattern Recognition Applications and Methods], pages 426-432. 2012.<br />
: DOI: 10.5220/0003861904260432<br />
: Copyright SciTePress<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: Eds: José Manuel Ferrández, F. Javier Toledo, José Ramón Álvarez Sánchez, Félix de la Paz<br />
: Springer-Verlag Berlin, Heidelberg<br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Israel Rebollo and Manuel Graña.<br />
: "Further results of Gravitational Swarm Intelligence for Graph Coloring" [[media: nabic_israel.pdf|draft]]<br />
: Nature and Biologically Inspired Computing (NaBIC), 2011, Salamanca, Spain. 19-21 Oct. 2011<br />
: DOI: Digital Object Identifier: 10.1109/NaBIC.2011.6089456<br />
: Pages: 183-188<br />
: ISBN 978-1-4577-1122-0<br />
<br />
; Israel Rebollo and Manuel Graña.<br />
: "Gravitational Swarm Approach for Graph Coloring"[[media: nicso_israel.pdf|draft]]<br />
: Proceedings of the [http://www.nicso2011.org/ NICSO 2011], Cluj-Napoca, Romania. Oct 20-22, 2011.<br />
: Studies in Computational Intelligence, 2011, Volume 387, 159-168, DOI: 10.1007/978-3-642-24094-2 <br />
: D.A. Pelta, N. Krasnogor, D. Dumitrescu, Camelia Chira and R. Lung (eds)<br />
: Publisher: Springer-Verlag Berlin / Heidelberg<br />
: ISBN 978-3-642-24093-5<br />
<br />
; Maite Termenon, Ariadna Besga, Jon Echeveste, Ana Gonzalez-Pinto and Manuel Graña.<br />
: "Alzheimer Disease Classification on Diffusion Weighted Imaging features"<br />
: Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br />
: Lecture Notes in Computer Science, 2011, Volume 6687/2011, 120-127, DOI: 10.1007/978-3-642-21326-7_14 <br />
: José Manuel Ferrández, José Ramón Álvarez Sánchez, Félix de la Paz and F. Javier Toledo (eds)<br />
: ISBN 978-3-642-21325-0<br />
<br />
; Ion Marqués, Manuel Graña.<br />
: [[Media:iwinac2011_ion.pdf | "Experiments on Lattice Independent Component Analysis for Face Recognition."]]<br />
: Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br />
: Lecture Notes in Computer Science, 2011, Volume 6678, pp.286-294, DOI: [http://dx.doi.org/10.1007/978-3-642-21326-7_31 10.1007/978-3-642-21326-7].<br />
: J. Ferrández, J. Álvarez Sánchez, F. de la Paz and F. Toledo (eds)<br />
: ISBN 978-3-642-21325-0<br />
<br />
; Alexandre Savio, Manuel Graña, Jorge Villanúa<br />
: Deformation based features for Alzheimer's disease detection with linear SVM.; <br />
: Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011) - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br />
<br />
; Miguel A. Veganzones, Manuel Graña.<br />
: [[Media:Whispers2011_veganzones.pdf | "On the validation of a spectral/spatial CBIR system for hyperspectral images."]]<br />
: Proceedings of the [http://www.ieee-whispers.com/ 3rd Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (IEEE-WHISPERS 2011)]. 2011.<br />
<br />
; Avid Román-González, Miguel A. Veganzones, Manuel Graña, Mihai Datcu. <br />
: [[Media:esa2011_roman-gonzalez_veganzones.pdf | "A novel data compression technique for remote sensing data mining."]]<br />
: Proceedings of the [http://rssportal.esa.int/tiki-index.php?page=2011_ESA-EUSC-JRC ESA-EUSC-JRC 2011].<br />
: P. Soille, L. Gueguen, S. D'ELia, P.G. Marchetti, L. Colaicomo, M. Datcu (eds) pp. 101-104<br />
: ISBN 978-92-79-19708-6<br />
<br />
; Miguel A. Veganzones, Manuel Graña<br />
: [[Media:esa2011_veganzones_grana.pdf | "Validation of remote sensing content-based information retrieval (RS-CBIR) systems upon scarce data."]]<br />
: Proceedings of the [http://rssportal.esa.int/tiki-index.php?page=2011_ESA-EUSC-JRC ESA-EUSC-JRC 2011].<br />
: P. Soille, L. Gueguen, S. D'ELia, P.G. Marchetti, L. Colaicomo, M. Datcu (eds) pp. 93-96<br />
: ISBN 978-92-79-19708-6<br />
<br />
; Miguel A. Veganzones, Manuel Graña<br />
: [[Media:SOCO2011-veganzones-camera_ready.pdf | "Validation of a Hyperspectral Content-Based Information Retrieval (RS-CBIR) System upon scarce data"]]<br />
: Proceedings of the [http://soco.usal.es/ International Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011)]<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications ([http://soco.usal.es/ SOCO 2011]), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57<br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
; Maite Termenon, Manuel Graña<br />
: Further results on Alzheimer Disease Detection on structural MRI features<br />
: Proceedings of the [http://soco.usal.es/ International Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011)]<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 515-522, DOI: 10.1007/978-3-642-19644-7_54 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
;Véronique Amarger, Dominik M. Ramík, Ramon Moreno, Lucile Rossi, Kurosh Madani, Manuel Graña<br />
:"Wildland Fires’ Outlines Extraction a Spherical Coordinates Framed RGB Color Space Dichromatic Reflection Model Based Image Segmentation Approach" . Minks, Belarus, 18-20 May 2011 [http://lsi.bas-net.by/conferences/prip2011/ PRIP'11] <br />
<br />
;Ramón Moreno, Manuel Graña, Dominik M. Ramík, Kurosh Madani<br />
:"Image Segmentation by Spherical Coordinates" . Minks, Belarus, 18-20 May 2011 [http://lsi.bas-net.by/conferences/prip2011/ PRIP'11] <br />
<br />
; Ramón Moreno, Manuel Graña, Alicia d'Anjou<br />
:"A Hybrid Color Distance for Image Segmentation".Part II, Hybrid Artificial Intelligence Systems LNAI 6679, pp. 447–454, 23-25 May 2011 [http://hais.pwr.wroc.pl/ HAIS'11] ISBN:978-3-642-21218-5<br />
<br />
; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br />
: "Empirical Study of Q-Learning Based Elemental Hose Transport Control".<br />
: Proceedings of the [http://hais.pwr.wroc.pl/ HAIS'11], Part II<br />
: Lecture Notes in Computer Science, 2011, Volume 6679/2011, 455-462, DOI: 10.1007/978-3-642-21222-2<br />
: Editors: Corchado, Emilio and Kurzynski, Marek and Wozniak, Michal<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-21218-5<br />
<br />
;Ramón Moreno, Manuel Graña, Alicia d'Anjou<br />
:"A geometrical method of diffuse and specular image components separation". Advances in Computational Intelligence,Lecture Notes in Computer Science, 2011, Volume 6692/2011, 83-89, Eds:J.Cabestani, I.Rojas and G.Goya. DOI: 10.1007/978-3-642-21498-1_11 ISBN:978-3-642-21497-4<br />
<br />
; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br />
: "Concurrent Modular Q-Learning with Local Rewards on Linked Multi-Component Robotic Systems"<br />
: Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br />
: Lecture Notes in Computer Science, 2011, Volume 6686/2011, 148-155, DOI: 10.1007/978-3-642-21344-1_16 <br />
: Editors: José Manuel Ferrández, José Ramón Álvarez Sánchez, Félix de la Paz and F. Javier Toledo (eds)<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-21343-4<br />
<br />
; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br />
: "Towards concurrent Q-Learning on Linked Multi-Component Robotic Systems"<br />
: Proceedings of the [http://hais.pwr.wroc.pl/ HAIS'11], Part II<br />
: Lecture Notes in Computer Science, 2011, Volume 6679/2011, 463-470, DOI: 10.1007/978-3-642-21222-2_56<br />
: Editors: Corchado, Emilio and Kurzynski, Marek and Wozniak, Michal<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-21218-5<br />
<br />
==2010==<br />
<br />
;Moujahid, A.; d'Anjou, A.; Torrealdea, F.J.; Torrealdea, F.<br />
:Energetic considerations on the dynamics of Hodgkin-Huxley neurons<br />
:2010 Sixth International Conference on Natural Computation (ICNC 2010)<br />
:On page(s): 3156 - 3163<br />
:Location: Yantai, Shandong<br />
:ISBN: 978-1-4244-5958-2<br />
:INSPEC Accession Number: 11554266 <br />
<br />
; Ion Marques, Manuel Graña<br />
: Face processing for security: a short review<br />
: A. Herrero, E. Corchado, C. Redondo, A. Alonso (eds) Computational Intelligence in Security for Information Systems 2010, Adv. Int. and Soft Computing, vol. 85, Springer Verlag, 2010<br />
: pp. 89-96<br />
: ISBN 978-3-642-16625-9<br />
<br />
; Jose Manuel Lopez-Guede, Ekaitz Zulueta, Borja Fernández and Manuel Graña<br />
: Multi-Robot Systems Control Implementation<br />
: Suraiya Jabin (Ed.), Robot Learning, pp.137-150. Sciyo 2010.<br />
: ISBN 978-953-307-104-6<br />
<br />
; C. Hernandez, H. Viana, M.A. Veganzones, L. Nunes, M. Graña, D. Lopes<br />
: Biomass estimation: a case study in a forest area of northern Portugal<br />
: D. Lopes et al. (eds) Mixed and pure forest in a changing world, <br />
: Univ. of Tras-os-Montes e Alto DOuro, (2010) ISBN 978-972-669-980-4<br />
<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
: ISBN 978-3-642-13802-7<br />
<br />
;Ivan Villaverde, Borja Fernandez-Gauna and Ekaitz Zulueta<br />
:''Lattice Independent Component Analysis for mobile robot localization''<br />
:In E. Corchado et al. (Eds.), The 5th International Conference on Hybrid Artificial Intelligence Systems (HAIS 2010), Part II, LNAI vol. 6077, pp. 335-342. Springer, Heidelberg, 2010. (ISBN 978-3-642-13802-7). [http://dx.doi.org/10.1007/978-3-642-13803-4_42 DOI]<br />
<br />
;I. Macía, M. Graña, and C. Paloc<br />
:Towards a Proposal for a Vessel Knowledge Representation Model<br />
:R. Setchi et al. (Eds.): KNOWLEDGE-BASED AND INTELLIGENT INFORMATION AND ENGINEERING SYSTEMS KES 2010, Part IV, LNAI 6279, pp. 80--87. Springer Heidelberg (2010)<br />
: ISBN-13 978-3-642-15383-9 <br />
: [[media:Kes-2010-i-macia.pdf|slides]]<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers<br />
<br />
; Miguel A. Veganzones, Carmen Hernández<br />
:[[Media:Hais2010-veganzones.pdf | "On the use of a hybrid approach to contrast Endemember Induction Algorithms"]]<br />
: Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.69 - 76 Vol. 2<br />
: ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_30 <br />
<br />
; Ramón Moreno, J.M. López-Guede, Alicia d'Anjou<br />
: Hybrid Color Space Transformation to Visualize Color Constancy.<br />
: Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.241 - 247 Vol. 2<br />
: ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_30 <br />
<br />
; José Manuel López-Guede, Ekaitz Zulueta, Borja Fernández-Gauna<br />
: Neuronal Implementation of Predictive Controllers<br />
: Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.312 – 319 Vol. 2<br />
: ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_39<br />
<br />
; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Ekaitz Zulueta<br />
: Linked Multicomponent Robotic Systems: Basic Assessment of Linking Element Dynamical Effect <br />
: Hybrid Artificial Intelligent Systems, Part I, Manuel Grana Romay; Emilio S. Corchado Rodriguez; Maite Garcia-Sebastian (Eds.), (LNCS/LNAI) Vol. 6076, Springer Verlag, 2010, pp.73 – 79<br />
: ISBN 978-3-642-13768-6 : DOI: 10.1007/978-3-642-13769-3_9<br />
<br />
; Ramón Moreno, Manuel Graña, Alicia d'Anjou <br />
: A image color Gradient Preserving Color constancy<br />
: FUZZ-IEEE 2010, IEEE catalog Number: CFP10FUZ-DVD pp.710-714, Barcelona, Spain ([[media:Wcci2010ramon.pdf |Download slides]])<br />
: ISBN 978-1-4244-6920-8<br />
<br />
;Manuel Graña, Carmen Hernández, Alicia D’Anjou, and Blanca Cases<br />
:Percolating Swarm Dynamics, [http://www.youtube.com/watch?v=PKN-n9XuU3k]<br />
:N. García-Pedrajas, F. Herrera, C. Fyfe, J.M. Benitez, M. Ali (eds.) Trends in Applied Intelligent Systems: Proc. IEA/AIE 2010, Part III, LNAI 6098, pp. 538–545<br />
:ISBN 978-3642130328<br />
<br />
;Andoni Beristain Iraola, Manuel Graña Romay<br />
:Interactive Multimedia Tabletops (IMT) for Casual Users <br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 681-688<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
;R. Martínez, K. Lopez de Ipiña, E. Irigoyen, N. Asla, N. Garay, A. Ezeiza, I. Fajardo<br />
:Emotion Elicitation Oriented to the Development of a Human Emotion Management System for People with Intellectual Disabilities <br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 689-696<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
;N. Barroso, K. Lopez de Ipiña, A. Ezeiza<br />
:Acoustic Phonetic Decoding Oriented to MultilingualSpeech Recognition in the Basque Context <br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 697-704<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
;K. Lopez de Ipiña, M.C. Hernández, M. Graña, E. Martinez, C. Vaquero<br />
:A Computer-Aided Decision Support System for Shoulder Pain Pathology <br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 705-712<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
;A. Moujahid, A. D’Anjou, F.J. Torrealdea<br />
:Energy Cost Reduction in the Synchronization of a Pair of Nonidentical Coupled Hindmarsh-Rose Neurons <br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 657-664<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
;A. Conde, K. Lopez de Ipiña, M. Larrañaga, J.A. Elorriaga, J.M. Lopez, E. Irigoyen, N. Garay-Vitoria, A. Ezeiza, J. Rubio<br />
:An Intelligent Tutoring System Oriented to the Integration of People with Intellectual Disabilities<br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 639-647<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
; Ramón Moreno, Manuel Graña, Alicia d'Anjou<br />
: A color transformation for robust detection of color landmarks in robotic contexts<br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 665-672<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
;Ivan Villaverde, Zelmar Echegoyen, Ramon Moreno, Manuel Graña<br />
:Experiments on Robotic Multi-agent System for Hose Deployment and Transportation <br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 573-580<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
; Manuel Graña, Blanca Cases, Carmen Hernandez, and Alicia D’Anjou<br />
:Further results on swarms solving Graph Coloring<br />
:D. Taniar, O. Gervasi, B. Murgante, E. Pardede, B.O. Apduhan (Eds.): Computational Science and it applications, Proc. ICCSA 2010, Part III, LNCS 6018, pp. 541--551. Springer, Heidelberg (2010)<br />
: ISBN 978-3-642-12178-4<br />
<br />
; Andoni Beristain, Manuel Graña<br />
: An stable skeletonization for tabletop gesture recognition<br />
:D. Taniar, O. Gervasi, B. Murgante, E. Pardede, B.O. Apduhan (Eds.): Computational Science and it applications, Proc. ICCSA 2010, Part I, LNCS 6016, pp. 610--621. Springer, Heidelberg (2010)<br />
:ISBN 978-3-642-12155-5<br />
<br />
==2009==<br />
<br />
;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou, Abdelmalik Moujahid<br />
:Computing the energy cost of the information transmitted by model biological neurons<br />
:AIP Conf. Proc., Volume 1148, Issue 1, August 13, 2009, Pages 250-253<br />
:ISBN: 978-0-7354-0685-8<br />
<br />
;Iñigo Barandiaran and Charlotte Cottez and Céline Paloc and Manuel Graña<br />
:Comparative Evaluation of Random Forest and Fern Classifiers for Real-Time Feature Matching<br />
:Selected Readings in computer graphics, pp. 418-427<br />
: Fraunhofer Institute for Computer Graphics Research<br />
<br />
;Jose Manuel Lopez-Guede, Manuel Graña, Ekaitz Zulueta, Oscar Barambones<br />
: Economical Implementation of Control Loops for Multi-Robot Systems <br />
: Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br />
:ISBN 978-3-642-02489-4.<br />
:pp.1053-1059<br />
<br />
;Zelmar Echegoyen, Alicia d’Anjou, Ivan Villaverde, Manuel Graña<br />
:Towards the adaptive control of a multirobot system for an elastic hose <br />
: Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br />
:ISBN 978-3-642-02489-4. <br />
:pp. 1045-1052<br />
<br />
;Ivan Villaverde, Zelmar Echegoyen and Manuel Graña<br />
:Neuro-Evolutive system for ego-motion estimation with a 3D camera. <br />
: Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br />
:ISBN 978-3-642-02489-4.<br />
:pp 1021-1028<br />
<br />
;Iván Macía Oliver, Jon Haitz Legarreta, Céline Paloc, Manuel Graña, Josu Maiora, Guillermo García<br />
:Segmentation of Abdominal Aortic Aneurysms in CT Images using a Radial Model Approach [[media:IMacia IDEAL2009 Segmentation of AAAs in CT Images.pdf|draft]]<br />
: Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br />
: IISBN 978-3-642-04393-2<br />
:ISSN 0302-9743<br />
:pp.664-671<br />
<br />
;Josu Maiora, Guillermo García, Arantxa Tapia, Ivan Macía, Jon Haitz Legarreta, Manuel, Graña<br />
:Stent Graft Change Detection after Endovascular Abdominal Aortic Aneurysm Repair. [[media:IDEAL-2009-Maiora.pdf|draft]]<br />
:Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br />
: IISBN 978-3-642-04393-2<br />
:ISSN 0302-9743<br />
:pp.656-663<br />
<br />
;Iñigo Barandiaran, Iván Macía, Eva Berckmann, Diana Wald, Michael Pierre Dupillier, Celine Paloc, and Manuel Graña<br />
:An automatic segmentation and reconstruction of mandibular structures from CT-data [[media:IDEAL-2009-V3(No Software)Barandiaran.pdf|draft]]<br />
: Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br />
: IISBN 978-3-642-04393-2<br />
:ISSN 0302-9743<br />
:pp.649-655<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa, <br />
: Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection [[media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]] [[media:Presentation GarciaSebastianSavio-VBM SPM SVM-2009.pdf | slides]]<br />
: Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br />
: IISBN 978-3-642-04393-2<br />
:ISSN 0302-9743<br />
:pp.641-648<br />
<br />
; Blanca Cases, Abdelmalik Moujahid, Manuel Graña, Alicia d'Anjou<br />
:Chaotic patterns in crowd simulation<br />
: Proc ECAL 2009, pp ***<br />
: ISBN pending<br />
<br />
;Manuel Graña, Maite Garcia-Sebastián, Carmen Hernandez<br />
: Lattice Independent Component Analysis for fMRI analysis [[media:Grana-icann-2009.pdf|draft]] [[media:ICANN-2009-Grana.pdf|slides]]<br />
: M. Polycarpou, C. Panayiotou, C. Alippi, G. Ellinas (Eds.), Artificial Neural Networks - ICANN 2009, LNCS 5768, Springer Verlag, pp.725-734<br />
: ISBN 978-3-642-04276-8<br />
<br />
;Ramón Moreno, Manuel Graña, Alicia d'Anjou,Carmen Hernandez<br />
: Bayesian Reflectance Component Separation. [[media:KES2009-DRM.pdf|draft]]<br />
: Juan D. Velásquez, Sebastián A. Ríos, Robert J. Howlett, Lakhmi C. Jain (eds.), Knowledge-Based and Intelligent Information and Engineering Systems, Proceedings of 13th International Conference, KES 2009, Santiago, Chile, September 28-30, 2009, parte II, LNCS 5712, Springer Verlag, pp.846-852<br />
: ISBN 978-3-642-04591-2<br />
<br />
;Carlos Toro, Manuel Graña, Jorge Posada, Javier Vaquero, Cesar Sanin, Edward Szczerbicki<br />
: Domain modeling based on Engineering Standards. [[media:KES2009 ctoroV9.pdf|draft]]<br />
: Juan D. Velásquez, Sebastián A. Ríos, Robert J. Howlett, Lakhmi C. Jain (eds.), Knowledge-Based and Intelligent Information and Engineering Systems, Proceedings of 13th International Conference, KES 2009, Santiago, Chile, September 28-30, 2009, parte I, LNCS 5711, Springer Verlag, pp.95-102<br />
: ISBN 978-3-642-04594-3<br />
<br />
;Ivan Villaverde, Manuel Graña<br />
:An Improved Evolutionary Approach for Egomotion Estimation with a 3D TOF Camera<br />
: J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 390-398<br />
: ISBN 978-3-642-02266-1<br />
<br />
; Zelmar Echegoyen, Alicia d'Anjou, Manuel Graña<br />
: On the control of a multi-robot system for the manipulation of an elastic hose<br />
: J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 382-389<br />
: ISBN 978-3-642-02266-1<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br />
: Results of an Adaboost approach on Alzheimer's Disease detection on MRI [[media:Presentation GarciaSebastianSavio-VBM SPM SVM-2009.pdf|slides]]<br />
: J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 114-123<br />
: ISBN 978-3-642-02266-1<br />
<br />
; Carlos Toro, Manuel Graña, Jorge Posada<br />
:An architecture for the Semantic Enhancement of Virtual Engineering Applications<br />
:Intelligent Systems for Knowledge Management, <br />
: Ngoc Thanh Nguyen and Edward Szczerbicki (Editors), pp.175-196, Springer Verlag 2009<br />
: ISBN 978-3-642-04169-3<br />
<br />
; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br />
:On the Use of Morphometry Based Features for Alzheimer's Disease Detection on MRI. [http://www.springerlink.com/content/p101v5833k55512g/?p=d18ee031594e45ff9562cd2b97980b2c&pi=119]<br />
:Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I)<br />
: Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964<br />
: ISBN 978-3-642-02477-1<br />
<br />
;Manuel Graña, Iván Villaverde, Jose Manuel López Guede, Borja Fernández<br />
:Review of Hybridizations of Kalman Filters with Fuzzy and Neural Computing for Mobile Robot Navigation [[media:HAIS-2009-grana-kalman-draft.pdf|draft]] [[media:HAIS-2009-kalman-presentacion.pdf|slides]]<br />
: 4th International Conference on Hybrid Artificial Intelligent Systems (HAIS09)<br />
: E. Corchado, X. Wu, E. Oja, A. Herrero, B. Baruque (eds), Springer Verlad 2009, LNAI 5572, pp. 121-128<br />
: ISBN 978-3-642-02318-7<br />
<br />
==2008==<br />
<br />
;E. Irigoyen, K. L. de Ipiña, N. Garay, I. Fajardo, A. Goicoechea, A. Ezeiza, M. Peñagarikano, G. Bordel, A. Conde, M. Larrañaga, A. Arruti, L.J. Rodríguez, J.M. López, E. Zulueta, M. Graña, J. Rubio <br />
:A ROBUST INTELLIGENT SYSTEM FOR INTERACTING WITH PEOPLE WITH COGNITIVE DISABILITIES <br />
: INTED2008 Proceedings<br />
:L. Gómez Chova, D. Martí Belenguer, I. Candel Torres (eds)<br />
:International Association of Technology, Education and Development , IATED, Valencia <br />
:ISBN: 978-84-612-0190-7 <br />
<br />
;B. Cases, C. Hernandez, M. Graña, A. d'Anjou.<br />
:On the ability of Swarms to compute the 3-coloring of graphs.<br />
:In S. Bullock, J. Noble, R. Watson, M.A. Bedau (Eds.), Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems, pp. 102-109, MIT Press, 2008<br />
: ISBN 978-0-262-75017-2, <br />
<br />
;Ivan Villaverde and Manuel Graña, <br />
: A Hybrid Intelligent System for Robot Ego Motion Estimation with a 3D Camera<br />
: Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds), LNAI 5271, Springer Verlag pp: 657-664<br />
: ISBN 978-3-540-87655-7<br />
<br />
; Ramón Moreno, Alicia d’Anjou and Manuel Graña, <br />
:Evolutive Parametric Approach for Specular Correction in the Dichromatic Reflection Model<br />
: Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 665-672<br />
: ISBN 978-3-540-87655-7<br />
<br />
; José Manuel López-Guede, Manuel Graña and Ekaitz Zulueta, <br />
: On Distributed Cooperative Control for the Manipulation of a Hose by a Multirobot System<br />
: Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 673-679<br />
: ISBN 978-3-540-87655-7<br />
<br />
;R.J. Duro, M. Graña and J. de Lope, <br />
:On the need of Hybrid Intelligent Systems in Modular and Multi Robotics<br />
: Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 641-648<br />
: ISBN 978-3-540-87655-7<br />
<br />
; Manuel Graña, Maite García-Sebastián, Ivan Villaverde, Elsa Fernandez<br />
: An approach from Lattice Computing to fMRI analysis [[Media:Proceedings-cla2008-workshop.pdf|pdf]]<br />
: LBM 2008 (CLA 2008), Proceedings of the Lattice-Based Modeling Workshop, Vassilis Kaburlasos, Uta Priss, Manuel Graña (eds), pp:33-44<br />
: ISBN 978–80–244–2112–4<br />
<br />
; Miguel Angel Veganzones, Manuel Graña<br />
: Endmember extraction methods: a short review<br />
: I. Lovrek, R.J. Howlett, L.C. Jain (Eds.): KES 2008, Part III, LNAI 5179, pp:400-407; Springer-Verlag Berlin Heidelberg. 2008.<br />
: ISBN 978-3-540-85566-8<br />
<br />
;M. Graña. <br />
:A Brief Review of Lattice Computing [[media:WWCI-2008-lattice-computing-review-draft.pdf|draft]]<br />
:Proceedings FUZZ-IEEE 2008, pp.1777-1781<br />
:ISBN 978-1-4244-1819-0<br />
<br />
;Maite García-Sebastián, A. M. Savio, M. Graña. <br />
:Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm <br />
: Proceedings CEC 2008, pp.4146-4150<br />
:ISBN 978-1-4244-1822-0<br />
<br />
;Diego Sal, Manuel Graña<br />
:''A Multiobjective Evolutionary Algorithm for Hyperspectral Image Watermarking''<br />
: Computational Intelligence for Remote Sensing, Manuel Graña, Richard Duro (eds), Springer Verlag, Studies in Computational Intelligence series, pp.49-60<br />
: ISBN 978-3-540-79352-6<br />
<br />
; Miguel Angel Veganzones, José Orlando Maldonado, Manuel Graña<br />
:''On Content-Based Image Retrieval Systems For Hyperspectral Remote Sensing Images''<br />
: Computational Intelligence for Remote Sensing, Manuel Graña, Richard Duro (eds), Springer Verlag, Studies in Computational Intelligence series, pp.97-111<br />
: ISBN 978-3-540-79352-6<br />
<br />
==2007==<br />
<br />
; M. Graña<br />
:''State of the art in lattice computing for artificial intelligence applications''<br />
: Mathematical and Computational Models, R. Nadarajan R. Anitha, C. Porkodi (eds), pp. 233--242<br />
: New Delhi, India:Narosa Publishing House <br />
:ISBN 978-81-7319-882-3<br />
<br />
;I. Villaverde, M. Graña, A. d'Anjou<br />
:''Morphological Independence for Landmark Detection in Vision Based SLAM''<br />
:Computational and ambient intelligence, F. Sandoval, A. Prieto, J. Cabestany, M. Graña (eds), LNCS 4507, Springer Verlag, Heidelberg, pp. 837-844<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004, 2005: 0.513, 0.402<br />
:ISBN 3-540-73006-0<br />
:ISSN 0302-9743<br />
<br />
;Maite García-Sebastián, Ana I. Gonzalez, Manuel Graña<br />
:''Derivation of SOM-like rules for intensity inhomogeneity correction in MRI''<br />
:Computational and ambient intelligence (IWANN), F. Sandoval, A. Prieto, J. Cabestany, M. Graña (eds) LNCS 4507, Springer Verlag, Heidelberg, pp. 669-676, 2007.<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004, 2005: 0.513, 0.402<br />
:ISBN 3-540-73006-0<br />
:ISSN 0302-9743<br />
<br />
;Manuel Graña, Ivan Villaverde, Ramon Moreno, Francisco X. Albizuri<br />
:''Convex coordinates from lattice independent sets for visual pattern recognition''<br />
:Computational Intelligence Based on Lattice Theory, G. Ritter, V. Kaburlasos (eds), Springer Verlag, pp: 99-126<br />
:ISBN 978-3-540-72686-9<br />
<br />
;Zelmar Echegoyen, Alicia d'Anjou, Manuel Graña<br />
:''Modeling a Legged Robot for Visual Servoing'' [[media:Presentacion-ICCSA-2007-zelmar.pdf|slides]] [[media:Iccsa-2007-aibo-zelmar.pdf|draft]]<br />
:Computational Science and Its Applications -- ICCSA 2007, Osvaldo Gervasi and Marina L. Gavrilova (eds) LNCS 4707, Springer Verlag, pp: 798-810<br />
:ISBN 978-3-540-74482-5<br />
<br />
;Maite García-Sebastián, Manuel Graña<br />
:''SOM for intensity inhomogeneity correction in MRI''<br />
:ESANN 2007, M. Verleysen (ed), D-side Publications, pp: 109-114<br />
:ISBN 2-930307-07-2<br />
<br />
;Ramon Moreno, Manuel Grana Romay, Miguel Angel Veganzones<br />
:''A Remote Mycological Assistant''<br />
:IDAACS'2007, Anatoly Sachenko, Peter J. A. Reusch, Richard Duro, Wieslaw Winiecki (eds), IEEE Press, pp. 408-412<br />
:ISBN 1-4244-1348-6<br />
<br />
;I. Villaverde, M. Graña, J.L. Jimenez<br />
:''Lattice Independence and Vision Based Mobile Robot Navigation''<br />
:Knowledge-Based Intelligent Information and Engineering Systems, KES 2007, Bruno Apolloni, Robert J. Howlett, and Lakhmi Jain (Eds.) LNAI 4693, Springer Verlag, pp: 1196-1203<br />
:ISBN 978-3-540-74826-7<br />
<br />
;Zelmar Echegoyen, Alicia d’Anjou, Manuel Graña <br />
:''Contribution to legged robot visual servoing''<br />
:Knowledge-Based Intelligent Information and Engineering Systems, KES 2007, Bruno Apolloni, Robert J. Howlett, and Lakhmi Jain (Eds.) LNAI 4693, Springer Verlag, pp: 1179-1186<br />
:ISBN 978-3-540-74826-7<br />
<br />
;I. Cearreta, J.M. López, K. López de Ipiña, M. Hernandez, N. Garay, M. Graña, A. Álvarez<br />
:''Affective Computing as a component of Ambient Intelligence''<br />
:INFORMATION SCIENCES 2007, Proceedings of the 10th Joint Conference, Paul Yingjun Cao, Hengda Cheng, Donald Hung, Cengiz Kahraman, Chung Wha Ngo, Yukio Ohsawa, Manuel Grana Romay, Mu Chun Su, Athanasios Vasilakos, Douglas Wang, Paul P. Wang (eds), Singapore: World Scientific, pp: 1580-1586<br />
:ISBN 978-981-270-967-7<br />
<br />
;M. Graña, J.L. Jimenez, C. Hernandez<br />
:''Lattice Independence, Autoassociative Morphological Memories and unsupervised segmentation of Hyperspectral Images''<br />
:INFORMATION SCIENCES 2007, Proceedings of the 10th Joint Conference, Paul Yingjun Cao, Hengda Cheng, Donald Hung, Cengiz Kahraman, Chung Wha Ngo, Yukio Ohsawa, Manuel Grana Romay, Mu Chun Su, Athanasios Vasilakos, Douglas Wang, Paul P. Wang (eds), Singapore: World Scientific, pp: 1624-1631<br />
:ISBN 978-981-270-967-7<br />
<br />
;Jose Orlando Maldonado, David Vicente Herrera, Manuel Graña Romay<br />
:''Visual texture characterization of recycled paper quality''<br />
:Innovations in Hybrid Intellligent Systems, Advances in Soft Computing Vol. 44, Springer Verlag, pp: 288-295<br />
:ISBN 978-3-540-74971-4<br />
<br />
; Israel Rebollo, Manuel Graña<br />
: Gestión Multiagente de Almacenes Usando RFID<br />
: 1 jornadas científicas sobre RFID, A. García, J. Bravo, R. Hervás, J.C. Encinas, Gabriel Chavira, Salvador W. Nava, J. M. Pastor, P. García, J. G.Escribano (EDS), pp. 7--12<br />
:ISBN 978-84-612-0542-4<br />
<br />
==2006==<br />
<br />
;Ana I. González, Alicia D’Anjou, Maite García-Sebastián, Manuel Graña <br />
:''SOM and Neural Gas as Graduated Nonconvexity Algorithms''<br />
:The 2006 International Conference on Computational Science and its Applications -- ICCSA 2006, M. Gavrilova et al.(Eds.) LNCS 3982, Springer Verlag, Berlin Heidelberg, ICCSA 2006, part III, pp. 1143-1152. JCR(2005) 0.402.<br />
:ISBN 3-540-34075-0<br />
<br />
;C.Hernández, J. Gallego, Maite García-Sebastián, Manuel Graña Romay<br />
:''On Clustering Performance Indices for Multispectral Image''<br />
:Knowledge-Based Intelligent Information and Engineering Systems, 10 International Conf. -- KES 2006, B. Gabrys, R. J. Howlett and L. C. Jain (Eds.) LNCS 4253, Springer Verlag, Berlin, KES 2006, Part III, pp. 277-283. JCR(2005) 0.402.<br />
:ISBN 978-3-540-46542-3<br />
<br />
;José Orlando Maldonado, David Vicente, Miguel Angel Veganzones, Manuel Graña<br />
:[[Media:Jic07-maldonado.pdf | "Spectral indexing for Hyperspectral image CBIR"]]<br />
:ESA-EUSC 2006 Image Information Mining for Security and Intelligence Proceedings (WPP-274).<br />
<br />
==2005==<br />
<br />
;Maite García-Sebastián, E.Fernandez, M. Graña, F.J. Torrealdea <br />
:''A gradient descent MRI illumination correction algorithm''<br />
:Computational Intelligence an Bioinspired Systems -- IWANN 2005, F. Sandoval, A. Prieto, J. Cabestany (eds) LNCS 3512, Springer Verlag, Berlin, vol. 3512, pp. 913-920. JCR(2005) 0.402.<br />
:ISBN 3-540-26208-3</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18147
Usuario:Daria.chizhik
2015-09-23T10:55:14Z
<p>Chyzhyk.darya: /* 2014 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease [[media: 00450034.pdf|pdf]]<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Cap%C3%AD%C2%ADtulos_de_Libro&diff=18145
Capítulos de Libro
2015-09-23T10:48:46Z
<p>Chyzhyk.darya: /* 2014 */</p>
<hr />
<div>== 2015 ==<br />
<br />
; Manuel Graña, J. David Nuñez-Gonzalez<br />
: "An instance of social intelligence in the internet of things: bread making recipe recommendation by ELM Regression" <br />
: E. Onieva et al. (Eds.): HAIS 2015, LNAI 9121, pp. 1–10, 2015. Springer International Publishing Switzerland 2015<br />
: DOI: 10.1007/978-3-319-19644-2 2<br />
<br />
;Manuel Graña and Ion Marques<br />
:Experiments of Skin Detection in Hyperspectral Images<br />
:J.M. Ferrández Vicente et al. (Eds.): IWINAC 2015, Part II, LNCS 9108, pp. 184–192, 2015. <br />
: Springer Verla<br />
:DOI: 10.1007/978-3-319-18833-1_20<br />
<br />
;Aitor Moreno-Fernandez-de-Leceta, Unai Arenal Go ́mez, Jose Manuel Lopez-Guede, and Manuel Graña<br />
:Real Implantation of an Expert System for Elderly Home Care<br />
: 2015 E. Onieva et al. (Eds.): HAIS 2015, LNAI 9121, pp. 1–11, 2015. Springer International Publishing Switzerland<br />
: DOI: 10.1007/978-3-319-19644-2 55<br />
<br />
<br />
;Ion Marqués, Manuel Graña, Stephanie M. Sanchez, Mohammed Q. Alkhatib, Miguel Velez-Reyes<br />
:Person detection in hyperspectral images via skin segmentation using an active learning approach<br />
:Proc. SPIE 9472, Algorithms and Technologies for Multispectral, Hyperspectral, and Ultraspectral Imagery XXI, 947207 (May 21, 2015); <br />
: doi: 10.1117/12.2179333<br />
<br />
==2014==<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310, ISBN print 978-1-61499-473-2, ISBN online 978-1-61499-474-9, Pages 428<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
;Ion Marques, Manuel Graña, <br />
:"Hybrid Sparse Linear and Lattice Method for Hyperspectral Image Unmixing", en Polycarpou, Marios et al. (eds) Hybrid Artificial Intelligence Systems, LNCS 8480, pp. 266-273<br />
:http://dx.doi.org/10.1007/978-3-319-07617-1_24<br />
<br />
;Borja Ayerdi, Manuel Graña <br />
: Hyperspectral Image Nonlinear Unmixing by Ensemble ELM Regression" en Cao, Jiuwen et al. (eds) Proceedings of ELM-2014 Volume 2, pp.289-297 Proceedings in Adaptation, Learning and Optimization, 4, Springer<br />
: dx.doi.org/10.1007/978-3-319-14066-7_28<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: Fuzzy Systems (FUZZ-IEEE), 2014 IEEE International Conference on, pp.69-74, doi: 10.1109/FUZZ-IEEE.2014.6891700, ISSN 1098-7584<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Borja Fernandez-Gauna, Juan Luis Osa, Manuel Graña<br />
: Effect of Initial Conditioning of Reinforcement Learning Agents on Feedback Control Tasks over Continuous State and Action Spaces<br />
: International Joint Conference SOCO'14-CISIS'14-ICEUTE'14, pp. 125-134 ISBN 978-3-319-07994-3<br />
<br />
; J. David Nuñez-Gonzalez, Manuel Graña <br />
: "Experiments on Trust Prediction based on reputation features" <br />
: International Joint Conference SOCO’14-CISIS’14-ICEUTE’14 Advances in Intelligent Systems and Computing Volume 299, 2014, pp 367-37 <br />
<br />
; J. David Nuñez-Gonzalez, Manuel Graña <br />
: "On the effect of high order reputation information on Trust Prediction in Wikipedia’s Vote Network" <br />
: European Network Intelligence Conference 2014<br />
<br />
==2013==<br />
<br />
<br />
<br />
;Borja Fernandez-Gauna, Igor Ansoategui, Ismael Etxeberria-Agiriano, Manuel Graña<br />
:Empirical Study of the Sensitivity of CACLA to Sub-optimal Parameter Setting in Learning Feedback Controllers<br />
:International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, Advances in Intelligent Systems and Computing Volume 239, 2014, pp 101-108, Springer<br />
: DOI 10.1007/978-3-319-01854-6_11<br />
<br />
;Jose Manuel López-Guede, Jose Antonio Ramos-Hernanz, Manuel Graña <br />
: Artificial Neural Network Modeling of a Photovoltaic Module<br />
: International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, Advances in Intelligent Systems and Computing Volume 239, 2014, pp 389-397<br />
: DOI 10.1007/978-3-319-01854-6_40<br />
: ISBN 978-3-319-01853-9<br />
<br />
<br />
;Grana, M. ; Rebollo, I. <br />
: Instances of subconscious social intelligent computing<br />
: Computational Aspects of Social Networks (CASoN), 2013 Fifth International Conference on, 2013 , Page(s): 74 - 78<br />
: Digital Object Identifier: 10.1109/CASoN.2013.6622604 <br />
<br />
;Grana, M. ; Rebollo, I. <br />
:Convergence results on the stable states of a Gravitational Swarm solving the Graph Coloring Problem<br />
:Nature and Biologically Inspired Computing (NaBIC), 2013 World Congress on <br />
:Digital Object Identifier: 10.1109/NaBIC.2013.6617846 <br />
:Publication Year: 2013 , Page(s): 107 - 112<br />
<br />
<br />
;M. Graña<br />
:Subconscious Social Computational Intelligence<br />
:Computational Intelligence, Cyber Security and Computational Models, Proceedings of ICC3, 2013 G. Sai Sundara Krishnan, R. Anitha, R. S. Lekshmi, M. Senthil Kumar, Anthony Bonato and Manuel Graña (eds) Advances in Intelligent Systems and Computing 246, Springer India 2014, Pages 15-21<br />
: ISBN: 978-81-322-1679-7 (Print) 978-81-322-1680-3 (Online)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
;J. David Nuñez-Gonzalez, Manuel Graña <br />
<br />
:"Predicting Trust From Reputation in a Social Network of Reviewers by ELM" <br />
:Fuchen Sun, Kar-Ann Toh, Manuel Grana Romay, Kezhi Mao (Eds.): Adaptation, Learning and Optimization: Extreme Learning Machines 2013: Algorithms and Applications Volume 16 2014, <br />
:pp. 179—188 Springer (2014) ISSN 1867-4534 ISSN 1867-4542 (electronic) <br />
:ISBN 978-3-319-04740-9 ISBN 978-3-319-04741-6 (eBook) DOI 10.1007/978-3-319-04741-6 Springer Cham Heidelberg New York Dordrecht London <br />
<br />
;Manuel Graña, Ion Marqués, Alexandre Savio, Bruno Apolloni,<br />
:A domestic application of Intelligent Social Computing: the SandS project <br />
: International Joint Conference SOCO’13-CISIS’13-ICEUTE’13, A Herero et al. (eds) pp 221-228<br />
: Springer Verlag, Advances in Intelligent Systems and Computing, 239<br />
: ISBN 978-3-319-01853-9<br />
: DOI 10.1007/978-3-319-01854-6_23<br />
<br />
; Manuel Graña, J. David Nuñez-Gonzalez, Bruno Apolloni<br />
: A discussion on trust requirements for a social network of eahoukers [http://link.springer.com/chapter/10.1007/978-3-642-40846-5_54]<br />
: J.-S. Pan et al. (Eds.): Hybrid Artificial Intelligent Systems HAIS 2013 Proceedings, LNAI 8073, pp. 540--547. Springer, Heidelberg (2013)<br />
:ISBN: 978-3-642-40845-8 (Print) 978-3-642-40846-5 (Online)<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features<br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743 DOI 10.1007/978-3-642-40846-5_48<br />
<br />
; M. Termenon, M. Graña, A. Besga, J. Echeveste, J. M. Pérez and A. M. Gonzalez-Pinto<br />
: Diagnosis of Bipolar Disorder based on Principal Component Analysis and Support Vector Machines over the MRI deformation Jacobian<br />
: Proceedings of the 8th International Conference on Computer Recognition Systems CORES 2013<br />
: Advances in Intelligent Systems and Computing Volume 226, 2013, pp 569-578<br />
: Print ISBN: 978-3-319-00968-1, Online ISBN: 978-3-319-00969-8<br />
: ISSN 2194-5357<br />
<br />
;M. Graña, B. Apolloni, M. Fiasché, G. Galliani, C. Zizzo, G. Caridakis, G. Siolas, S. Kollias, F. Barriento, S. San Jose<br />
: Social and Smart: towards an instance of subconscious social intelligence [http://link.springer.com/chapter/10.1007/978-3-642-41016-1_32]<br />
: Proceedings IPMSC 2013 [http://delab.csd.auth.gr/eann2013/workshops.php?workshop_id=3]<br />
: L. Iliadis, H. Papadopoulos, and C. Jayne (Eds.): EANN 2013, Part II, CCIS 384, pp. 302–311, 2013<br />
: Springer<br />
: ISBN: 978-3-642-41015-4 (Print) 978-3-642-41016-1 (Online)<br />
<br />
;Israel Rebollo, Manuel Graña<br />
: User assistance tool for a WebService ERP [http://link.springer.com/chapter/10.1007/978-3-319-00563-8_24]<br />
: Trends in Practical Applications of Agents and Multiagent Systems, Javier Bajo Perez et al. (eds.), Advances in Intelligent Systems and Computing Volume 221, 2013, pp 193-200<br />
: Springer <br />
: SBN: 978-3-319-00562-1 (Print) 978-3-319-00563-8 (Online)<br />
<br />
;Borja Fernandez-Gauna, Igor Ansoategui, Ismael Etxeberria-Agiriano, and Manuel Graña<br />
:An Empirical Study of Actor-Critic Methods for Feedback Controllers of Ball-Screw Drivers<br />
:J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 441--450. Springer, Heidelberg (2013)<br />
: ISBN<br />
<br />
; Ion Marques and Manuel Graña<br />
:Greedy Sparsification WM Algorithm for Endmember Induction in Hyperspectral Images<br />
:J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 336--344. Springer, Heidelberg (2013)<br />
: ISBN<br />
<br />
; Jose Manuel Lopez-Guede, Manuel Graña, Jose Antonio Ramos-Hernanz, and Fernando Oterino<br />
:A Neural Network Approximation of L-MCRS Dynamics for Reinforcement Learning Experiments<br />
:J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 317--325. Springer, Heidelberg (2013)<br />
: ISBN<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
:J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
:J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
;Borja Ayerdi, Alexandre Savio, and Manuel Graña<br />
:Meta-ensembles of Classifiers for Alzheimer's Disease Detection Using Independent ROI Features<br />
:J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 122--130. Springer, Heidelberg (2013)<br />
: ISBN<br />
<br />
; B. Apolloni, M. Fiasche, G. Galliani, C. Zizzo, G. Caridakis, G. Siola, S. Kollia, M. Grana Romay, F. Barriento, S. San Jose<br />
:Social Things - The SandS instantiation<br />
: IoT-SoS 2013<br />
: ISBN<br />
<br />
; Alexandre Savio, Manuel Graña<br />
: ''An ensemble of classifiers guided by the AAL brain atlas for Alzheimer’s disease detection''<br />
: IWANN 2013, Part II, LNCS 7903, pp. 107--114. Springer, Heidelberg (2013)<br />
: Eds.: I. Rojas, G. Joya, and J. Cabestany<br />
: [[media:Iwann13_oasis_aal_draft.pdf|draft]]<br />
<br />
; Ramon Moreno, Manuel Graña and Kurosh Madani<br />
: ''A robust color Watershed transformation and image segmentation defined on RGB Spherical Coordinates''<br />
: Robotic Vision: Technologies for Machine Learning and Vision Applications, pp112-128 <br />
: doi:10.4018/978-1-4666-2672-0.ch007 ISBN: 978-1-4666-2734-5<br />
<br />
; J.M. Lopez-Guede, B. Fernandez-Gauna, R. Moreno and M. Graña,<br />
: ''Visual Detection in Linked Multi-Component Robotic Systems''<br />
: Robotic Vision: Technologies for Machine Learning and Vision Applications. pp78-97<br />
: doi:10.4018/978-1-4666-2672-0.ch007 ISBN: 978-1-4666-2734-5<br />
<br />
==2012==<br />
<br />
; MA Veganzones, M Graña<br />
:Lattice auto-associative memories induced supervised ordering defining a multivariate morphology on hyperspectral data<br />
: Hyperspectral Image and Signal Processing (WHISPERS), 2012 4th Workshop on, pp. 1-4<br />
: DOI 10.1109/WHISPERS.2012.6874333<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
;Miguel A. Veganzones, Mihai Datcu, Manuel Graña.<br />
: "Relevance feedback by dissimilarity spaces for hyperspectral CBIR." <br />
: [http://bookshop.europa.eu/is-bin/INTERSHOP.enfinity/WFS/EU-Bookshop-Site/en_GB/-/EUR/ViewPublication-Start?PublicationKey=LBNA25514 Proceedings of the ESA-EUSC-JRC 8th conference on image information mining, Knowledge discovery from earth observation data]. Edited by P. Soille, M. Iapaolo, P.G. Marchetti, and M. Datcu. European Comission. Pages: 1-5. 2012.<br />
: ISBN: 978-92-79-26419-1 ISSN: 1831-9424 DOI: 10.2788/49465<br />
<br />
;V. Amarger, D. M. Ramík, C. Sabourin, K. Madani, R. Moreno, L. Rossi, M. Graña, <br />
:"Spherical Coordinates Framed RGB Color Space Dichromatic Reflection Model Based Image Segmentation: Application to Wildland Fires’ Outlines Extraction", <br />
:Proceedings of International conference on Image Processing Theory, Tools and Applications (IEEE-IPTA 2012), Istanbul, Turkey, October 15 - 18, pp. 19-24, 2012. [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/275/IPTA-2012-Paper-299-Final-PDF.pdf]<br />
:ISBN: 978-1-4673-2582-0<br />
<br />
; Israel Rebollo and Manuel Graña<br />
: Dynamic Tabu Search for Non Stationary Social Network identification based on Graph Coloring<br />
: [http://www.springer.com/engineering/computational+intelligence+and+complexity/book/978-3-642-32921-0 Advances in Intelligent Systems and Computing][[media: israel_SOCO2012.pdf|Slides]]<br />
: Soft Computing Models in Industrial and Enviromental Applications, Vol. 188, pages 495 - 503, 2012.<br />
: Eds: Václav Snásel, Ajith Abraham and Emilio S. Corchado.<br />
: ISBN: 978-3-642-32921-0<br />
<br />
; Alexandre Savio<br />
: Supervised classification using deformation-based features for Alzheimer’s disease detection on the OASIS cross-sectional database <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2191 - 2200, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Eider Sanchez, Carlos Toro, Arkaitz Artetxe, Manuel Graña, Eduardo Carrasco, Frank Guijarro<br />
: A Semantic Clinical Decision Support System: conceptual architecture and implementation guidelines<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1390 - 1399, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; G. García, J. Maiora, A. Tapia, M. De Blas<br />
: Computer-aided Diagnosis of Abdominal Aortic Aneurysm after Endovascular Repair Using Texture Analysis<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 716-725, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Iñigo Barandiaran, John Congote, Jon Goenetxea, Oscar Ruiz<br />
: Evaluation of interest point detectors for image information extraction<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2170 - 2179, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Ramón Moreno, Alicia d'Anjou<br />
: Hyperspectral Image Segmentation by t-Watershed and Hyperspherical Coordinates<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2114 - 2121, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Ekaitz Zulueta<br />
: Towards a real time simulation of Linked Multi-Component Robotic Systems<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2019 - 2027, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Iñigo Barandiaran, Grégory Maclair, Izaro Goienetxea, Carlos Jauquicoa, Manuel Graña<br />
: A Comparative Study of Classifier Ensembles for Karyotyping<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1400 - 1407, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; M. Termenon, E. Fernández, A. Barrós-Loscertales, J.C. Bustamante, C. Ávila<br />
: Impact of Analysis Circularity: a Case Study in Cocaine Addiction detection on MRI<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2201 - 2209, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Arkaitz Artetxe, Eider Sanchez, Carlos Toro, Cesar Sanin, Edward Szczerbicki, Manuel Graña, Jorge Posada<br />
: Speed-up of a Knowledge-Based Clinical Diagnosis System using Reflexive Ontologies <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 1480 - 1489, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Adrian Agreda<br />
: Trust in communication and multiagent systems <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 816 - 822, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Miguel A. Veganzones<br />
: On hyperspectral morphology by lattice auto-associative memories supervised orderings<br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2122-2129, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain. <br />
<br />
; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Ramon Moreno, Manuel Graña<br />
: "Visual Detection in Linked Multi-Component Robotic Systems"<br />
: Published in: "Robotic Vision: Technologies for Machine Learning and Vision Applications"<br />
: Eds: Miguel Cazorla and Jose Garcia. IGI Global. <br />
: ISBN:<br />
<br />
; M. Termenon, M. Graña, A. Barrós-Loscertales, J. C. Bustamante, C. Ávila.<br />
: "Cocaine Dependent Classification using Brain Magnetic Resonance Imaging" [http://www.springerlink.com/content/k54353335gx22208/]<br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAISTermenon2012_Presentacion.pdf|Slides]]<br />
: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 448-454, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Ion Marqués and Manuel Graña<br />
: "Image Security and Biometrics: A Review" [http://dx.doi.org/10.1007/978-3-642-28931-6_42 Doi] [[media:Hais survey 03-11-2011.pdf|draft]]<br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012.[[media: imarques-HAIS2012.pdf|Slides]]<br />
: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 436-447, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Miguel A. Veganzones and Manuel Graña<br />
: "Hybrid computational methods for hyperspectral image analysis."<br />
: [http://www.springer.com/computer/ai/book/978-3-642-28930-9 HAIS 2012, Part II, LNCS 7209], pp. 424-435. 2012.<br />
<br />
; Israel Rebollo, Manuel Graña<br />
: "An empirical comparison of some approximate methods for Graph Coloring" [[media: hais_israel.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012), Salamanca, Spain. March 28-30, 2012. <br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part I, pp. 600-609, 2012. LNCS 7208 <br />
: DOI: 10.1007/978-3-642-28942-2_54<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: Series: Lecture Notes in Computer Science, Vol. 7209<br />
: Subseries: Lecture Notes in Artificial Intelligence<br />
: Eds.: Corchado Rodriguez, E.S.; Snasel, V.; Abraham, A.; Wozniak, M.; Grana, M.; Cho, S.-B. <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Miguel A. Veganzones, Mihai Datcu, Manuel Graña<br />
: [[Media:ICPRAM_2012_-_veganzones.pdf | Dictionary based hyperspectral image retrieval]] <br />
: Proceedings of the [http://icpram.org 1st International Conference on Pattern Recognition Applications and Methods], pages 426-432. 2012.<br />
: DOI: 10.5220/0003861904260432<br />
: Copyright SciTePress<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: Eds: José Manuel Ferrández, F. Javier Toledo, José Ramón Álvarez Sánchez, Félix de la Paz<br />
: Springer-Verlag Berlin, Heidelberg<br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Israel Rebollo and Manuel Graña.<br />
: "Further results of Gravitational Swarm Intelligence for Graph Coloring" [[media: nabic_israel.pdf|draft]]<br />
: Nature and Biologically Inspired Computing (NaBIC), 2011, Salamanca, Spain. 19-21 Oct. 2011<br />
: DOI: Digital Object Identifier: 10.1109/NaBIC.2011.6089456<br />
: Pages: 183-188<br />
: ISBN 978-1-4577-1122-0<br />
<br />
; Israel Rebollo and Manuel Graña.<br />
: "Gravitational Swarm Approach for Graph Coloring"[[media: nicso_israel.pdf|draft]]<br />
: Proceedings of the [http://www.nicso2011.org/ NICSO 2011], Cluj-Napoca, Romania. Oct 20-22, 2011.<br />
: Studies in Computational Intelligence, 2011, Volume 387, 159-168, DOI: 10.1007/978-3-642-24094-2 <br />
: D.A. Pelta, N. Krasnogor, D. Dumitrescu, Camelia Chira and R. Lung (eds)<br />
: Publisher: Springer-Verlag Berlin / Heidelberg<br />
: ISBN 978-3-642-24093-5<br />
<br />
; Maite Termenon, Ariadna Besga, Jon Echeveste, Ana Gonzalez-Pinto and Manuel Graña.<br />
: "Alzheimer Disease Classification on Diffusion Weighted Imaging features"<br />
: Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br />
: Lecture Notes in Computer Science, 2011, Volume 6687/2011, 120-127, DOI: 10.1007/978-3-642-21326-7_14 <br />
: José Manuel Ferrández, José Ramón Álvarez Sánchez, Félix de la Paz and F. Javier Toledo (eds)<br />
: ISBN 978-3-642-21325-0<br />
<br />
; Ion Marqués, Manuel Graña.<br />
: [[Media:iwinac2011_ion.pdf | "Experiments on Lattice Independent Component Analysis for Face Recognition."]]<br />
: Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br />
: Lecture Notes in Computer Science, 2011, Volume 6678, pp.286-294, DOI: [http://dx.doi.org/10.1007/978-3-642-21326-7_31 10.1007/978-3-642-21326-7].<br />
: J. Ferrández, J. Álvarez Sánchez, F. de la Paz and F. Toledo (eds)<br />
: ISBN 978-3-642-21325-0<br />
<br />
; Alexandre Savio, Manuel Graña, Jorge Villanúa<br />
: Deformation based features for Alzheimer's disease detection with linear SVM.; <br />
: Hybrid Artificial Intelligence Systems, 6th International Conference (HAIS 2011) - HAIS 2011, Part II, LNAI 6679 proceedings, p.336-343. Springer, Heidelberg (2011)<br />
<br />
; Miguel A. Veganzones, Manuel Graña.<br />
: [[Media:Whispers2011_veganzones.pdf | "On the validation of a spectral/spatial CBIR system for hyperspectral images."]]<br />
: Proceedings of the [http://www.ieee-whispers.com/ 3rd Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (IEEE-WHISPERS 2011)]. 2011.<br />
<br />
; Avid Román-González, Miguel A. Veganzones, Manuel Graña, Mihai Datcu. <br />
: [[Media:esa2011_roman-gonzalez_veganzones.pdf | "A novel data compression technique for remote sensing data mining."]]<br />
: Proceedings of the [http://rssportal.esa.int/tiki-index.php?page=2011_ESA-EUSC-JRC ESA-EUSC-JRC 2011].<br />
: P. Soille, L. Gueguen, S. D'ELia, P.G. Marchetti, L. Colaicomo, M. Datcu (eds) pp. 101-104<br />
: ISBN 978-92-79-19708-6<br />
<br />
; Miguel A. Veganzones, Manuel Graña<br />
: [[Media:esa2011_veganzones_grana.pdf | "Validation of remote sensing content-based information retrieval (RS-CBIR) systems upon scarce data."]]<br />
: Proceedings of the [http://rssportal.esa.int/tiki-index.php?page=2011_ESA-EUSC-JRC ESA-EUSC-JRC 2011].<br />
: P. Soille, L. Gueguen, S. D'ELia, P.G. Marchetti, L. Colaicomo, M. Datcu (eds) pp. 93-96<br />
: ISBN 978-92-79-19708-6<br />
<br />
; Miguel A. Veganzones, Manuel Graña<br />
: [[Media:SOCO2011-veganzones-camera_ready.pdf | "Validation of a Hyperspectral Content-Based Information Retrieval (RS-CBIR) System upon scarce data"]]<br />
: Proceedings of the [http://soco.usal.es/ International Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011)]<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications ([http://soco.usal.es/ SOCO 2011]), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57<br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
; Maite Termenon, Manuel Graña<br />
: Further results on Alzheimer Disease Detection on structural MRI features<br />
: Proceedings of the [http://soco.usal.es/ International Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011)]<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 515-522, DOI: 10.1007/978-3-642-19644-7_54 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
;Véronique Amarger, Dominik M. Ramík, Ramon Moreno, Lucile Rossi, Kurosh Madani, Manuel Graña<br />
:"Wildland Fires’ Outlines Extraction a Spherical Coordinates Framed RGB Color Space Dichromatic Reflection Model Based Image Segmentation Approach" . Minks, Belarus, 18-20 May 2011 [http://lsi.bas-net.by/conferences/prip2011/ PRIP'11] <br />
<br />
;Ramón Moreno, Manuel Graña, Dominik M. Ramík, Kurosh Madani<br />
:"Image Segmentation by Spherical Coordinates" . Minks, Belarus, 18-20 May 2011 [http://lsi.bas-net.by/conferences/prip2011/ PRIP'11] <br />
<br />
; Ramón Moreno, Manuel Graña, Alicia d'Anjou<br />
:"A Hybrid Color Distance for Image Segmentation".Part II, Hybrid Artificial Intelligence Systems LNAI 6679, pp. 447–454, 23-25 May 2011 [http://hais.pwr.wroc.pl/ HAIS'11] ISBN:978-3-642-21218-5<br />
<br />
; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br />
: "Empirical Study of Q-Learning Based Elemental Hose Transport Control".<br />
: Proceedings of the [http://hais.pwr.wroc.pl/ HAIS'11], Part II<br />
: Lecture Notes in Computer Science, 2011, Volume 6679/2011, 455-462, DOI: 10.1007/978-3-642-21222-2<br />
: Editors: Corchado, Emilio and Kurzynski, Marek and Wozniak, Michal<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-21218-5<br />
<br />
;Ramón Moreno, Manuel Graña, Alicia d'Anjou<br />
:"A geometrical method of diffuse and specular image components separation". Advances in Computational Intelligence,Lecture Notes in Computer Science, 2011, Volume 6692/2011, 83-89, Eds:J.Cabestani, I.Rojas and G.Goya. DOI: 10.1007/978-3-642-21498-1_11 ISBN:978-3-642-21497-4<br />
<br />
; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br />
: "Concurrent Modular Q-Learning with Local Rewards on Linked Multi-Component Robotic Systems"<br />
: Proceedings of the [http://www.iwinac.uned.es/iwinac2011/ IWINAC 2011], La Palma, Spain. May 30-June 3, 2011.<br />
: Lecture Notes in Computer Science, 2011, Volume 6686/2011, 148-155, DOI: 10.1007/978-3-642-21344-1_16 <br />
: Editors: José Manuel Ferrández, José Ramón Álvarez Sánchez, Félix de la Paz and F. Javier Toledo (eds)<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-21343-4<br />
<br />
; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br />
: "Towards concurrent Q-Learning on Linked Multi-Component Robotic Systems"<br />
: Proceedings of the [http://hais.pwr.wroc.pl/ HAIS'11], Part II<br />
: Lecture Notes in Computer Science, 2011, Volume 6679/2011, 463-470, DOI: 10.1007/978-3-642-21222-2_56<br />
: Editors: Corchado, Emilio and Kurzynski, Marek and Wozniak, Michal<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-21218-5<br />
<br />
==2010==<br />
<br />
;Moujahid, A.; d'Anjou, A.; Torrealdea, F.J.; Torrealdea, F.<br />
:Energetic considerations on the dynamics of Hodgkin-Huxley neurons<br />
:2010 Sixth International Conference on Natural Computation (ICNC 2010)<br />
:On page(s): 3156 - 3163<br />
:Location: Yantai, Shandong<br />
:ISBN: 978-1-4244-5958-2<br />
:INSPEC Accession Number: 11554266 <br />
<br />
; Ion Marques, Manuel Graña<br />
: Face processing for security: a short review<br />
: A. Herrero, E. Corchado, C. Redondo, A. Alonso (eds) Computational Intelligence in Security for Information Systems 2010, Adv. Int. and Soft Computing, vol. 85, Springer Verlag, 2010<br />
: pp. 89-96<br />
: ISBN 978-3-642-16625-9<br />
<br />
; Jose Manuel Lopez-Guede, Ekaitz Zulueta, Borja Fernández and Manuel Graña<br />
: Multi-Robot Systems Control Implementation<br />
: Suraiya Jabin (Ed.), Robot Learning, pp.137-150. Sciyo 2010.<br />
: ISBN 978-953-307-104-6<br />
<br />
; C. Hernandez, H. Viana, M.A. Veganzones, L. Nunes, M. Graña, D. Lopes<br />
: Biomass estimation: a case study in a forest area of northern Portugal<br />
: D. Lopes et al. (eds) Mixed and pure forest in a changing world, <br />
: Univ. of Tras-os-Montes e Alto DOuro, (2010) ISBN 978-972-669-980-4<br />
<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
: ISBN 978-3-642-13802-7<br />
<br />
;Ivan Villaverde, Borja Fernandez-Gauna and Ekaitz Zulueta<br />
:''Lattice Independent Component Analysis for mobile robot localization''<br />
:In E. Corchado et al. (Eds.), The 5th International Conference on Hybrid Artificial Intelligence Systems (HAIS 2010), Part II, LNAI vol. 6077, pp. 335-342. Springer, Heidelberg, 2010. (ISBN 978-3-642-13802-7). [http://dx.doi.org/10.1007/978-3-642-13803-4_42 DOI]<br />
<br />
;I. Macía, M. Graña, and C. Paloc<br />
:Towards a Proposal for a Vessel Knowledge Representation Model<br />
:R. Setchi et al. (Eds.): KNOWLEDGE-BASED AND INTELLIGENT INFORMATION AND ENGINEERING SYSTEMS KES 2010, Part IV, LNAI 6279, pp. 80--87. Springer Heidelberg (2010)<br />
: ISBN-13 978-3-642-15383-9 <br />
: [[media:Kes-2010-i-macia.pdf|slides]]<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers<br />
<br />
; Miguel A. Veganzones, Carmen Hernández<br />
:[[Media:Hais2010-veganzones.pdf | "On the use of a hybrid approach to contrast Endemember Induction Algorithms"]]<br />
: Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.69 - 76 Vol. 2<br />
: ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_30 <br />
<br />
; Ramón Moreno, J.M. López-Guede, Alicia d'Anjou<br />
: Hybrid Color Space Transformation to Visualize Color Constancy.<br />
: Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.241 - 247 Vol. 2<br />
: ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_30 <br />
<br />
; José Manuel López-Guede, Ekaitz Zulueta, Borja Fernández-Gauna<br />
: Neuronal Implementation of Predictive Controllers<br />
: Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer Verlag, 2010, pp.312 – 319 Vol. 2<br />
: ISBN 978-3-642-13802-7 : DOI: 10.1007/978-3-642-13803-4_39<br />
<br />
; Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Ekaitz Zulueta<br />
: Linked Multicomponent Robotic Systems: Basic Assessment of Linking Element Dynamical Effect <br />
: Hybrid Artificial Intelligent Systems, Part I, Manuel Grana Romay; Emilio S. Corchado Rodriguez; Maite Garcia-Sebastian (Eds.), (LNCS/LNAI) Vol. 6076, Springer Verlag, 2010, pp.73 – 79<br />
: ISBN 978-3-642-13768-6 : DOI: 10.1007/978-3-642-13769-3_9<br />
<br />
; Ramón Moreno, Manuel Graña, Alicia d'Anjou <br />
: A image color Gradient Preserving Color constancy<br />
: FUZZ-IEEE 2010, IEEE catalog Number: CFP10FUZ-DVD pp.710-714, Barcelona, Spain ([[media:Wcci2010ramon.pdf |Download slides]])<br />
: ISBN 978-1-4244-6920-8<br />
<br />
;Manuel Graña, Carmen Hernández, Alicia D’Anjou, and Blanca Cases<br />
:Percolating Swarm Dynamics, [http://www.youtube.com/watch?v=PKN-n9XuU3k]<br />
:N. García-Pedrajas, F. Herrera, C. Fyfe, J.M. Benitez, M. Ali (eds.) Trends in Applied Intelligent Systems: Proc. IEA/AIE 2010, Part III, LNAI 6098, pp. 538–545<br />
:ISBN 978-3642130328<br />
<br />
;Andoni Beristain Iraola, Manuel Graña Romay<br />
:Interactive Multimedia Tabletops (IMT) for Casual Users <br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 681-688<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
;R. Martínez, K. Lopez de Ipiña, E. Irigoyen, N. Asla, N. Garay, A. Ezeiza, I. Fajardo<br />
:Emotion Elicitation Oriented to the Development of a Human Emotion Management System for People with Intellectual Disabilities <br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 689-696<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
;N. Barroso, K. Lopez de Ipiña, A. Ezeiza<br />
:Acoustic Phonetic Decoding Oriented to MultilingualSpeech Recognition in the Basque Context <br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 697-704<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
;K. Lopez de Ipiña, M.C. Hernández, M. Graña, E. Martinez, C. Vaquero<br />
:A Computer-Aided Decision Support System for Shoulder Pain Pathology <br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 705-712<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
;A. Moujahid, A. D’Anjou, F.J. Torrealdea<br />
:Energy Cost Reduction in the Synchronization of a Pair of Nonidentical Coupled Hindmarsh-Rose Neurons <br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 657-664<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
;A. Conde, K. Lopez de Ipiña, M. Larrañaga, J.A. Elorriaga, J.M. Lopez, E. Irigoyen, N. Garay-Vitoria, A. Ezeiza, J. Rubio<br />
:An Intelligent Tutoring System Oriented to the Integration of People with Intellectual Disabilities<br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 639-647<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
; Ramón Moreno, Manuel Graña, Alicia d'Anjou<br />
: A color transformation for robust detection of color landmarks in robotic contexts<br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 665-672<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
;Ivan Villaverde, Zelmar Echegoyen, Ramon Moreno, Manuel Graña<br />
:Experiments on Robotic Multi-agent System for Hose Deployment and Transportation <br />
: in Trends in Practical Applications of Agents and Multiagent Systems, Yves Demazeau, Frank Dignum, Juan M. Corchado, Javier Bajo, Rafael Corchuelo, Emilio Corchado, Florentino Fernández-Riverola, Vicente J. Julián, Pawel Pawlewski, and Andrew Campbell (Eds.), Advances in Intelligent and Soft Computing, 71, Springer Verlag. pp. 573-580<br />
: ISBN 978-3-642-12432-7, DOI DOI 10.1007/978-3-642-12433-4<br />
<br />
; Manuel Graña, Blanca Cases, Carmen Hernandez, and Alicia D’Anjou<br />
:Further results on swarms solving Graph Coloring<br />
:D. Taniar, O. Gervasi, B. Murgante, E. Pardede, B.O. Apduhan (Eds.): Computational Science and it applications, Proc. ICCSA 2010, Part III, LNCS 6018, pp. 541--551. Springer, Heidelberg (2010)<br />
: ISBN 978-3-642-12178-4<br />
<br />
; Andoni Beristain, Manuel Graña<br />
: An stable skeletonization for tabletop gesture recognition<br />
:D. Taniar, O. Gervasi, B. Murgante, E. Pardede, B.O. Apduhan (Eds.): Computational Science and it applications, Proc. ICCSA 2010, Part I, LNCS 6016, pp. 610--621. Springer, Heidelberg (2010)<br />
:ISBN 978-3-642-12155-5<br />
<br />
==2009==<br />
<br />
;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou, Abdelmalik Moujahid<br />
:Computing the energy cost of the information transmitted by model biological neurons<br />
:AIP Conf. Proc., Volume 1148, Issue 1, August 13, 2009, Pages 250-253<br />
:ISBN: 978-0-7354-0685-8<br />
<br />
;Iñigo Barandiaran and Charlotte Cottez and Céline Paloc and Manuel Graña<br />
:Comparative Evaluation of Random Forest and Fern Classifiers for Real-Time Feature Matching<br />
:Selected Readings in computer graphics, pp. 418-427<br />
: Fraunhofer Institute for Computer Graphics Research<br />
<br />
;Jose Manuel Lopez-Guede, Manuel Graña, Ekaitz Zulueta, Oscar Barambones<br />
: Economical Implementation of Control Loops for Multi-Robot Systems <br />
: Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br />
:ISBN 978-3-642-02489-4.<br />
:pp.1053-1059<br />
<br />
;Zelmar Echegoyen, Alicia d’Anjou, Ivan Villaverde, Manuel Graña<br />
:Towards the adaptive control of a multirobot system for an elastic hose <br />
: Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br />
:ISBN 978-3-642-02489-4. <br />
:pp. 1045-1052<br />
<br />
;Ivan Villaverde, Zelmar Echegoyen and Manuel Graña<br />
:Neuro-Evolutive system for ego-motion estimation with a 3D camera. <br />
: Advances in Neuro-Information Processing, Proc. of 15th International Conference on Neural Information Processing of the Asia-Pacific Neural Network Assembly (ICONIP 2008). Mario Köppen, Nikola Kasabov, and George Coghill (Eds.), LNCS 5506, Springer Verlag, Heidelberg<br />
:ISBN 978-3-642-02489-4.<br />
:pp 1021-1028<br />
<br />
;Iván Macía Oliver, Jon Haitz Legarreta, Céline Paloc, Manuel Graña, Josu Maiora, Guillermo García<br />
:Segmentation of Abdominal Aortic Aneurysms in CT Images using a Radial Model Approach [[media:IMacia IDEAL2009 Segmentation of AAAs in CT Images.pdf|draft]]<br />
: Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br />
: IISBN 978-3-642-04393-2<br />
:ISSN 0302-9743<br />
:pp.664-671<br />
<br />
;Josu Maiora, Guillermo García, Arantxa Tapia, Ivan Macía, Jon Haitz Legarreta, Manuel, Graña<br />
:Stent Graft Change Detection after Endovascular Abdominal Aortic Aneurysm Repair. [[media:IDEAL-2009-Maiora.pdf|draft]]<br />
:Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br />
: IISBN 978-3-642-04393-2<br />
:ISSN 0302-9743<br />
:pp.656-663<br />
<br />
;Iñigo Barandiaran, Iván Macía, Eva Berckmann, Diana Wald, Michael Pierre Dupillier, Celine Paloc, and Manuel Graña<br />
:An automatic segmentation and reconstruction of mandibular structures from CT-data [[media:IDEAL-2009-V3(No Software)Barandiaran.pdf|draft]]<br />
: Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br />
: IISBN 978-3-642-04393-2<br />
:ISSN 0302-9743<br />
:pp.649-655<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Carmen Hernández, Manuel Graña, Jorge Villanúa, <br />
: Classification Results of Artificial Neural Networks for Alzheimer's Disease Detection [[media:GarciaSebastianSavio-VBM SPM ANN-IDEAL2009.pdf | draft]] [[media:Presentation GarciaSebastianSavio-VBM SPM SVM-2009.pdf | slides]]<br />
: Intelligent Data Engineering and Automated Learning- IDEAL 2009, Emilio Corchado, Hujun Yin (eds) LNCS 5788, Springer Verlag, <br />
: IISBN 978-3-642-04393-2<br />
:ISSN 0302-9743<br />
:pp.641-648<br />
<br />
; Blanca Cases, Abdelmalik Moujahid, Manuel Graña, Alicia d'Anjou<br />
:Chaotic patterns in crowd simulation<br />
: Proc ECAL 2009, pp ***<br />
: ISBN pending<br />
<br />
;Manuel Graña, Maite Garcia-Sebastián, Carmen Hernandez<br />
: Lattice Independent Component Analysis for fMRI analysis [[media:Grana-icann-2009.pdf|draft]] [[media:ICANN-2009-Grana.pdf|slides]]<br />
: M. Polycarpou, C. Panayiotou, C. Alippi, G. Ellinas (Eds.), Artificial Neural Networks - ICANN 2009, LNCS 5768, Springer Verlag, pp.725-734<br />
: ISBN 978-3-642-04276-8<br />
<br />
;Ramón Moreno, Manuel Graña, Alicia d'Anjou,Carmen Hernandez<br />
: Bayesian Reflectance Component Separation. [[media:KES2009-DRM.pdf|draft]]<br />
: Juan D. Velásquez, Sebastián A. Ríos, Robert J. Howlett, Lakhmi C. Jain (eds.), Knowledge-Based and Intelligent Information and Engineering Systems, Proceedings of 13th International Conference, KES 2009, Santiago, Chile, September 28-30, 2009, parte II, LNCS 5712, Springer Verlag, pp.846-852<br />
: ISBN 978-3-642-04591-2<br />
<br />
;Carlos Toro, Manuel Graña, Jorge Posada, Javier Vaquero, Cesar Sanin, Edward Szczerbicki<br />
: Domain modeling based on Engineering Standards. [[media:KES2009 ctoroV9.pdf|draft]]<br />
: Juan D. Velásquez, Sebastián A. Ríos, Robert J. Howlett, Lakhmi C. Jain (eds.), Knowledge-Based and Intelligent Information and Engineering Systems, Proceedings of 13th International Conference, KES 2009, Santiago, Chile, September 28-30, 2009, parte I, LNCS 5711, Springer Verlag, pp.95-102<br />
: ISBN 978-3-642-04594-3<br />
<br />
;Ivan Villaverde, Manuel Graña<br />
:An Improved Evolutionary Approach for Egomotion Estimation with a 3D TOF Camera<br />
: J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 390-398<br />
: ISBN 978-3-642-02266-1<br />
<br />
; Zelmar Echegoyen, Alicia d'Anjou, Manuel Graña<br />
: On the control of a multi-robot system for the manipulation of an elastic hose<br />
: J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 382-389<br />
: ISBN 978-3-642-02266-1<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Manuel Graña, Jorge Villanúa<br />
: Results of an Adaboost approach on Alzheimer's Disease detection on MRI [[media:Presentation GarciaSebastianSavio-VBM SPM SVM-2009.pdf|slides]]<br />
: J. Mira, J. M. Ferrández, J.R. Alvarez, F. dela Paz, F.J. Tolede (Eds.) Bioinspired applications in Artificial and Natural Computation, Proc. IWINAC 2009, Part II, LNCS 5602, Springer Verlag, pp: 114-123<br />
: ISBN 978-3-642-02266-1<br />
<br />
; Carlos Toro, Manuel Graña, Jorge Posada<br />
:An architecture for the Semantic Enhancement of Virtual Engineering Applications<br />
:Intelligent Systems for Knowledge Management, <br />
: Ngoc Thanh Nguyen and Edward Szczerbicki (Editors), pp.175-196, Springer Verlag 2009<br />
: ISBN 978-3-642-04169-3<br />
<br />
; Maite García-Sebastián, Alexandre Savio, Manuel Graña, Jorge Villanúa<br />
:On the Use of Morphometry Based Features for Alzheimer's Disease Detection on MRI. [http://www.springerlink.com/content/p101v5833k55512g/?p=d18ee031594e45ff9562cd2b97980b2c&pi=119]<br />
:Bio-Inspired Systems: Computational and Ambient Intelligence. / IWANN 2009 (Part I)<br />
: Joan Cabestany, Francisco Sandoval, Alberto Prieto, Juan M. Corchado (Editors), LNCS 5517, Springer Verlag 2009, pp. 957-964<br />
: ISBN 978-3-642-02477-1<br />
<br />
;Manuel Graña, Iván Villaverde, Jose Manuel López Guede, Borja Fernández<br />
:Review of Hybridizations of Kalman Filters with Fuzzy and Neural Computing for Mobile Robot Navigation [[media:HAIS-2009-grana-kalman-draft.pdf|draft]] [[media:HAIS-2009-kalman-presentacion.pdf|slides]]<br />
: 4th International Conference on Hybrid Artificial Intelligent Systems (HAIS09)<br />
: E. Corchado, X. Wu, E. Oja, A. Herrero, B. Baruque (eds), Springer Verlad 2009, LNAI 5572, pp. 121-128<br />
: ISBN 978-3-642-02318-7<br />
<br />
==2008==<br />
<br />
;E. Irigoyen, K. L. de Ipiña, N. Garay, I. Fajardo, A. Goicoechea, A. Ezeiza, M. Peñagarikano, G. Bordel, A. Conde, M. Larrañaga, A. Arruti, L.J. Rodríguez, J.M. López, E. Zulueta, M. Graña, J. Rubio <br />
:A ROBUST INTELLIGENT SYSTEM FOR INTERACTING WITH PEOPLE WITH COGNITIVE DISABILITIES <br />
: INTED2008 Proceedings<br />
:L. Gómez Chova, D. Martí Belenguer, I. Candel Torres (eds)<br />
:International Association of Technology, Education and Development , IATED, Valencia <br />
:ISBN: 978-84-612-0190-7 <br />
<br />
;B. Cases, C. Hernandez, M. Graña, A. d'Anjou.<br />
:On the ability of Swarms to compute the 3-coloring of graphs.<br />
:In S. Bullock, J. Noble, R. Watson, M.A. Bedau (Eds.), Proceedings of the Eleventh International Conference on the Simulation and Synthesis of Living Systems, pp. 102-109, MIT Press, 2008<br />
: ISBN 978-0-262-75017-2, <br />
<br />
;Ivan Villaverde and Manuel Graña, <br />
: A Hybrid Intelligent System for Robot Ego Motion Estimation with a 3D Camera<br />
: Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds), LNAI 5271, Springer Verlag pp: 657-664<br />
: ISBN 978-3-540-87655-7<br />
<br />
; Ramón Moreno, Alicia d’Anjou and Manuel Graña, <br />
:Evolutive Parametric Approach for Specular Correction in the Dichromatic Reflection Model<br />
: Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 665-672<br />
: ISBN 978-3-540-87655-7<br />
<br />
; José Manuel López-Guede, Manuel Graña and Ekaitz Zulueta, <br />
: On Distributed Cooperative Control for the Manipulation of a Hose by a Multirobot System<br />
: Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 673-679<br />
: ISBN 978-3-540-87655-7<br />
<br />
;R.J. Duro, M. Graña and J. de Lope, <br />
:On the need of Hybrid Intelligent Systems in Modular and Multi Robotics<br />
: Hybrid Artificial Intelligence Systems, Emilio Corchado, Ajith Abraham, Witold Pedrycz (eds) LNAI 5271, Springer Verlag pp: 641-648<br />
: ISBN 978-3-540-87655-7<br />
<br />
; Manuel Graña, Maite García-Sebastián, Ivan Villaverde, Elsa Fernandez<br />
: An approach from Lattice Computing to fMRI analysis [[Media:Proceedings-cla2008-workshop.pdf|pdf]]<br />
: LBM 2008 (CLA 2008), Proceedings of the Lattice-Based Modeling Workshop, Vassilis Kaburlasos, Uta Priss, Manuel Graña (eds), pp:33-44<br />
: ISBN 978–80–244–2112–4<br />
<br />
; Miguel Angel Veganzones, Manuel Graña<br />
: Endmember extraction methods: a short review<br />
: I. Lovrek, R.J. Howlett, L.C. Jain (Eds.): KES 2008, Part III, LNAI 5179, pp:400-407; Springer-Verlag Berlin Heidelberg. 2008.<br />
: ISBN 978-3-540-85566-8<br />
<br />
;M. Graña. <br />
:A Brief Review of Lattice Computing [[media:WWCI-2008-lattice-computing-review-draft.pdf|draft]]<br />
:Proceedings FUZZ-IEEE 2008, pp.1777-1781<br />
:ISBN 978-1-4244-1819-0<br />
<br />
;Maite García-Sebastián, A. M. Savio, M. Graña. <br />
:Comments on an Evolutionary Intensity Inhomogeneity Correction Algorithm <br />
: Proceedings CEC 2008, pp.4146-4150<br />
:ISBN 978-1-4244-1822-0<br />
<br />
;Diego Sal, Manuel Graña<br />
:''A Multiobjective Evolutionary Algorithm for Hyperspectral Image Watermarking''<br />
: Computational Intelligence for Remote Sensing, Manuel Graña, Richard Duro (eds), Springer Verlag, Studies in Computational Intelligence series, pp.49-60<br />
: ISBN 978-3-540-79352-6<br />
<br />
; Miguel Angel Veganzones, José Orlando Maldonado, Manuel Graña<br />
:''On Content-Based Image Retrieval Systems For Hyperspectral Remote Sensing Images''<br />
: Computational Intelligence for Remote Sensing, Manuel Graña, Richard Duro (eds), Springer Verlag, Studies in Computational Intelligence series, pp.97-111<br />
: ISBN 978-3-540-79352-6<br />
<br />
==2007==<br />
<br />
; M. Graña<br />
:''State of the art in lattice computing for artificial intelligence applications''<br />
: Mathematical and Computational Models, R. Nadarajan R. Anitha, C. Porkodi (eds), pp. 233--242<br />
: New Delhi, India:Narosa Publishing House <br />
:ISBN 978-81-7319-882-3<br />
<br />
;I. Villaverde, M. Graña, A. d'Anjou<br />
:''Morphological Independence for Landmark Detection in Vision Based SLAM''<br />
:Computational and ambient intelligence, F. Sandoval, A. Prieto, J. Cabestany, M. Graña (eds), LNCS 4507, Springer Verlag, Heidelberg, pp. 837-844<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004, 2005: 0.513, 0.402<br />
:ISBN 3-540-73006-0<br />
:ISSN 0302-9743<br />
<br />
;Maite García-Sebastián, Ana I. Gonzalez, Manuel Graña<br />
:''Derivation of SOM-like rules for intensity inhomogeneity correction in MRI''<br />
:Computational and ambient intelligence (IWANN), F. Sandoval, A. Prieto, J. Cabestany, M. Graña (eds) LNCS 4507, Springer Verlag, Heidelberg, pp. 669-676, 2007.<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004, 2005: 0.513, 0.402<br />
:ISBN 3-540-73006-0<br />
:ISSN 0302-9743<br />
<br />
;Manuel Graña, Ivan Villaverde, Ramon Moreno, Francisco X. Albizuri<br />
:''Convex coordinates from lattice independent sets for visual pattern recognition''<br />
:Computational Intelligence Based on Lattice Theory, G. Ritter, V. Kaburlasos (eds), Springer Verlag, pp: 99-126<br />
:ISBN 978-3-540-72686-9<br />
<br />
;Zelmar Echegoyen, Alicia d'Anjou, Manuel Graña<br />
:''Modeling a Legged Robot for Visual Servoing'' [[media:Presentacion-ICCSA-2007-zelmar.pdf|slides]] [[media:Iccsa-2007-aibo-zelmar.pdf|draft]]<br />
:Computational Science and Its Applications -- ICCSA 2007, Osvaldo Gervasi and Marina L. Gavrilova (eds) LNCS 4707, Springer Verlag, pp: 798-810<br />
:ISBN 978-3-540-74482-5<br />
<br />
;Maite García-Sebastián, Manuel Graña<br />
:''SOM for intensity inhomogeneity correction in MRI''<br />
:ESANN 2007, M. Verleysen (ed), D-side Publications, pp: 109-114<br />
:ISBN 2-930307-07-2<br />
<br />
;Ramon Moreno, Manuel Grana Romay, Miguel Angel Veganzones<br />
:''A Remote Mycological Assistant''<br />
:IDAACS'2007, Anatoly Sachenko, Peter J. A. Reusch, Richard Duro, Wieslaw Winiecki (eds), IEEE Press, pp. 408-412<br />
:ISBN 1-4244-1348-6<br />
<br />
;I. Villaverde, M. Graña, J.L. Jimenez<br />
:''Lattice Independence and Vision Based Mobile Robot Navigation''<br />
:Knowledge-Based Intelligent Information and Engineering Systems, KES 2007, Bruno Apolloni, Robert J. Howlett, and Lakhmi Jain (Eds.) LNAI 4693, Springer Verlag, pp: 1196-1203<br />
:ISBN 978-3-540-74826-7<br />
<br />
;Zelmar Echegoyen, Alicia d’Anjou, Manuel Graña <br />
:''Contribution to legged robot visual servoing''<br />
:Knowledge-Based Intelligent Information and Engineering Systems, KES 2007, Bruno Apolloni, Robert J. Howlett, and Lakhmi Jain (Eds.) LNAI 4693, Springer Verlag, pp: 1179-1186<br />
:ISBN 978-3-540-74826-7<br />
<br />
;I. Cearreta, J.M. López, K. López de Ipiña, M. Hernandez, N. Garay, M. Graña, A. Álvarez<br />
:''Affective Computing as a component of Ambient Intelligence''<br />
:INFORMATION SCIENCES 2007, Proceedings of the 10th Joint Conference, Paul Yingjun Cao, Hengda Cheng, Donald Hung, Cengiz Kahraman, Chung Wha Ngo, Yukio Ohsawa, Manuel Grana Romay, Mu Chun Su, Athanasios Vasilakos, Douglas Wang, Paul P. Wang (eds), Singapore: World Scientific, pp: 1580-1586<br />
:ISBN 978-981-270-967-7<br />
<br />
;M. Graña, J.L. Jimenez, C. Hernandez<br />
:''Lattice Independence, Autoassociative Morphological Memories and unsupervised segmentation of Hyperspectral Images''<br />
:INFORMATION SCIENCES 2007, Proceedings of the 10th Joint Conference, Paul Yingjun Cao, Hengda Cheng, Donald Hung, Cengiz Kahraman, Chung Wha Ngo, Yukio Ohsawa, Manuel Grana Romay, Mu Chun Su, Athanasios Vasilakos, Douglas Wang, Paul P. Wang (eds), Singapore: World Scientific, pp: 1624-1631<br />
:ISBN 978-981-270-967-7<br />
<br />
;Jose Orlando Maldonado, David Vicente Herrera, Manuel Graña Romay<br />
:''Visual texture characterization of recycled paper quality''<br />
:Innovations in Hybrid Intellligent Systems, Advances in Soft Computing Vol. 44, Springer Verlag, pp: 288-295<br />
:ISBN 978-3-540-74971-4<br />
<br />
; Israel Rebollo, Manuel Graña<br />
: Gestión Multiagente de Almacenes Usando RFID<br />
: 1 jornadas científicas sobre RFID, A. García, J. Bravo, R. Hervás, J.C. Encinas, Gabriel Chavira, Salvador W. Nava, J. M. Pastor, P. García, J. G.Escribano (EDS), pp. 7--12<br />
:ISBN 978-84-612-0542-4<br />
<br />
==2006==<br />
<br />
;Ana I. González, Alicia D’Anjou, Maite García-Sebastián, Manuel Graña <br />
:''SOM and Neural Gas as Graduated Nonconvexity Algorithms''<br />
:The 2006 International Conference on Computational Science and its Applications -- ICCSA 2006, M. Gavrilova et al.(Eds.) LNCS 3982, Springer Verlag, Berlin Heidelberg, ICCSA 2006, part III, pp. 1143-1152. JCR(2005) 0.402.<br />
:ISBN 3-540-34075-0<br />
<br />
;C.Hernández, J. Gallego, Maite García-Sebastián, Manuel Graña Romay<br />
:''On Clustering Performance Indices for Multispectral Image''<br />
:Knowledge-Based Intelligent Information and Engineering Systems, 10 International Conf. -- KES 2006, B. Gabrys, R. J. Howlett and L. C. Jain (Eds.) LNCS 4253, Springer Verlag, Berlin, KES 2006, Part III, pp. 277-283. JCR(2005) 0.402.<br />
:ISBN 978-3-540-46542-3<br />
<br />
;José Orlando Maldonado, David Vicente, Miguel Angel Veganzones, Manuel Graña<br />
:[[Media:Jic07-maldonado.pdf | "Spectral indexing for Hyperspectral image CBIR"]]<br />
:ESA-EUSC 2006 Image Information Mining for Security and Intelligence Proceedings (WPP-274).<br />
<br />
==2005==<br />
<br />
;Maite García-Sebastián, E.Fernandez, M. Graña, F.J. Torrealdea <br />
:''A gradient descent MRI illumination correction algorithm''<br />
:Computational Intelligence an Bioinspired Systems -- IWANN 2005, F. Sandoval, A. Prieto, J. Cabestany (eds) LNCS 3512, Springer Verlag, Berlin, vol. 3512, pp. 913-920. JCR(2005) 0.402.<br />
:ISBN 3-540-26208-3</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18143
Usuario:Daria.chizhik
2015-09-23T10:32:45Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease [[media: 00450034.pdf|pdf]]<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Archivo:00450034.pdf&diff=18141
Archivo:00450034.pdf
2015-09-23T10:30:56Z
<p>Chyzhyk.darya: Chyzhyk-InMed2015</p>
<hr />
<div>Chyzhyk-InMed2015</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18139
Usuario:Daria.chizhik
2015-09-23T10:28:01Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña-Lecuona and Manuel Graña<br />
: Late Onset Bipolar Disorder Versus Alzheimer Disease<br />
: Innovation in Medicine and Healthcare 2015, Smart Innovation, Systems and Technologies 45: 337-384, Springer International Publishing Switzerland 2016, Y.-W. Chen et al. (eds.), DOI 10.1007/978-3-319-23024-5_34, InMed 2015, Kyoto, Japan, 11-12 September 2015, ISSN 2190-3018 ISSN 2190-3026 (electronic), Smart Innovation, Systems and Technologies, ISBN 978-3-319-23023-8 ISBN 978-3-319-23024-5 (eBook)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18137
Usuario:Daria.chizhik
2015-09-22T20:59:33Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Marina Graña, Manuel Graña<br />
: A<br />
: InMed 2015<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18135
Usuario:Daria.chizhik
2015-09-22T20:58:51Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;<br />
:<br />
: InMed 2015<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18133
Usuario:Daria.chizhik
2015-09-22T19:59:05Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Image Understanding Applications of Lattice Autoassociative Memories<br />
: IEEE transactions on neural networks and learning systems, 2015 (8):. JCR (2014) 4.291 ISSN: 2162-237X<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18131
Usuario:Daria.chizhik
2015-09-22T19:52:08Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (2015)68:23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2014) 2.708 ,(2013) 2.076 (Q1 CSAI, Q3 Neurosciences), ISSN: 0893-6080<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056, (2015) 6.507 (Q1 CSAI), Print ISSN: 0129-0657, Online ISSN: 1793-6462 <br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2014 2.083, 2013 2.005 (Q1 CSAI), ISSN 0925-2312<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=18129
Usuario:Daria.chizhik
2015-09-22T15:42:07Z
<p>Chyzhyk.darya: </p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzheimer Research, (accepted). JCR (2014) 3.889 (Q1 Clin Neurol, Q2 Neurosciences), ISSN: 1875-5828 (Online), ISSN: 1567-2050 (Print)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks Neural Networks (2015), pp. 23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2013) 2.076 (Q1 CSAI, Q3 Neurosciences)<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056 (Q1 CSAI)<br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17946
Usuario:Daria.chizhik
2015-07-11T21:04:45Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzherimer Research, (accepted). JCR (2013) 3.796 (Q1 Clin Neurol, Q2 Neurosciences)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks Neural Networks (2015), pp. 23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2013) 2.076 (Q1 CSAI, Q3 Neurosciences)<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056 (Q1 CSAI)<br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, Artificial Computation in Biology and Medicine Lecture Notes in Computer Science Volume 9107, 2015, pp 185-194. IWINAC 2015, Elche, 1-5 Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Revistas&diff=17780
Revistas
2015-05-14T19:53:19Z
<p>Chyzhyk.darya: </p>
<hr />
<div>[[media:Revistas-GIC-1984-2009.bib.zip|bib de revistas hasta 2009]]<br />
==submitidos sin decision==<br />
<br />
; Ion Marques, Manuel Graña, and Miguel Velez-Reyes<br />
:Towards human skin detection via hyperspectral image unmixing<br />
: GRSL<br />
: JCR (2013) 1.809 (Q2 EEE, Q2 GEOCHEMISTRY & GEOPHYSICS, Q2 ISPT, Q2 remote sensing)<br />
<br />
; Dacosta-Aguayo R, Graña M, Falcón C, Fernández-Andújar M, López-Cancio E, Cáceres C, Bargalló N, Barrios M, Clemente IC, Torán Pera, Forés Rosa, Dávalos A, Tibor A and Mataró M<br />
:Multimodal imaging of the healthy contralesional hemisphere provides insight into neural, functional and cognitive recovery in ischemic stroke patients<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br />
:Further Results Learning Hose Transport Control with Q-learning<br />
: Journal of Physical Agents (aceptado con revisiones)<br />
<br />
; Borja Ayerdi, Manuel Grana<br />
: Adaptive Hybrid Extreme Rotation Forest<br />
: Neural Processing Letters<br />
: JCR 2013 1.237 (Q2 CSAI)<br />
<br />
; Borja Ayerdi, Bartosz Krawczyk, Manuel Graña, Michal Wozniak<br />
: Combining One-Class Classifiers for Hyperspectral Image Segmentation<br />
: Fundamenta Informaticae<br />
<br />
==aceptados ==<br />
<br />
;Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzherimer Research, (accepted)<br />
: JCR (2013) 3.796 (Q1 Clin Neurol, Q2 Neurosciences)<br />
<br />
;Borja Fernandez-Gauna; Ismael Etxeberria-Agiriano; Manuel Graña<br />
:Learning Multirobot Hose Transportation and Deployment by Distributed Round-Robin Q-Learning<br />
: PlosOne (aceptado 18 de marzo)<br />
: JCR (2012) 3.730, (Q1 mult. sciences) (2013) 3.534 (Q1 mult. sci.)<br />
<br />
;Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br />
:Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification<br />
:Neurocomputing (aceptado 6 de marzo)<br />
<br />
; Borja Ayerdi, Manuel Graña<br />
: Hyperspectral Image Nonlinear Unmixing and Reconstruction by ELM Regression Ensemble<br />
: Neurocomputing<br />
<br />
;I. Macía, M. de Blas, J.H. Legarreta, L. Kabongo, O. Hernández, J.M. Egaña, J.I. Emparanza, A. García-Familiar, M. Graña<br />
:Standard and Fenestrated Endograft Sizing in EVAR Planning: Description and Validation of a Semi-automated 3D Software<br />
: Computerized Medical Imaging and Graphics [http://www.journals.elsevier.com/computerized-medical-imaging-and-graphics/] (accept 16 enero 2015)<br />
: JC· 2013 1.496 (Q3 RNMMI)<br />
<br />
<br />
<br />
;Fernández-Andújar M, Doornink F, Dacosta-Aguayo R, Soriano-Raya JJ, Miralbell J, Bargalló N, López-Cancio E, Pérez de la Ossa N, Gomis M, Millán M, ;Barrios M, Cáceres C, Clemente I, Dávalos A, Mataró M <br />
: Remote thalamic microstructural abnormalities related to cognitive function in ischemic stroke patients <br />
: Neuropsychology (aceptado 4 de abril 2014)<br />
: JCR (2012): 3.477 (Q1)<br />
<br />
;Maria Mataró, Juan José Soriano-Raya, Jorge López-Olóriz, Júlia Miralbell, Rosalia Dacosta-Aguayo<br />
:CEREBROVASCULAR MARKERS IN LOWERED COGNITIVE FUNCTION<br />
:Journal of Alzheimer Disease, (accepted)<br />
:JCR (2013) 3.612 (Q1 clinical neu.)<br />
<br />
== online first==<br />
<br />
;J. David Nuñez-Gonzalez, Manuel Graña, Bruno Apolloni, <br />
:Reputation Features for Trust Prediction in Social Networks, <br />
:Neurocomputing [http://www.sciencedirect.com/science/article/pii/S0925231215005494]<br />
: DOI 10.1016/j.neucom.2014.10.099<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Ion Marques, Manuel Graña, Anna Kamińska-Chuchmała, Bruno Apolloni, <br />
:An experiment of subconscious intelligent social computing on household appliances, <br />
:Neurcomputing (aceptado agosto 2014)<br />
: DOI 10.1016/j.neucom.2014.08.103<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Alexandre Savio, Manuel Graña<br />
:Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI<br />
:Neurocomputing (aceptado 10 enero 2015) [http://authors.elsevier.com/sd/article/S0925231215002970]<br />
: DOI 10.1016/j.neucom.2015.01.079<br />
<br />
;Lopez-Guede, Jose M.; Fernandez-Gauna, Borja; Graña, Manuel; Zulueta, Ekaitz; <br />
:Training Multi-agent systems by Q-learning: approaches and empirical results<br />
: Computational Intelligence [http://onlinelibrary.wiley.com/doi/10.1111/coin.12035/abstract]<br />
: DOI: 10.1111/coin.12035<br />
: JCR (2012) 1.000 (Q3 CSAI) (2013) 0.870<br />
<br />
;PAWEL KSIENIEWICZ, DARIUSZ JANKOWSKI, BORJA AYERDI, KONRAD JACKOWSKI, MICHAL WOZNIAK, MANUEL GRANA<br />
:A Novel Hyperspectral Segmentation Algorithm - Concept and Evaluation<br />
: Logic journal IGPL (aceptado noviembre 2014) [http://jigpal.oxfordjournals.org/content/early/2014/12/29/jigpal.jzu045.short]<br />
: JCR 2013 0.530 (Q2 Logic, Q3 Mathematics, Q4 MA)<br />
<br />
;Borja Fernandez-Gauna; Jose Manuel Lopez-Guede; Ismael Etxeberria-Agiriano; Igor Ansoategi; Manuel Graña<br />
:Reinforcement Learning endowed with safe veto policies to learn the control of L-MCRS<br />
:Information Sciences [http://www.sciencedirect.com/science/article/pii/S002002551500273X]<br />
: DOI 10.1016/j.ins.2015.04.005<br />
<br />
==2015==<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks Neural Networks (2015), pp. 23-33. DOI information: 10.1016/j.neunet.2015.04.002 <br />
: JCR (2013) 2.076 (Q1 CSAI, Q3 Neurosciences)<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International Journal of Neural Systems 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] [http://www.worldscientific.com/doi/abs/10.1142/S0129065715500070?src=recsys&journalCode=ijns&]<br />
: JCR 2014 6.056 (Q1 CSAI)<br />
<br />
;A. Suberbiola, E. Zulueta, J.M. Lopez-Guede, I. Etxeberria-Agiriano, and M. Graña<br />
: Arm Orthosis/Prosthesis Movement Control Based on Surface EMG Signal<br />
: International Journal of Neural Systems 25(3):1550009 [http://www.worldscientific.com/doi/10.1142/S0129065715500094] (2015)<br />
: JCR 2014 6.056 (Q1 CSAI)<br />
<br />
; MANUEL GRAÑA, J. DAVID NUÑEZ-GONZALEZ, LEIRE OZAETA, ANNA KAMIŃSKA-CHUCHMAŁA<br />
:Experiments of Trust Prediction in Social Networks by Artificial Neural Networks [http://www.tandfonline.com/doi/full/10.1080/01969722.2015.1007725#.VRJqFkvXmlI]<br />
: Cybernetics and Systems Volume 46, Issue 1-2, 2015 pages 19-34<br />
: DOI:10.1080/01969722.2015.1007725<br />
<br />
; EIDER SANCHEZ, CARLOS TORO, MANUEL GRAÑA, CESAR SANIN, EDWARD SZCZERBICKI<br />
:Extended Reflexive Ontologies for the generation of clinical recommendations [http://www.tandfonline.com/doi/full/10.1080/01969722.2015.1007723#abstract]<br />
: Cyberntetics and Systems Volume 46, Issue 1-2, 2015 pages 4-18<br />
<br />
<br />
<br />
;Julián Estévez, Jose Manuel Lopez-Guede, Manuel Graña<br />
: Quasi-stationary State Transportation of a Hose with Quadrotors<br />
: Robotics and Automous Systems (aceptado 5 sept) Volume 63, Part 2, January 2015, Pages 187–194 [http://www.sciencedirect.com/science/article/pii/S0921889014001791]<br />
: JCR (2013) 1.105, (Q3 Robotics, Q3 CSAI, Q3 ACS)<br />
<br />
<br />
;M Graña, B Raducanu<br />
:Bioinspired and knowledge based techniques and applications<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 1–3<br />
:DOI 10.1016/j.neucom.2014.09.039<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Darya Chyzhyk, Manuel Graña<br />
:Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160<br />
: DOI 10.1016/j.neucom.2014.09.075<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña<br />
:An active learning approach for Stroke lesion segmentation on multimodal MRI data<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 26–36 [http://www.sciencedirect.com/science/article/pii/S0925231214012466]<br />
:DOI:10.1016/j.neucom.2014.01.077<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Borja Ayerdi, Ion Marqués, Manuel Graña<br />
:Spatially regularized semisupervised Ensembles of Extreme Learning Machines for hyperspectral image segmentation<br />
: Neurocomputing (aceptado 18 de enero 2014) Volume 149, Part A, 3 February 2015, Pages 373–386 [http://www.sciencedirect.com/science/article/pii/S0925231214011424] <br />
: JCR 2013 2.005 (Q1 CSAI)<br />
: DOI 10.1016/j.neucom.2014.01.068<br />
<br />
<br />
; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna,Jose Antonio Ramos-Hernanz<br />
:Single robot dynamics approximation by ELM for Reinforcement Learning for hose control<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 116–123<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br />
:A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data [http://www.sciencedirect.com/science/article/pii/S0925231214012454]<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 37–42<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Dacosta-Aguayo, Rosalia; Graña, Manuel; Iturria-Medina, Yasser; Fernández-Andújar, Marina; López-Cancio, Elena; Caceres, Cynthia; Bargallo, Nuria; Barrios, Maite; Clemente, Imma; Pera, Guillem; Fores, Rosa; Davalos, Antoni; Mataro, Maria<br />
:Impairment of Functional Integration of the Default Mode Network correlates with Cognitive Outcome at three months after Stroke<br />
: Human Brain Mapping Volume 36, Issue 2, February 2015, Pages: 577–590<br />
: DOI: 10.1002/hbm.22648<br />
: Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine & Medical Imaging); 23/252 (Neurosciences) (2013) 6.924 (Q1 Neuroimaging, Q1 RNMMI, Q1 Neurosciences)<br />
<br />
== 2014 ==<br />
<br />
;Eider Sanchez, Peng Wang, Carlos Toro, Cesar Sanin, Manuel Graña, Edward Szczerbicki, Eduardo Carrasco, Frank Guijarro and Luis Brualla<br />
:Decisional DNA for modeling and reuse of experiential-based clinical assessments in breast cancer diagnosis and treatment<br />
: Neurocomputing Volume 146, 25 December 2014, Pages 308–318 [http://www.sciencedirect.com/science/article/pii/S0925231214007826]<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Jose Manuel Lopez-Guede, Manuel Graña, Jesus Maria Larrañaga, Fernando Oterino<br />
: Educational innovation project in the field of Industrial Informatics <br />
: Procedia - Social and Behavioral Sciences, Volume 141, 25 August 2014, Pages 20–24<br />
: DOI 10.1016/j.sbspro.2014.05.006<br />
<br />
; Jose Manuel Lopez-Guede, Manuel Graña, Jesus Maria Larrañaga, Fernando Oterino<br />
: Retrospective Vision of a Long Term Innovative Experience<br />
: Procedia - Social and Behavioral Sciences, Volume 141, 25 August 2014, Pages 15–19<br />
: DOI 10.1016/j.sbspro.2014.05.005<br />
<br />
;Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró <br />
:Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study<br />
: Human Brain Mapping (aceptado 15 nov 2013) Volume 35, Issue 8, pages 3819–3831, August 2014 [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br />
: Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine & Medical Imaging); 23/252 (Neurosciences) (2013) 6.924 (Q1 Neuroimaging, Q1 RNMMI, Q1 Neurosciences)<br />
<br />
;Borja Fernández-Gauna; Igor Ansoategui; Ismael Etxeberria-Agiriano; Manuel Graña<br />
:Reinforcement Learning of ball screw feed drive controllers<br />
:Engineering Applications of Artificial Intelligence Volume 30, April 2014, Pages 107–117 [http://www.sciencedirect.com/science/article/pii/S0952197614000220]<br />
: JCR (2011) 1.665 (Q1 ENG) (2012) 1.625 (Q1 ENG, Q2 ACS, Q2 CSAI, Q2 EEE) (2013) 1.962 (Q1 ENG, Q2 ACS, Q2 CSAI, Q2 EEE)<br />
<br />
;Borja Ayerdi and Manuel Graña<br />
:Hybrid Extreme Rotation Forest <br />
: Neural Networks Volume 52, April 2014, Pages 33–42 [http://www.sciencedirect.com/science/article/pii/S0893608014000045]<br />
: JCR (2012) 1.927 (Q1 CSAI, Q3 NS) (2013) 2.076 (Q1 CSAI, Q3 NS)<br />
<br />
;Tuia, D. ; Merenyi, E. ; Jia, X. ; Grana-Romay, M.<br />
:Foreword to the Special Issue on Machine Learning for Remote Sensing Data Processing [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6804709]<br />
: Selected Topics in Applied Earth Observations and Remote Sensing, IEEE Journal of (Volume:7 , Issue: 4 ) pp. 1007 - 1011<br />
: JCR (2012) 2.874 (Q2 GP, Q1 ISPT, Q1 RS) (2013) 2.827 (Q2 GP, Q1 ISPT, Q1 RS, Q1 EEE)<br />
<br />
; Abdelmalik Moujahid, Alicia d'ANjou, Manuel Graña<br />
:Energy demands of diverse spiking cells from the neocortex, hippocampus and thalamus<br />
: Frontiers in Computational Neuroscience (2014) 8:41 [http://journal.frontiersin.org/Journal/10.3389/fncom.2014.00041/abstract]<br />
: DOI: 10.3389/fncom.2014.00041<br />
: JCR (2013) 2.233 (Q1 MCB, Q2 neurosciences)<br />
<br />
;Iker Mesa, Eider Sanchez, Carlos Toro, Javier Diaz, Arkaitz Artetxe, Manuel Graña, Frank Guijarro, Cesar Martinez, Jose Manuel Jimenez, Shabs Rajasekharan, Jose Antonio Alarcon, Alessandro De Mauro.<br />
:Design and Development of a Mobile Cardiac Rehabilitation System<br />
:Cybernetics and Systems: An International Journal, Volume 45 Issue 2 (2014), pp 92-108 [http://www.tandfonline.com/doi/full/10.1080/01969722.2014.874804#.UyF23OCEl48]<br />
:JCR (2012): 0.973 (Q3 CSC)<br />
<br />
;Israel Rebollo-Ruiz and Manuel Graña<br />
:An empirical evaluation of Gravitational Swarm Intelligence for Graph Coloring algorithm<br />
: Neurocomputing Volume 132, 20 May 2014, Pages 79–84 [http://www.sciencedirect.com/science/article/pii/S0925231213011041]<br />
: JCR (2011) 1.580 (Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Rosalia Dacosta-Aguayo; Manuel Graña; Marina Fernandez-Andujar; Elena López-Cancio; Cynthia Cáceres; Nuria Bargallo; Maite Barrios; Imma Clemente; Antoni Dávalos; Auer Tibor; Maria Mataró<br />
:Structural integrity of the contralesional hemisphere predicts cognitive impairment in ischemic stroke at three months<br />
: PLosONe January 2014 | Volume 9 | Issue 1 | e86119 [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0086119]<br />
: JCR (2012) 3.730, (Q1 mult. sciences) (2013) 3.534 (Q1 mult. sci.)<br />
<br />
; Ramon Moreno, Francesco Corona, Amaury Lendasse, Manuel Grana and Lenio Galvao<br />
: Extreme Learning Machines for Soybean classification in remote sensing Hyperspectral Images<br />
: Neurocomputing Volume 128, 27 March 2014, Pages 207–216 [http://dx.doi.org/10.1016/j.neucom.2013.03.057]<br />
: JCR (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Josu Maiora; Borja Ayerdi; Manuel Graña<br />
: Random forest active learning for AAA thrombus segmentation in computed tomography angiography images<br />
: Neurocomputing Volume 126, 27 February 2014, Pages 71–77 [http://www.sciencedirect.com/science/article/pii/S0925231213006978]<br />
: (2011) JCR 1.580 (Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Michal Wozniak,, Manuel Graña, Emilio Corchado, <br />
: A Survey of Multiple Classifier System as Hybrid Systems <br />
: Information Fusion Volume 16, March 2014, Pages 3–17 [http://www.sciencedirect.com/science/article/pii/S156625351300047X]<br />
: JCR (2011) 1.467 (Q2 CSAI, Q1 CSTM) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
; Michal Wozniak, Emilio Corchado, Manuel Graña<br />
:Guest Editorial: Hybrid Intelligent Fusion Systems<br />
: Information Fusion Volume 16, March 2014, Pages 2<br />
: (2011) JCR 1.467 (Q1 CSTM, Q2 CSAI) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
;Carmen Hernández , Leónia Nunes , Domingos Lopes , Manuel Graña <br />
:Data Fusion for high spatial resolution LAI estimation <br />
:Information Fusion Volume 16, March 2014, Pages 59–67 [http://www.sciencedirect.com/science/article/pii/S1566253512000395]<br />
: JCR (2010) 1.621 (2011) 1.467 (Q1 CSTM, Q2 CSAI) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
;B Ayerdi, J Maiora, A d'Anjou, M Graña<br />
:Applications of Hybrid Extreme Rotation Forests for image segmentation<br />
:International Journal of Hybrid Intelligent Systems 11 (1), 13-24<br />
<br />
;Noelia Oses, Fadi Dornaika, and Abdelmalik Moujahid<br />
:Image-based delineation and classification of built heritage masonry [http://www.mdpi.com/2072-4292/6/3/1863]`<br />
:Remote Sens. 2014, 6(3), 1863-1889; doi:10.3390/rs6031863<br />
<br />
==2013==<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna and Manuel Grana<br />
:"State-action value modeled by ELM in Reinforcement Learning for Hose Control Problems" , <br />
: International Journal of Uncertainty Fuzziness and Knowledge-Based Systems 21, supp02, 99-116 [http://www.worldscientific.com/doi/abs/10.1142/S0218488513400199]<br />
: JCR (2011) 1.781 (Q2 CSAI) (2012) 0.886 (Q3 CSAI)<br />
<br />
;Miguel A. Veganzonesa, Mihai Datcu, Manuel Graña,<br />
: Further results on dissimilarity spaces for hyperspectral images RF-CBIR<br />
: Pattern Recognition Letters Volume 34, Issue 14, 15 October 2013, Pages 1659-1668 [http://www.sciencedirect.com/science/article/pii/S0167865513002237]<br />
: JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
;Israel Rebollo-Ruiz and Manuel Graña Romay <br />
:Swarm Graph Coloring for the identification of user groups on ERP logs <br />
: Cybernetics and systems Volume 44, Issue 6-7: 489–504, (2013) [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.803891#.UhuA7Ra5fyI]<br />
: JCR 2012 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI) : JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
;Eider Sanchez, Carlos Toro, Arkaitz Artetxe, Manuel Graña, Cesar Sanin, Edward Szczerbicki, Eduardo Carrasco and Frank Guijarro<br />
:Bridging challenges of Clinical Decision Support Systems with a semantic approach . A case study on breast cancer.<br />
: Pattern Recognition Letters 34 (2013), pp. 1758-1768 [http://authors.elsevier.com/sd/article/S016786551300144X] <br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI) : JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
<br />
;Edward Szczerbicki, Manuel Graña, Jorge Posada & Carlos Toro <br />
: CURRENT RESEARCH ADVANCES AND IMPLEMENTATIONS IN SMART KNOWLEDGE-BASED SYSTEMS: PART I<br />
: Cybernetics and Systems 44(2-3):95-97 [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762247]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Edward Szczerbicki, Manuel Graña, Jorge Posada & Carlos Toro <br />
: CURRENT RESEARCH ADVANCES AND IMPLEMENTATIONS IN SMART KNOWLEDGE-BASED SYSTEMS: PART II<br />
: Cybernetics and Systems 44(2-3):184-186[http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762254]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Iñigo Barandiaran, Manuel Graña, Marcos Nieto<br />
:An Empirical Evaluation of Interest Point Detectors<br />
:Cybernetics and Systems 44(2-3):98-117 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2013.762232]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
<br />
;Arkaitz Artetxe, Eider Sanchez, Carlos Toro, Cesar Sanin, Edward Szczerbick, Manuel Graña, Jorge Posada<br />
: Impact of Reflexive Ontologies in Semantic Clinical Decision Support Systems [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762256]<br />
:Cybernetics and Systems 44(2-3):187-203 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2013.762232]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Borja Fernandez-Gauna; Ion Marques; Manuel Graña<br />
:Undesired State-Action Prediction in Multi-Agent Reinforcement Learning. Application to Multicomponent Robotic System control<br />
: Information Sciences (2013) 232:309–324 [http://www.sciencedirect.com/science/article/pii/S0020025513000133]<br />
: (2011) JCR 2.833 (Q1 CSIS) (2012) 3.643 (Q1 CSIS) (2013) 3.893<br />
<br />
;Maite Termenon, Manuel Grana, Barros-Loscertales Alfonso and Cesar Avila<br />
:"Extreme Learning Machines for feature selection and classification of cocaine dependent patients on structural MRI data " , <br />
: Neural Processing Letters December 2013, Volume 38, Issue 3, pp 375-387 [http://link.springer.com/article/10.1007/s11063-013-9277-x]<br />
: JCR (2012) 1.240 (Q2 CSAI) 2013 1.237 (Q2 CSAI)<br />
<br />
<br />
;M. Termenon, M. Graña, A. Besga, J. Echeveste, A. Gonzalez-Pinto <br />
:Lattice Independent Component Analysis feature selection on Diffusion Weighted Imaging for Alzheimer’s Disease Classification <br />
: Neurocomputing (2013) Volume 114, 19 August 2013, Pages 132–141 [http://dx.doi.org/10.1016/j.neucom.2012.08.044]<br />
: JCR (2011) 1.580: (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) <br />
<br />
;Eloy Irigoyen, , Gorka Miñano<br />
:A NARX neural network model for enhancing cardiovascular rehabilitation therapies<br />
: Neurocomputing (2013) 109(3):9–15<br />
: JCR (2010) 1.442 (2011) 1.580 (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Ion Marques, Manuel Graña<br />
: Fusion of lattice independent and linear features improving face identification<br />
: Neurocomputing Volume 114, 19 August 2013, Pages 80–85<br />
: JCR (2011) 1.580 : (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; M. Graña, A.I Gonzalez-Acuña<br />
: Learning Parsimonious Dendritic Classifiers<br />
: Neurocomputing (2013) 109(3):3–8 [http://dx.doi.org/10.1016/j.neucom.2012.03.025] [http://www.sciencedirect.com/science/article/pii/S0925231212006765]<br />
: JCR (2010) 1.442 (2011) 1.580 (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; Alexandre Savio, Manuel Graña<br />
: Deformation Based Feature Selection for Computer Aided Diagnosis of Alzheimer's Disease<br />
: Expert Systems With Applications 40 (2013), pp. 1619-1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009]<br />
: JCR (2011) 2.203 (Q1 in CSAI) (2012) (Q2 CSAI, Q1 EEE, Q1 ORMS) (2013) 1.965 (Q1 CSAI, Q2 EEE, Q1 ORMS)<br />
<br />
; F. Dornaika, A. Moujahid, and B. Raducanu<br />
: Facial expression recognition using tracked facial actions: Classifier performance analysis<br />
: Engineering Applications of Artificial Intelligence 26(1), pp.467-477 (2013).<br />
: 5-Year Impact Factor: 1.844<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br />
:Transfer Learning with Partially Constrained Models: application to reinforcement learning of linked multicomponent robot system control<br />
: Robotics and Autonomous Systems 61 (7) (2013):694–703 [http://dx.doi.org/10.1016/j.robot.2012.07.020]<br />
: JCR (2011) 1.056 (Q2 ACS, Q3 CSAI, Q3 Rob.) (2012) 1.156 (Q3 ACS, Q3 CSAI, Q2 Robotics) (2013) 1.105 (Q3 ACS, Q3 CSAI, Q3 Robotics)<br />
<br />
; Manuel Graña, Adrian Agreda<br />
:Trust models and applications in communication and multi-agent systems<br />
: International Journal of Knowledge-based and Intelligent Engineering Systems 17 (2013) 187–193<br />
<br />
;Diego Acosta · John Congote · Iñigo Barandiaran · Oscar Ruiz · Alejandro Hoyos · Manuel Graña<br />
:Tuning of Adaptive Weight Depth Map Generation Algorithms Exploratory Data Analysis and Design of Computer Experiments (DOCE)<br />
:Journal of Mathematical Imaging and Vision 47:3-12 [http://www.springer.com/alert/urltracking.do?id=Lcb6681Ma53e73Sa]<br />
: JCR (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767 (Q2 CSAI, Q1 CSSE, Q1 MA) (2013) 2.330 (Q1 CSAI, Q1 CSSE, Q1 MA) <br />
<br />
;Bosaghzadeh, A., Moujahid, A., & Dornaika, F. <br />
:Parameterless local discriminant embedding. <br />
:Neural Processing Letters August 2013, Volume 38, Issue 1, pp 53-67<br />
: JCR (2012) 1.240 2013 1.237 (Q2 CSAI)<br />
<br />
== 2012 ==<br />
<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernadez-Gauna, Manuel Graña, Fernando Oterino and Jesus Maria Larrañaga <br />
:Effect of the Lambda Parameter in Dynamic Matrix Controllers Performance<br />
: Journal of Computer and Information Technology Vol.2, No.2, pp. 81-88<br />
<br />
;A. Moujahid, A. D'Anjou<br />
:Metabolic efficiency with fast spiking in the squid axon<br />
: Front. Comput. Neurosci. 6:95. doi: 10.3389/fncom.2012.00095 [http://www.frontiersin.org/Computational_Neuroscience/10.3389/fncom.2012.00095/abstract]<br />
: 5-Year Impact Factor: 2.147<br />
<br />
;R. Moreno , D. M. Ramik , M. Graña , and K. Madani<br />
:Image Segmentation on the Spherical Coordinate Representation of the RGB Color Space [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?reload=true&arnumber=6407287]<br />
:IET Image Processing 6(9):1275 - 1283<br />
: jCR (2010) 0.862 (2011) 0.639 (Q3 EEE) (2012) 0.895 (Q3 EEE)<br />
<br />
; A. Moujahid, A. D'Anjou, B. Cases<br />
: Community structure in real-world networks from a non-parametrical synchronization-based dynamical approach. <br />
: Chaos, Solitons and Fractals: the interdisciplinary journal of Nonlinear Science, and Nonequilibrium and Complex Phenomena<br />
: Volume 45, Issues 9–10, September–October 2012, Pages 1171–1179 <br />
: JCR 5-Year Impact Factor: 1.41<br />
<br />
; A. Besga, M. Termenon, M. Graña, J. Echeveste, J. M. Perez, A. Gonzalez-Pinto<br />
: "Discovering Alzheimer's disease and bipolar disorder white matter effects building computer aided diagnostic systems on brain diffusion tensor imaging features" [http://www.sciencedirect.com/science/article/pii/S0304394012006799].<br />
: '''Neuroscience Letters''', Volume 520, Issue 1, 27 June 2012, Pages 71–76.<br />
: JCR (2011) 2.105 (Q3 Neurosciences) (2012) 2.026 (Q3 Neurosciences)<br />
<br />
;Manuel Graña, Miguel A. Veganzones<br />
: [http://www.sciencedirect.com/science/article/pii/S0031320312001483 "An Endmember-based distance for content based hyperspectral image retrieval."]<br />
: Pattern Recognition 49(9), pp 3472-3489. September 2012. [http://dx.doi.org/10.1016/j.patcog.2012.03.015 doi]<br />
: JCR (2010) 2.607 (2011) 2.292 (Q1 CSAI, Q1 EEE) (2012) 2.632<br />
<br />
;Ion Marques, Manuel Graña<br />
:Face recognition with Lattice Independent Component Analysis and Extreme Learning Machines<br />
: Soft Computing, 2012,Volume 16, Issue 9, pp 1525-1537 [http://dx.doi.org/10.1007/s00500-012-0826-4 DOI]<br />
: JCR (2010) 1.512 (2011) 1.880 (Q2 CSAI, Q1 CSIA) (2012) 1.124 (Q3 CSAI, Q3 CSIA)<br />
<br />
; Israel Rebollo, Manuel Graña, Blanca Cases<br />
:On the effect of spatial percolation on the convergence of Graph Coloring Boid Swarm<br />
: Int. Journal on Artificial Intelligence Tools (2012) 21(6): 1250015 [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/87/IJAIT-convergence-percolation-boids-2010-12-26-submitted.zip] [http://www.worldscientific.com/doi/abs/10.1142/S0218213012500157]<br />
: JCR (2010) 0.330 (2011) 0.217 (2012) 0.250 (Q4 CSAI, Q4 CSIA)<br />
<br />
; Jbabdi S, Sotiropoulos SN, Savio AM, Graña M, Behrens TE<br />
: Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems<br />
: Magnetic Resonance in Medicine (2012) 68(6):1846-1855 [http://onlinelibrary.wiley.com/doi/10.1002/mrm.24204/abstract]<br />
: ISSN 0740-3194<br />
: JCR (2010): 3.268 (2011) 2.964 (2012) 3.267 (Q1 RNMMI)<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br />
: Improving the control of single robot hose transport <br />
: Cybernetics and Systems: An International Journal, 2012, 43:4, 261-275<br />
: JCR (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
<br />
;Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
:Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: [http://dx.doi.org/10.1016/j.neucom.2011.02.024 DOI]<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br />
<br />
; Emilio Corchado, Manuel Graña, Michal Wozniak<br />
: Neurocomputing January 2012, Volume 75, Issue 1, pp. 61-63<br />
: editorial New trends and applications on hybrid artificial intelligence systems [http://www.sciencedirect.com/science/article/pii/S0925231211004206]<br />
: JCR (2010) 1.429, : (2011) JCR 1.580 (Q2 CSAI)<br />
<br />
;Miguel A. Veganzones and Manuel Graña<br />
:[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6169956&contentType=Journals+%26+Magazines&queryText%3Dspectral+spatial+cbir "A spectral/spatial CBIR system for hyperspectral images."]<br />
: IEEE Journal of Selected Topics in Applied Earth Observation and Remote Sensing 5(2), pp 488-500. April 2012.<br />
: JCR (2010) 1.140 (2011) 1.489 (2012) 2.874 (Q2 GP, Q1 ISPT, Q1 RS)<br />
<br />
;Manuel Graña and Miguel A. Veganzones<br />
:[http://asp.eurasipjournals.com/content/2012/1/64 "Endmember induction by Lattice Associative Memories and Multi-Objective Genetic Algorithms."]<br />
: EURASIP Journal on Advances in Signal Processing 2012, nº. 1 (marzo 13, 2012): 64. [http://www.biomedcentral.com/content/qcpdf/1687-6180-2012-64.pdf pdf]<br />
:JCR (2010) 1.012 (2011) 0.811 (2012) 0.807 (Q3 EEE)<br />
<br />
;Maite Termenon, Manuel Graña<br />
:A two stage sequential ensemble applied to the classification of Alzheimer's Disease based on MRI features [http://www.springerlink.com/content/x74212k073375777/]<br />
: Neural Processing Letters (2012) 35(1): 1-12 <br />
: JCR (2010) 1.088 (2012) 1.240 (Q2 CSAI)<br />
<br />
;Ivan Macia, Manuel Graña; Celine Paloc,<br />
: Knowledge Management in Image-based Analysis of Blood Vessel Structures<br />
:Knowledge and Information Systems 30(2) (2012):457-491 [http://www.springerlink.com/content/l747p10765858h1j/]<br />
: JCR Impact factor (2009) 2.211 (2010) 2.000 (2011) 2.225<br />
<br />
<br />
;Andoni Beristain, Manuel Graña, Ana I. Gonzalez<br />
:A Pruning Algorithm for Stable Voronoi Skeletons<br />
: Journal of Mathematical Imaging and Vision (2012) 42:225–237 <br />
: JCR (2009) 1.437 (2010) 1.244 (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Z. Echegoyen, J.M. Lopez-Guede, B. Fernandez-Gauna and M. Graña<br />
: Visual Servoing of Legged Robots<br />
: Journal of Mathematical Imaging and Vision 42(2) (2012): 196-211 [http://www.springerlink.com/content/c4x1r11188l31083/ doi]<br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Peter Sussner, Estevão L.Esmi, Ivan Villaverde, Manuel Graña<br />
:The Kosko Subsethood FAM: Mathematical Background, Properties, and Some Experimental Results in Computer Vision<br />
: Journal of Mathematical Imaging and Vision (2012) 42:134–149 <br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Manuel Graña, Emilio Corchado, Michal Wozniak<br />
:Special Issue on Hybrid Artificial Intelligent Systems <br />
: Journal of Mathematical Imaging and Vision: Volume 42, Issue 2 (2012), Page 101-102 [http://www.springerlink.com/content/457024354t87u21u/ doi]<br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011). <br />
:Experiments for the selection of sub-word units in the Basque context for semantic tasks, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 49-56<br />
: DOI 10.1007/s10772-011-9109-1<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011) <br />
:Semantic Speech Recognition in the Basque context Part I: Cross-lingual approaches, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 33-40<br />
: DOI 10.1007/s10772-011-9111-7<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011). <br />
:Semantic Speech Recognition in the Basque context Part II: Language Identification for under-resourced languages, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 41-47<br />
: DOI 10.1007/s10772-011-9114-4<br />
<br />
;Juan José Valera García Vicente Gómez Garay, Eloy Irigoyen Gordo, Fernando Artaza Fano, Mikel Larrea Sukia<br />
:Intelligent Multi-Objective Nonlinear Model Predictive Control (iMO-NMPC): Towards the ‘on-line’ optimization of highly complex control problems<br />
:Expert Systems with Applications, Volume 39, Issue 7, 1 June 2012, Pages 6527–6540<br />
: JCR (2010) 1.924<br />
<br />
;Carlos Toro, Eider Sanchez, Eduardo Carrasco, Leonardo Mancilla-Amaya, Cesar Sanín, Edward Szczerbicki, Manuel Graña, Patricia Bonachela, Carlos Parra, Gloria Bueno, Frank Guijarro<br />
:USING SET OF EXPERIENCE KNOWLEDGE STRUCTURE TO EXTEND A RULE SET OF CLINICAL DECISION SUPPORT SYSTEM FOR ALZHEIMER'S DISEASE DIAGNOSIS [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/465/ToroSanchez2012.pdf]<br />
:Cybernetics and Systems: An International Journal, 2012. Volume 43, Issue 2, pp 81-95 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2012.654070 doi]<br />
:JCR (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
<br />
Carlos Toro, Javier Vaquero, Manuel Graña, Cesar Sanín, Edward Szczerbicki & Jorge Posada<br />
:BUILDING DOMAIN ONTOLOGIES FROM ENGINEERING STANDARDS [http://www.tandfonline.com/doi/full/10.1080/01969722.2012.654073#.VDGS9ufhpiU]<br />
;Cybernetics and Systems 2012, 43(2): 114-126<br />
:JCR (2010) 0.662 (2011) 1.182 (Q2 CSC) (2012) 0.973<br />
<br />
<br />
;Blanca Cases, Israel Rebollo, Manuel Graña <br />
:A Spatial-social-logical model explaining human behavior in emergency situations <br />
: Logic Journal of the IGPL 20(3):625-633<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
;Josune Gallego, Carmen Hernandez, Manuel Graña<br />
:A Morphological Cellular Automata based on Morphological Independence <br />
: Logic Journal of the IGPL 20(3):617-624<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
; Manuel Graña, Emilio Corchado, Michal Wozniak<br />
:Special issue: HAIS 2010<br />
: Logic Journal of the IGPL 20(3):533-534<br />
: doi: 10.1093/jigpal/jzr001 [http://jigpal.oxfordjournals.org/content/early/2011/02/24/jigpal.jzr001.full.pdf]<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
<br />
;G. García, J. Maiora A. Tapia, M. De Blas<br />
:Evaluation of Texture for Classification of Abdominal Aortic Aneurysm After Endovascular Repair<br />
:Journal of Digital Imaging 25(3):369-376<br />
:(ISI JCR 0.96) (2011) 1.255 (Q3 RNMMI)<br />
<br />
; Manuel Graña, Ivan Villaverde, Jose Manuel Lopez-Guede, Borja Fernandez-Gauna<br />
: Lattice Independent Component Analysis for Appearance Based Mobile Robot Localization<br />
: Neural Computing and applications, 21(5) (2012): 1031-1042<br />
: Indice de impacto JCR (2009) 0.812 (2010) 0.563 (2011) 0.699 (Q3 CSAI) (2012) (Q3 CSAI) (2012) 1.168<br />
<br />
==2011==<br />
<br />
; Josu Maiora, Manuel Graña<br />
: A computer aided diagnostic system for survival analysis after EVAR treatment<br />
: Journal of Medical Informatics & Technologies, (2011) 18:51-58<br />
<br />
;Ivan Macia; Manuel Graña; Josu Maiora; Celine Paloc; Mariano de Blas<br />
:Detection of Type II Endoleaks in Abdominal Aortic Aneurysms After Endovascular Repair<br />
:Computers in Biology and Medicine 41(10): 871-880 [http://dx.doi.org/10.1016/j.compbiomed.2011.07.005]<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112 (2011) 1.089 (Q3 B, Q3 CSIA, Q3 EB, Q4 MCB)<br />
<br />
;M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br />
:Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson’s correlation<br />
:Neuroscience letters,Volume 502, Issue 3, 20 September 2011, Pages 225-229 [http://dx.doi.org/10.1016/j.neulet.2011.07.049 on line]<br />
: Indice de impacto JCR (2010) 2.055 (2011) 2.105 (Q3 Neurosciences)<br />
<br />
; Manuel Graña, Borja Fernandez-Gauna, Jose Manuel Lopez-Guede<br />
:Cooperative Multi-Agent Reinforcement Learning for Multi-Component Robotic Systems: guidelines for future research<br />
: Paladyn . Journal of Behavioral Robotics. [http://www.editorialmanager.com/paladyn/mainpage.html] 2(2):71-81 [[media:Draft-2011-07-01-Paladyn.MARLReview.Grana.Borja.pdf|draft]]<br />
<br />
;A. Moujahid, A. d' Anjou, F. J. Torrealdea, and F. Torrealdea<br />
:Energy and information in Hodgkin-Huxley neurons<br />
:Phys. Rev. E 83, 031912 (2011)<br />
:Impact Factor: 2.400<br />
<br />
;A. Moujahid, A. d' Anjou, F. J. Torrealdea, and F. Torrealdea<br />
:Efficient synchronization of structurally adaptive coupled Hindmarsh-Rose neurons<br />
:Chaos, Solitons and Fractals: the interdisciplinary journal of Nonlinear Science, and Nonequilibrium and Complex Phenomena, DOI:10.1016/j.chaos.2011.07.005 (2011)<br />
:Impact Factor: 1.72<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI]<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112 (2011) 1.089 (Q3 B, Q3 CSIA, Q3 EB, Q4 MCB)<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez Guede, Ekaitz Zulueta, Zelmar Echegoyen, Manuel Graña<br />
: Basic Results and Experiments on Robotic Multi-Agent System for Hose Deployment and Transportation <br />
: International Journal of Artificial Intelligence (IJAI) 6(S11):183-202 [http://www.ceserp.com/cp-jour/index.php?journal=ijai&page=article&op=view&path%5B%5D=923]<br />
<br />
;Ramón Moreno, Manuel Graña, Alicia d’Anjou<br />
:Illumination Source Chromaticity Estimation Based on Spherical Coordinates in RGB<br />
: Electronics letters, (2011) 47(1):28–30 [http://dx.doi.org/10.1049/el.2010.2735 DOI]<br />
: An implementation can be found in [[Illumination Source Chromaticity Estimation (ISC)]] <br />
: ISI JCR (2009) 0.970<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181 (2011), pp. 1910-1928 <br />
:Impact factor JCR (2008): 3.095 (2009) 3.291 (2010) 2.836 (2011) 2.833 (Q1 CSIS) (2012) 3.643 (Q1 CSIS)<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
;Javier Vaquero, Carlos Toro, Manuel Graña<br />
: Preserving Virtual Engineering Knowledge thorough the Product Life Cycle<br />
: Cybernetics & Systems 42 (2): 124-138. <br />
: ISSN: 0196-9722 (Print), 1087-6553 (Online), Taylor and Francis publishers (2011)<br />
: ISI JCR (2009) 0.780 (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
: [[media:Draft jvaquero 2010.pdf|draft of the paper]]<br />
<br />
<br />
; Ivan Villaverde, Manuel Graña<br />
:Neuro-Evolutionary mobile robot egomotion estimation with a 3D ToF camera<br />
: Neural Computing and applications 20(3): 345-354, [http://dx.doi.org/10.1007/s00521-010-0384-6 DOI]<br />
: ISI JCR (2008) 0.767 (2009) 0.812 (2010) 0.563 (2011) 0.699 (Q3 CSAI)<br />
<br />
==2010==<br />
<br />
; Miguel Angel Veganzones, Leonia Nunes, Domingos Lopes, Carmen Hernández and Manuel Graña<br />
: Implementation of an user-friendly interface of the Forest-BGC model for regional/global-scale researches<br />
: [http://www.inrb.pt/inia/silva-lusitana SILVA LUSITANA], Año XVIII, December 2010.<br />
: Instituto Nacional de Investigaçao Agraria (Eds.); Portugal.<br />
: ISSN 0870-6352.<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Ekaitz Zulueta, Manuel Graña <br />
:Learning hose transport control with Q-learning <br />
: Neural Network World 20(7):913-923 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511<br />
<br />
;Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br />
:Neural classifiers for schizophrenia diagnostic support on diffusion imaging data<br />
: Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511 (2011) 0.646 (Q4 CSAI)<br />
<br />
;E. Irigoyen, M. Larrea, J. Valera, V. Gómez, F. Artaza<br />
:A Neuro‐Genetic Control Scheme application for industrial R^3 workspaces<br />
: Neural Network World 20(7):811-824 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511<br />
<br />
;Maiora, J., Garcia, G., Tapia, A., Macia, I., Legarreta, J.H., Paloc, C., De Blas, M. & Grana, M.<br />
:Thrombus Change Detection After Endovascular Abdominal Aortic Aneurysm Repair<br />
:International Journal of Computer Assisted Radiology and Surgery<br />
:Springer-Verlag, 2010, Vol. 5 (Suppl 1), pp. S15<br />
: IF JCR (2011) 1.481<br />
<br />
; Iñigo Barandiaran, Celine Paloc, Manuel Graña<br />
:Real-time Optical Markerless Tracking for Augmented Reality Applications<br />
:J Real-Time Image Processing 5(2):129-138 [http://www.springerlink.com/content/1861-8200], doi [http://www.springerlink.com/content/x281360862565132/]<br />
: Impact factor JCR (2010): 0.962 (2011) 1.020 (Q3 CSAI, Q3 EEE, Q2 ISPT)<br />
<br />
;Z. Echegoyen, I. Villaverde, R. Moreno, M. Graña, A. d’Anjou<br />
:Linked Multi-Component Mobile Robots: modeling, simulation and control<br />
: Robotics and Autonomous Systems 58(12) : 1292-1305<br />
:Impact Factor (2008): 1.214 (2009) 1.361 (2010) 1.313<br />
: DOI [http://dx.doi.org/10.1016/j.robot.2010.08.008]<br />
<br />
; Ramón Moreno, Manuel Graña, Ekaitz Zulueta<br />
:An RGB Color Gradient following Color Constancy Preservation<br />
: Electronics Letters 46(13): 908--910<br />
: ISI JCR (2009) 0.970 (2010) 1.001<br />
<br />
;Richard J Duro; Manuel Graña Romay; Javier de Lope Asiain,<br />
:On the Potential Contributions of Hybrid Intelligent Approaches to Multicomponent Robotic System Development [[media:14-04-09-Hais2008-Duro.pdf|draft]] <br />
: Information Sciences 180 (14):2635-2648<br />
: DOI [http://dx.doi.org/10.1016/j.ins.2010.02.005]<br />
: Impact factor JCR (2008): 3.095 (2009) 3.291 (2010) 2.833<br />
<br />
; Andoni Beristain, Manuel Graña<br />
: A pruning algorithm for Voronoi Skeletons<br />
: Electronics Letters 46(1):39-41 <br />
:ISI JCR (2008) 1.140 (2009) 0.970 (2010) 1.001<br />
<br />
;Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández. <br />
:A Lattice Computing approach for On-line fMRI analysis, <br />
:Image and Vision Computing 28(7):1155-1161, July 2010, <br />
: DOI http://dx.doi.org/10.1016/j.imavis.2009.10.004<br />
:ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br />
<br />
==2009==<br />
<br />
;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou, Abdelmalik Moujahid, N. Vélez de Mendizábal<br />
:Energy efficiency of information transmission by electrically coupled neurons<br />
:Biosystems, Volume 97, Issue 1, July 2009, Pages 60-71<br />
:Impact factor: 1.646<br />
<br />
;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou<br />
:Energy consumption and information transmission in model neurons<br />
:Chaos, Solitons & Fractals, Volume 40, Issue 1, 15 April 2009, Pages 60-68<br />
:Impact factor: 3.025 (2009) 3.315<br />
<br />
;Maite García-Sebastián, Ana Isabel González, Manuel Graña<br />
:An Adaptive Field Rule for Non-parametric MRI Intensity Inhomogeneity Estimation Algorithm [http://dx.doi.org/10.1016/j.neucom.2008.12.034]<br />
:Neurocomputing 72 (2009) 3556–3569<br />
:DOI: doi:10.1016/j.neucom.2008.12.034<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
:JCR (2008) 1.234<br />
<br />
;Abdelmalik Moujahid, Blanca Cases, F.J. Olasagasti<br />
:Consensus dynamics in a dolphin social network<br />
:CEUR Workshop Proceedings, vol-442,2 (ISSN 1613-0073) <br />
<br />
;Blanca Cases, F.Javier Olasagasti, Abdelmalik Moujahid, Alicia D'Anjou <br />
:Swarm Intelligence: una aplicación a la toma de decisiones colectivas<br />
:CEUR Workshop Proceedings, vol-442,6 (ISSN 1613-0073) <br />
<br />
;Andoni Beristain, Manuel Graña.<br />
:Emotion Recognition Based on the Analysis of Facial Expressions.<br />
: New Mathematics and Natural Computation (NMNC), 5(2) pp.513-534 (world scientific press [http://www.worldscinet.com/nmnc/nmnc.shtml])<br />
<br />
;Manuel Graña, Ivan Villaverde, José Orlando Maldonado, Carmen Hernandez<br />
:Two Lattice Computing approaches for the unsupervised segmentation of Hyperspectral Images<br />
: Neurocomputing, 72(2009):2111–2120<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI 10.1016/j.neucom.2008.06.026<br />
<br />
; Manuel Graña<br />
: Special issue on the Lattice Computing and Natural Computing track from JCIS 2007<br />
: Neurocomputing 72:2065–2066<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI http://dx.doi.org/10.1016/j.neucom.2008.11.021<br />
<br />
;Maite García-Sebastián, Carmen Hernandez, Alicia d'Anjou<br />
:Robustness of an Adaptive MRI Segmentation Algorithm Parametric Intensity Inhomogeneity Modeling [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V10-4V59VW3-8&_user=984461&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000049823&_version=1&_urlVersion=0&_userid=984461&md5=706b7323a65e4074fdf4015bcb1a34d3]<br />
:Neurocomputing 72 (2009) 2146-2152. [[BibTeX]]<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI 10.1016/j.neucom.2008.07.014<br />
<br />
==2008==<br />
<br />
;Pablo González-Nalda and Blanca Cases<br />
:Topos: Spiking neural networks for temporal pattern recognition in complex real sounds<br />
:Neurocomputing, (2008) 71(4-6) :721-732<br />
: JCR 2008 1.234 JCR 2009 1.440<br />
<br />
;Ivan Villaverde, Zelmar Echegoyen, Manuel Graña<br />
: Neuro-Evolutive system for ego-motion estimation with a 3D camera<br />
: Australian Journal of Intelligent Information Systems, 10(1):59-70<br />
: ISSN 1321-2133<br />
<br />
;Israel Rebollo, Manuel Graña<br />
: Aplicaciones de RFID<br />
: Novatica,195:42-46, sept. 2008, <br />
<br />
; Jose Orlando Maldonado, Manuel Graña<br />
:Recycled paper visual indexing for quality control<br />
: Expert Systems with Applications, 45(4) pp 8807–8815<br />
: ISI JCR 2007 1.177- 2008 2.596 (Q1 CSAI, Q1 EEE, Q1 ORMS)<br />
: http://dx.doi.org/10.1016/j.eswa.2008.11.023<br />
<br />
;Sanin, C., Toro, C., Vaquero, J., Szczerbicki, E. Posada, J. <br />
:Implementing Decisional DNA in Industrial Maintenance by a knowledge SOUPA Extension <br />
: Systems Science, Vol. 33 No. 2:61-68 <br />
: ISSN: 0137-1223, Wroclaw, Poland 2008.<br />
<br />
;Toro, C ,Sanin, C. / Szczerbicki, E. / Posada, J. <br />
: Reflexive Ontologies: Enhancing Ontologies with self-contained queries <br />
:Cybernetics and Systems: An International Journal, 39: 1–19 <br />
:ISSN: 0196-9722 print, 1087-6553 online, USA 2008.<br />
: ISI JCR 2006 0.964<br />
<br />
;Eloy Irigoyen, Miguel Pinzolas<br />
:Numerical bounds to assure initial local stability of NARX multilayer perceptrons and radial basis functions<br />
:Neurocomputing, 72; 539-547<br />
:ISSN: 0925-2312<br />
:ISI JCR 2008 1.745<br />
:http://dx.doi.org/10.1016/j.neucom.2007.11.018<br />
<br />
==2007==<br />
<br />
;Maite Garcia-Sebastián, Elsa Fernandez, M. Graña, Francisco J. Torrealdea<br />
:''A parametric gradient descent MRI intensity inhomogeneity correction algorithm'' (pdf [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V15-4NT84HV-2&_user=984461&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_searchStrId=940574918&_rerunOrigin=google&_acct=C000049823&_version=1&_urlVersion=0&_userid=984461&md5=112b05574e5ac5481a15297bb531da15])<br />
:Pattern Recognition Letters 28(13):1657-1666<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005, 2006, 2007) 0.552, 1.138 0.952 0.853<br />
<br />
;Ivan Villaverde, Alicia d'Anjou, M. Graña<br />
:''Morphological Neural Networks and Vision Based Simultaneous Localization and Mapping''<br />
:Integrated Computer-Aided Engineering 14(4):355-363<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.444, JCR 2006 0.236, JCR 2007 0.113, JCR 2008 0.617<br />
<br />
;Toro, C. / Posada, J / Oyarzun, J / Falcón, J<br />
: Supporting the CAD Structural Design Process with knowledge based tools, <br />
:Journal of Cybernetics and systems, <br />
:ISBN 1087-6553 (electronic) 0196-9722 (paper), Taylor and Francis publishers, 2007.<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.681, JCR 2006 0.964, JCR 2007 0.655<br />
<br />
;Sanin, C. / Szczerbicki, E. / Toro, C. <br />
: An OWL Ontology of Set of Experience Knowledge Structure <br />
: Journal of Universal Computer Science , Volume 13, number 2, pages 209-223, 2007<br />
<br />
; EKAITZ ZULUETA GUERRERO; PEDRO MARIA IRIONDO BENGOA; JOSE MANUEL LOPEZ GUEDE; Ander Etxeberria <br />
: Entropy Analysis for Stochastic System Control<br />
: INTERNATIONAL JOURNAL OF FACTORY AUTOMATION, ROBOTICS AND SOFT COMPUTING 2(2): 88-92<br />
<br />
==2006==<br />
<br />
;F.J. Torrealdea, A. d'Anjou, Manuel Graña, C. Sarasola<br />
:''Energy aspects of the synchronization of model neurons''<br />
: Physical Review E 74:011905<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2006 2.438<br />
<br />
;Toro, C. Posada, J Wundrak, S Stork, A<br />
: Improving Virtual Reality Applications in CAD through Semantics,<br />
:The International Journal of Virtual Reality, 2006, volume 5, Number 4, pages 39-46<br />
<br />
;Posada, J. / Wundrak, S. / Toro, C. / Stork, A. <br />
: Using Ontologies and STEP standards for the semantic simplification of CAD models in different engineering domains <br />
: Journal of Applied Ontology, Volume 1, Number 3-4/2006, pp. 263-279<br />
<br />
==2005==<br />
<br />
; Gurutze Arzamendi, Alicia d'Anjou, Manuel Graña, José R. Leiza, José M. Asua<br />
: ''Model reduction in emulsion polymerization using hybrid first principles/artificial neural networks models 2a Long Chain Branching Kinetics''<br />
: Macromolecular Theory and Simulations 14:125-132<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 1.544<br />
<br />
; C. Sarasola, A. d'Anjou, F.J. Torrealdea, Manuel Graña<br />
: ''Minimization of the energy flow in the synchronization of nonindentical chaotic systems''<br />
: Physical Review E 72:026223<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 2.418<br />
<br />
;C. Sarasola, , A. d'Anjou, F. J. Torrealdea and A. Moujahid<br />
: ''Energy-like functions for some dissipative chaotic systems.'' <br />
: Int. J. Bifurcation and Chaos 15(8), 2507-2521<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.845<br />
<br />
; A. d'Anjou, C. Sarasola, , F. J. Torrealdea. <br />
: ''On the characterization of different synchronization stages by energy considerations.''<br />
: Journal of Physics: Conference Series, 23, 238–251<br />
<br />
;Blanca Cases and Manuel Alfonseca<br />
:Towards a proof of the decidability of the momentary stagnation of the growth function of D0L systems<br />
:Theoretical Computer Science, Volume 341, Issues 1-3, 5 September 2005, Pages 247-262<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.743<br />
<br />
;Posada, J. / Wundrak, S. / Toro, C. / Stork, A. <br />
: Using Ontologies and STEP standards for the semantic simplification of CAD models in different engineering domains <br />
: Journal of Applied Ontology, Volume 1, Number 3-4/2006, pp. 263-279<br />
<br />
==2004==<br />
<br />
; M. Graña, J. Gallego, C. Hernandez<br />
: ''A Single Individual Evolutionary Strategy for Endmember Search in Hyperspectral Images.''<br />
:Information Sciences, Int. J 161(3-4):181-197<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2003, 2005) 0.264, 0.447, 0.723<br />
<br />
;B. Raducanu, Manuel Graña, F.X. Albizuri, A. d'Anjou<br />
: ''A Probabilistic Hit-and-Miss Tranform for Face Localization''<br />
:Pattern Análisis and Applications 7:117-127<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 0.803<br />
<br />
;Elsa Fernandez, Manuel Graña, Jesús Ruiz-Cabello<br />
: ''On a Gradient Based Evolution Strategie For Parametric Illumination Correction''<br />
:Electronics Letters 40(9):531-532<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 0.968<br />
<br />
;Cecilia Sarasola, Francisco J. Torrealdea, Alicia d'Anjou, A. Moujahid, Manuel Graña<br />
: ''Energy balance in feedback synchronization of chaotic systems''<br />
: Physical review E 69-011606<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 2.352<br />
<br />
==2003==<br />
<br />
; F. Xabier Albizuri, Manuel Graña, Bogdan Raducanu <br />
:Statistical transmission delay guarantee for nonreal-time traffic multiplexed with real-time traffic<br />
:Computer Communications 26 (2003) 1365–1375<br />
: Indicadores de calidad, JCR (2005) 0.556 (2009) 0.933<br />
<br />
; M. Graña, P. Sussner, G.X. Ritter<br />
: [[media:Grana-sussner-ritter-2003-mathware.pdf|Innovative Applications of Associative Morphological Memories]]<br />
: Mathware & Soft Computing 10(3):155-168<br />
: [http://ic.ugr.es/Mathware/index.php/Mathware/issue/view/6 journal web page]<br />
<br />
;A. d'Anjou, F. J. Torrealdea, J.R. Leiza, J.M. Asua, G. Arzamendi <br />
: ''Model reduction in emulsion polymerization using Hybrid First-Principles/Artificial Neural Networks models''<br />
: Macromolecular Theory and Simulation 12:42-56<br />
: indicadores de calidad, JCR (2005) 1.544 (2006) 1.073 (2007) 1.792 (2008) 1.912 (2009) 1.683<br />
<br />
; C. Sarasola, F.J. Torrealdea, A. d'Anjou, A. Moujahid and M. Graña<br />
: ''Feedback synchronization of chaotic systems''<br />
: Int. J. Bifurcation and Chaos 13(1):177-191<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.014<br />
<br />
;B. Raducanu, M. Graña, F.X. Albizuri<br />
: ''Morphological Scale Spaces and Associative Morphological Memories: Results on Robustness and Practical Applications''<br />
: Journal of Mathematical Imaging and Vision 9(2):113-131<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2003, 2005) 0.617,2.197<br />
<br />
;C. Sarasola, F.J. Torrealdea, A. d’Anjou, A. Moujahid, M. Graña,<br />
: ''Nonzero error synchronization of chaotic systems via dynamic coupling''<br />
: Physica D 177(1-4):39-49<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2002,2003:1.144,1.014<br />
<br />
;R. Perez de Alejo, J. Ruiz-Cabello, M. Cortijo, I. Rodriguez, I. Echave, J. Regadera, J. Arrazola, P. Avilés, P. Barreiro, D. Gargallo, M. Graña<br />
: ''Computer- Assisted Enhanced Volumetric Segmentation Magnetic Resonance Imaging Data Using a Mixture of Artificial Neural Networks''<br />
: Magnetic Resonance Imaging 21:901-912<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.420<br />
<br />
; JOSE MARIA GONZALEZ DE DURANA GARCIA; TEODORO RICO PASTRANA; EKAITZ ZULUETA GUERRERO<br />
: HYBRID MODELING OF OPEN LOOP DC-DC CONVERTERS.<br />
: FACING 11(2): 41--47<br />
<br />
==2002==<br />
<br />
;C. Sarasola, F.J. Torrealdea, A. d'Anjou, M. Graña<br />
: ''Cost of synchronizing different chaotic systems''<br />
: Mathematics and Computers in Simulation 58:309-327<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2005): 0.253,0.554<br />
<br />
; Jesús Ruiz-Cabello, Javier Regadera, Carmen Santisteban, Manuel Graña, Rigoberto Pérez de Alejo, Imanol Echave, Pablo Avilés, Ignacio Rodriguez, Inmaculada Santos, Domingo Gargallo, Manuel Cortijo<br />
: ''Monitoring actute inflammatory processes in the mouse muscle by MR imaging and spectroscopy: a comparision with pathological results''<br />
: NMR in Biomedicine 15:204-214<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2002,2005) 2.160, 2.469<br />
<br />
==2001==<br />
<br />
; B. Raducanu, M. Graña, F.X. Albizuri, A. D'Anjou<br />
: ''Face localization based on the morphological multiscale fingerprints''<br />
: Pattern Recognition Letters 22:359-371<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005) 0.552, 1.138<br />
<br />
;A.I. Gonzalez, M. Graña, J. Ruiz-Cabello, A. d'Anjou<br />
: ''Experimental results of an Evolution-based Adaptation Strategy for VQ Image Filtering'' [[media:IS2001_Evolution_VQfilter.pdf|pdf]]<br />
: Information Sciences, Int. J. 133 (3-4):249-266<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2003, 2005) 0.264, 0.447, 0.723<br />
<br />
; M.C. Hernandez, F.X Albizuri, A. d'Anjou, M. Graña, F.J. Torrealdea<br />
: ''Efficient solution of MAX-SAT and SAT via higher order Boltzmann Machines''<br />
: Investigacion Operacional 22(1):67-78<br />
:Indicadores de calidad (Índice de Impacto o similares): <br />
:Editorial y Lugar de publicación: Dept. Matematica Aplicada, Fac. Matematica y Computación, Universidad de la Habana<br />
<br />
;Israel Rebollo, Manuel Graña y Carmen Hernández<br />
:APLICACION DE ALGORITMOS ESTOCASTICOS DE OPTIMIZACION AL PROBLEMA DE LA DISPOSICION DE OBJETOS NO-CONVEXOS. [[http://rev-inv-ope.univ-paris1.fr/files/22201/IO-22201-11.pdf]]<br />
: Investigacion Operacional 22(2):184-192<br />
:Indicadores de calidad (Índice de Impacto o similares): <br />
:Editorial y Lugar de publicación: Dept. Matematica Aplicada, Fac. Matematica y Computación, Universidad de la Habana<br />
<br />
; A. d'Anjou,C. Sarasola, F.J. Torrealdea, R. Orduna, M. Graña<br />
: ''Parameter adaptive identical synchronization disclosing Lorenz chaotic mask''<br />
: Physical Review E E63-046213<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 2.202, (JCR 2002 2.397)<br />
<br />
; S. O. Anchorena, B. Cases<br />
: ''Modeling Chaotic Series by Simple Eco-Grammar Systems with Reproduction, Death and Maturation of Agents.''<br />
: Grammars, vol. 6 num. 3, pp. 155-168 (2003)<br />
: EE: http://www.springerlink.com/content/n68251124147700r/<br />
<br />
==2000==<br />
<br />
;A.I. Gonzalez, M. Graña, F.X. Albizuri, A. D'Anjou, F.J. Torrealdea<br />
: A Near Real-Time Evolution-based Adaptation Strategy for Dynamic Color Quantization of Image Sequences [[media:IS2000_Evolution_CQ_image_sequence.pdf|pdf]]<br />
: Information Sciences, Int. J. 122:161-183<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2003, 2005) 0.447, 0.723<br />
<br />
;J. Ruiz Cabello, I Rodriguez, P. Avilés, M. Graña, I. Echave, J. Regadera, D. Gargallo, M. Cortijo<br />
: Magnetic resonance imaging to monitor the biology of inflammation<br />
: European Biophysics Journal 29(4-5):363<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2005) 1.917,1.811 <br />
:ISSN: 0175-7571<br />
<br />
;I Rodriguez, M. Graña, I. Echave, P. Barreiro, M. Cortijo, J. Ruiz Cabello<br />
: MR image processing using neural networks and vector quantization<br />
: Magnetic Resonance Materials in Physics, Biology and Medicine (MAGMA) 11 (supl. 1):143<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.836<br />
<br />
;F.X. Albizuri, A.I. Gonzalez, M. Graña, A. D'Anjou<br />
: ''Neural learning for distributions on categorical data''[[media:Albizuri2000_Neural_learning.pdf|pdf]]<br />
: Neurocomputing 34:1-9<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005) 0.534, 0.790<br />
<br />
==1999==<br />
<br />
;J.A. Lozano, P. Larrañaga, M. Graña, F.X. ALbizuri<br />
: ''Genetic Algorithms: bridging the convergence gap''<br />
: Theoretical Computer Science 229:11-22<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.743<br />
<br />
;A.I. Gonzalez, M. Graña, M. Cottrell<br />
: ''Basic competitive neural networks as adaptive mechanisms for non-stationary color quantization'' [[media:Ai-gonzalez-neural-computing-appl-1999.pdf|pdf]]<br />
: Neural Computing and Applications 8: 347-367<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.403<br />
<br />
==1998==<br />
<br />
; A. I. Gonzalez, M. Graña<br />
: ''Una estrategia evolutiva para clustering no estacionario''<br />
: Inteligencia Artificial, Revista Iberoamericana de Inteligencia Artificial, 2(5): 68-73<br />
<br />
;A. I. Gonzalez, M. Graña, A. D'Anjou, F.X. Albizuri, F.J Torrealdea<br />
: ''A comparison of experimental results with a Evolution Strategy and Competitive Neural Networks for near real-time Color Quantization of image sequences'' [[media:AppInt1998_Evol_CNN_CQ_sequences.pdf|pdf]]<br />
: Applied Intelligence 8 (1): 43-51<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 0.9<br />
<br />
==1997==<br />
<br />
; M. Graña, A. D´Anjou, F.J. Torrealdea<br />
: User expectations for the intelligent blackboard [[media:M-grana-displays-1997.pdf|pdf]]<br />
: Displays 17 (3-4): 143-146<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor: 0.947, JCR 2007 1.179<br />
<br />
; A. I. Gonzalez, M. Graña, A. D´Anjou, F.X. Albizuri, M. Cottrell<br />
: A sensitivity analysis of the Self Organizing Map as an Adaptive One-pass Non-stationary Clustering algorithm: the case of Color Quantization of image sequences [[media:NPL1997_SOM_onepass_nonstat_clustering.pdf|pdf]]<br />
: Neural Processing Letters 6: 77-89<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 0.701<br />
<br />
; F.X. Albizuri, A. D'Anjou, M. Graña, P. Larrañaga<br />
: Structure of the high-order Boltzmann Machine from Independence Maps<br />
: IEEE trans. Neural Networks 8 (6): 1351-1358<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 2.205<br />
<br />
; M. Graña, A. D'Anjou , F.X. Albizuri, M. Hernandez, F. J. Torrealdea, A.I. Gonzalez<br />
: Experiments of fast learning with High Order Boltzmann Machines [[media:Grana-HOBM-appl-int-1997.pdf|pdf]]<br />
: Applied Intelligence 7 (4): 287-303<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 0.569<br />
<br />
==1996==<br />
<br />
; F.X. Albizuri, A. D'Anjou , M. Graña,J.A. Lozano<br />
: Convergence properties of High-Order Boltzmann Machines<br />
: Neural Networks 9(9): 1561-1567<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 1.665<br />
<br />
;M. Graña, A. D'Anjou , F.X. Albizuri, J.A. Lozano, P. Larrañaga, Y. Yurramendi, M. Hernandez, J.L. Jimenez, F. J. Torrealdea, M. Poza, A.I. Gonzalez<br />
: Experimentos de aprendizaje con Máquinas de Boltzmann de alto orden [[media:Inf-y-automatica-exp-HOBM-96.pdf|draft]]<br />
: Informática y Automática 29(4): 42-57<br />
<br />
==1995==<br />
<br />
;A. I. González , M. Graña - A. D'Anjou<br />
: An analysis of the GLVQ algorithm [[media:IEEENN95_analysis_GLVQ.pdf|pdf]]<br />
: IEEE Transactions on Neural Netwoks 6 (4): 1012-1016<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 2.205<br />
<br />
; F. X. Albizuri - A. D'Anjou - M. Graña - F. J. Torrealdea - M. C. Hernández<br />
: The high order Boltzmann machine: learned distribution and topology<br />
: IEEE Transactions. on Neural Networks 6 (3): 767-770<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 2.205<br />
<br />
; M. Graña - A. D'Anjou - A. I. González - F. X. Albizuri - M. Cottrell<br />
: Competitive stochastic neural networks for vector quantization of images [[media:Neurocomputing95_CSNN_VQ.pdf|pdf]]<br />
: Neurocomputing 7: 187-195<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 0.790<br />
<br />
==1993==<br />
<br />
;Alicia D'Anjou - Manuel Graña - Fco. Javier Torrealdea - Mª Carmen Hernández<br />
: Solving satisfiability via Boltzmann machines [[media:Danjou-pami-1993.pdf|pdf]]<br />
: IEEE Transactions on pattern analysis and machine intelligence, 15:514-521<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 2.923<br />
<br />
==1992==<br />
<br />
;Alicia D'Anjou - Manuel Graña - Fco. Javier Torrealdea - Mª Carmen Hernández<br />
: Máquinas de Boltzmann para la resolución del problema de la satisfacibilidad en el cálculo proposicional<br />
: Revista Española de Informática y Automática 24: 40-49<br />
<br />
==1987==<br />
<br />
;Luis M. Alonso - Manuel Graña<br />
: Formal techniques and concurrent systems<br />
: Communications ACM 30: 752-753<br />
Indicadores de calidad (Índice de Impacto o similares): ISI JCR (2008) 2.646<br />
<br />
==1986==<br />
<br />
;Manuel Graña - Fco. Javier Torrealdea<br />
: Hierarchically structured Systems [[media:Grana-torrealdaea-1986.zip|scan]] [[media:Grana-torrealdea-1986.pdf|scan compressed]]<br />
: European Journal of Operational Research 25:20-26<br />
Indicadores de calidad ISI JCR: (2008) 1.627, <br />
<br />
; Fco. Javier Torrealdea - Manuel Graña - Fernando Ferreres<br />
: A comparison between stochastic and deterministic simulation<br />
: Advances in Modelling and Simulation (AMSE press) 5:15-32<br />
:Indicadores de calidad (Índice de Impacto o similares):<br />
<br />
; T. Alvarez - J. J. Dolado - M. Graña - I. Sukia - F. J. Torrealdea<br />
: Una versión de GPSS<br />
: Revista Española de Informática y Automática 19:45-59<br />
: Indicadores de calidad (Índice de Impacto o similares):<br />
<br />
==1984==<br />
<br />
;Fco. Javier Torrealdea - Manuel Graña<br />
: Some ideas for a history dynamics model.<br />
: Dynamica 10: 103-106 [http://www.systemdynamics.org/dynamica/articles/102/5.pdf]<br />
:Originalmente editada por el Bradford System Dynamics group fue posteriormente asumida por la System Dynamics Society y convertida en la actual The International Journal of System Dynamics, manteniendo los fondos bibliograficos asociados a Dynamica.<br />
: [http://www.systemdynamics.org/conferences/1983/proceed/parallel-vol2/torre913.pdf la publicación en la conferencia de System Dynamics que dió lugar al artículo]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17778
Usuario:Daria.chizhik
2015-05-14T19:31:24Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzherimer Research, (accepted). JCR (2013) 3.796 (Q1 Clin Neurol, Q2 Neurosciences)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks Neural Networks (2015), pp. 23-33. DOI information: 10.1016/j.neunet.2015.04.002 JCR (2013) 2.076 (Q1 CSAI, Q3 Neurosciences)<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056 (Q1 CSAI)<br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, IWINAC 2015, Elche, Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17746
Usuario:Daria.chizhik
2015-04-25T13:44:03Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzherimer Research, (accepted). JCR (2013) 3.796 (Q1 Clin Neurol, Q2 Neurosciences)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (8 abril) DOI 10.1016/j.neunet.2015.04.002 JCR (2013) 2.076 (Q1 CSAI, Q3 Neurosciences)<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056 (Q1 CSAI)<br />
<br />
; Leire Ozaeta, Darya Chyzhyk, Manuel Graña<br />
: Some Results on Dynamic Causal Modeling of Auditory Hallucinations, IWINAC 2015, Elche, Junio 2015<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Revistas&diff=17744
Revistas
2015-04-25T13:23:16Z
<p>Chyzhyk.darya: /* aceptados */</p>
<hr />
<div>[[media:Revistas-GIC-1984-2009.bib.zip|bib de revistas hasta 2009]]<br />
==submitidos sin decision==<br />
<br />
<br />
<br />
; Ion Marques, Manuel Graña, and Miguel Velez-Reyes<br />
:Towards human skin detection via hyperspectral image unmixing<br />
: GRSL<br />
: JCR (2013) 1.809 (Q2 EEE, Q2 GEOCHEMISTRY & GEOPHYSICS, Q2 ISPT, Q2 remote sensing)<br />
<br />
; Dacosta-Aguayo R, Graña M, Falcón C, Fernández-Andújar M, López-Cancio E, Cáceres C, Bargalló N, Barrios M, Clemente IC, Torán Pera, Forés Rosa, Dávalos A, Tibor A and Mataró M<br />
:Multimodal imaging of the healthy contralesional hemisphere provides insight into neural, functional and cognitive recovery in ischemic stroke patients<br />
:<br />
<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br />
:Further Results Learning Hose Transport Control with Q-learning<br />
: Journal of Physical Agents (aceptado con revisiones)<br />
<br />
<br />
; Borja Ayerdi, Manuel Grana<br />
: Adaptive Hybrid Extreme Rotation Forest<br />
: Neural Processing Letters<br />
: JCR 2013 1.237 (Q2 CSAI)<br />
<br />
<br />
; Borja Ayerdi, Bartosz Krawczyk, Manuel Graña, Michal Wozniak<br />
: Combining One-Class Classifiers for Hyperspectral Image Segmentation<br />
: Fundamenta Informaticae<br />
<br />
==aceptados ==<br />
<br />
;Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzherimer Research, (accepted)<br />
: JCR (2013) 3.796 (Q1 Clin Neurol, Q2 Neurosciences)<br />
<br />
;Borja Fernandez-Gauna; Ismael Etxeberria-Agiriano; Manuel Graña<br />
:Learning Multirobot Hose Transportation and Deployment by Distributed Round-Robin Q-Learning<br />
: PlosOne (aceptado 18 de marzo)<br />
: JCR (2012) 3.730, (Q1 mult. sciences) (2013) 3.534 (Q1 mult. sci.)<br />
<br />
;Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br />
:Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification<br />
:Neurocomputing (aceptado 6 de marzo)<br />
<br />
; Borja Ayerdi, Manuel Graña<br />
: Hyperspectral Image Nonlinear Unmixing and Reconstruction by ELM Regression Ensemble<br />
: Neurocomputing<br />
<br />
;I. Macía, M. de Blas, J.H. Legarreta, L. Kabongo, O. Hernández, J.M. Egaña, J.I. Emparanza, A. García-Familiar, M. Graña<br />
:Standard and Fenestrated Endograft Sizing in EVAR Planning: Description and Validation of a Semi-automated 3D Software<br />
: Computerized Medical Imaging and Graphics [http://www.journals.elsevier.com/computerized-medical-imaging-and-graphics/] (accept 16 enero 2015)<br />
: JC· 2013 1.496 (Q3 RNMMI)<br />
<br />
;J. David Nuñez-Gonzalez, Manuel Graña, Bruno Apolloni, <br />
:Reputation Features for Trust Prediction in Social Networks, <br />
:Neurocomputing (aceptado)<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Ion Marques, Manuel Graña, Anna Kamińska-Chuchmała, Bruno Apolloni, <br />
:An experiment of subconscious intelligent social computing on household appliances, <br />
:Neurcomputing (aceptado agosto 2014)<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Fernández-Andújar M, Doornink F, Dacosta-Aguayo R, Soriano-Raya JJ, Miralbell J, Bargalló N, López-Cancio E, Pérez de la Ossa N, Gomis M, Millán M, ;Barrios M, Cáceres C, Clemente I, Dávalos A, Mataró M <br />
: Remote thalamic microstructural abnormalities related to cognitive function in ischemic stroke patients <br />
: Neuropsychology (aceptado 4 de abril 2014)<br />
: JCR (2012): 3.477 (Q1)<br />
<br />
;Maria Mataró, Juan José Soriano-Raya, Jorge López-Olóriz, Júlia Miralbell, Rosalia Dacosta-Aguayo<br />
:CEREBROVASCULAR MARKERS IN LOWERED COGNITIVE FUNCTION<br />
:Journal of Alzheimer Disease, (accepted)<br />
:JCR (2013) 3.612 (Q1 clinical neu.)<br />
<br />
== online first==<br />
<br />
;Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
:Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (8 abril) [http://www.sciencedirect.com/science/article/pii/S0893608015000805]<br />
: DOI 10.1016/j.neunet.2015.04.002<br />
: JCR (2013) 2.076 (Q1 CSAI, Q3 Neurosciences)<br />
<br />
; Alexandre Savio, Manuel Graña<br />
:Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI<br />
:Neurocomputing (aceptado 10 enero 2015) [http://authors.elsevier.com/sd/article/S0925231215002970]<br />
: DOI 10.1016/j.neucom.2015.01.079<br />
<br />
;Lopez-Guede, Jose M.; Fernandez-Gauna, Borja; Graña, Manuel; Zulueta, Ekaitz; <br />
:Training Multi-agent systems by Q-learning: approaches and empirical results<br />
: Computational Intelligence [http://onlinelibrary.wiley.com/doi/10.1111/coin.12035/abstract]<br />
: DOI: 10.1111/coin.12035<br />
: JCR (2012) 1.000 (Q3 CSAI) (2013) 0.870<br />
<br />
;PAWEL KSIENIEWICZ, DARIUSZ JANKOWSKI, BORJA AYERDI, KONRAD JACKOWSKI, MICHAL WOZNIAK, MANUEL GRANA<br />
:A Novel Hyperspectral Segmentation Algorithm - Concept and Evaluation<br />
: Logic journal IGPL (aceptado noviembre 2014) [http://jigpal.oxfordjournals.org/content/early/2014/12/29/jigpal.jzu045.short]<br />
: JCR 2013 0.530 (Q2 Logic, Q3 Mathematics, Q4 MA)<br />
<br />
;Borja Fernandez-Gauna; Jose Manuel Lopez-Guede; Ismael Etxeberria-Agiriano; Igor Ansoategi; Manuel Graña<br />
:Reinforcement Learning endowed with safe veto policies to learn the control of L-MCRS<br />
:Information Sciences [http://www.sciencedirect.com/science/article/pii/S002002551500273X]<br />
: DOI 10.1016/j.ins.2015.04.005<br />
<br />
==2015==<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International Journal of Neural Systems 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] [http://www.worldscientific.com/doi/abs/10.1142/S0129065715500070?src=recsys&journalCode=ijns&]<br />
: JCR 2014 6.056 (Q1 CSAI)<br />
<br />
;A. Suberbiola, E. Zulueta, J.M. Lopez-Guede, I. Etxeberria-Agiriano, and M. Grana<br />
: Arm Orthosis/Prosthesis Movement Control Based on Surface EMG Signal<br />
: International Journal of Neural Systems 25(3):1550009 [http://www.worldscientific.com/doi/10.1142/S0129065715500094] (2015)<br />
: JCR 2014 6.056 (Q1 CSAI)<br />
<br />
; MANUEL GRAÑA, J. DAVID NUÑEZ-GONZALEZ, LEIRE OZAETA, ANNA KAMIŃSKA-CHUCHMAŁA<br />
:Experiments of Trust Prediction in Social Networks by Artificial Neural Networks [http://www.tandfonline.com/doi/full/10.1080/01969722.2015.1007725#.VRJqFkvXmlI]<br />
: Cybernetics and Systems Volume 46, Issue 1-2, 2015 pages 19-34<br />
: DOI:10.1080/01969722.2015.1007725<br />
<br />
; EIDER SANCHEZ, CARLOS TORO, MANUEL GRAÑA, CESAR SANIN, EDWARD SZCZERBICKI<br />
:Extended Reflexive Ontologies for the generation of clinical recommendations [http://www.tandfonline.com/doi/full/10.1080/01969722.2015.1007723#abstract]<br />
: Cyberntetics and Systems Volume 46, Issue 1-2, 2015 pages 4-18<br />
<br />
<br />
<br />
;Julián Estévez, Jose Manuel Lopez-Guede, Manuel Graña<br />
: Quasi-stationary State Transportation of a Hose with Quadrotors<br />
: Robotics and Automous Systems (aceptado 5 sept) Volume 63, Part 2, January 2015, Pages 187–194 [http://www.sciencedirect.com/science/article/pii/S0921889014001791]<br />
: JCR (2013) 1.105, (Q3 Robotics, Q3 CSAI, Q3 ACS)<br />
<br />
<br />
;M Graña, B Raducanu<br />
:Bioinspired and knowledge based techniques and applications<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 1–3<br />
:DOI 10.1016/j.neucom.2014.09.039<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Darya Chyzhyk, Manuel Graña<br />
:Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160<br />
: DOI 10.1016/j.neucom.2014.09.075<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña<br />
:An active learning approach for Stroke lesion segmentation on multimodal MRI data<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 26–36 [http://www.sciencedirect.com/science/article/pii/S0925231214012466]<br />
:DOI:10.1016/j.neucom.2014.01.077<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Borja Ayerdi, Ion Marqués, Manuel Graña<br />
:Spatially regularized semisupervised Ensembles of Extreme Learning Machines for hyperspectral image segmentation<br />
: Neurocomputing (aceptado 18 de enero 2014) Volume 149, Part A, 3 February 2015, Pages 373–386 [http://www.sciencedirect.com/science/article/pii/S0925231214011424] <br />
: JCR 2013 2.005 (Q1 CSAI)<br />
: DOI 10.1016/j.neucom.2014.01.068<br />
<br />
<br />
; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna,Jose Antonio Ramos-Hernanz<br />
:Single robot dynamics approximation by ELM for Reinforcement Learning for hose control<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 116–123<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br />
:A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data [http://www.sciencedirect.com/science/article/pii/S0925231214012454]<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 37–42<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Dacosta-Aguayo, Rosalia; Graña, Manuel; Iturria-Medina, Yasser; Fernández-Andújar, Marina; López-Cancio, Elena; Caceres, Cynthia; Bargallo, Nuria; Barrios, Maite; Clemente, Imma; Pera, Guillem; Fores, Rosa; Davalos, Antoni; Mataro, Maria<br />
:Impairment of Functional Integration of the Default Mode Network correlates with Cognitive Outcome at three months after Stroke<br />
: Human Brain Mapping Volume 36, Issue 2, February 2015, Pages: 577–590<br />
: DOI: 10.1002/hbm.22648<br />
: Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine & Medical Imaging); 23/252 (Neurosciences) (2013) 6.924 (Q1 Neuroimaging, Q1 RNMMI, Q1 Neurosciences)<br />
<br />
== 2014 ==<br />
<br />
;Eider Sanchez, Peng Wang, Carlos Toro, Cesar Sanin, Manuel Graña, Edward Szczerbicki, Eduardo Carrasco, Frank Guijarro and Luis Brualla<br />
:Decisional DNA for modeling and reuse of experiential-based clinical assessments in breast cancer diagnosis and treatment<br />
: Neurocomputing Volume 146, 25 December 2014, Pages 308–318 [http://www.sciencedirect.com/science/article/pii/S0925231214007826]<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Jose Manuel Lopez-Guede, Manuel Graña, Jesus Maria Larrañaga, Fernando Oterino<br />
: Educational innovation project in the field of Industrial Informatics <br />
: Procedia - Social and Behavioral Sciences, Volume 141, 25 August 2014, Pages 20–24<br />
: DOI 10.1016/j.sbspro.2014.05.006<br />
<br />
; Jose Manuel Lopez-Guede, Manuel Graña, Jesus Maria Larrañaga, Fernando Oterino<br />
: Retrospective Vision of a Long Term Innovative Experience<br />
: Procedia - Social and Behavioral Sciences, Volume 141, 25 August 2014, Pages 15–19<br />
: DOI 10.1016/j.sbspro.2014.05.005<br />
<br />
;Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró <br />
:Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study<br />
: Human Brain Mapping (aceptado 15 nov 2013) Volume 35, Issue 8, pages 3819–3831, August 2014 [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br />
: Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine & Medical Imaging); 23/252 (Neurosciences) (2013) 6.924 (Q1 Neuroimaging, Q1 RNMMI, Q1 Neurosciences)<br />
<br />
;Borja Fernández-Gauna; Igor Ansoategui; Ismael Etxeberria-Agiriano; Manuel Graña<br />
:Reinforcement Learning of ball screw feed drive controllers<br />
:Engineering Applications of Artificial Intelligence Volume 30, April 2014, Pages 107–117 [http://www.sciencedirect.com/science/article/pii/S0952197614000220]<br />
: JCR (2011) 1.665 (Q1 ENG) (2012) 1.625 (Q1 ENG, Q2 ACS, Q2 CSAI, Q2 EEE) (2013) 1.962 (Q1 ENG, Q2 ACS, Q2 CSAI, Q2 EEE)<br />
<br />
;Borja Ayerdi and Manuel Graña<br />
:Hybrid Extreme Rotation Forest <br />
: Neural Networks Volume 52, April 2014, Pages 33–42 [http://www.sciencedirect.com/science/article/pii/S0893608014000045]<br />
: JCR (2012) 1.927 (Q1 CSAI, Q3 NS) (2013) 2.076 (Q1 CSAI, Q3 NS)<br />
<br />
;Tuia, D. ; Merenyi, E. ; Jia, X. ; Grana-Romay, M.<br />
:Foreword to the Special Issue on Machine Learning for Remote Sensing Data Processing [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6804709]<br />
: Selected Topics in Applied Earth Observations and Remote Sensing, IEEE Journal of (Volume:7 , Issue: 4 ) pp. 1007 - 1011<br />
: JCR (2012) 2.874 (Q2 GP, Q1 ISPT, Q1 RS) (2013) 2.827 (Q2 GP, Q1 ISPT, Q1 RS, Q1 EEE)<br />
<br />
; Abdelmalik Moujahid, Alicia d'ANjou, Manuel Graña<br />
:Energy demands of diverse spiking cells from the neocortex, hippocampus and thalamus<br />
: Frontiers in Computational Neuroscience (2014) 8:41 [http://journal.frontiersin.org/Journal/10.3389/fncom.2014.00041/abstract]<br />
: DOI: 10.3389/fncom.2014.00041<br />
: JCR (2013) 2.233 (Q1 MCB, Q2 neurosciences)<br />
<br />
;Iker Mesa, Eider Sanchez, Carlos Toro, Javier Diaz, Arkaitz Artetxe, Manuel Graña, Frank Guijarro, Cesar Martinez, Jose Manuel Jimenez, Shabs Rajasekharan, Jose Antonio Alarcon, Alessandro De Mauro.<br />
:Design and Development of a Mobile Cardiac Rehabilitation System<br />
:Cybernetics and Systems: An International Journal, Volume 45 Issue 2 (2014), pp 92-108 [http://www.tandfonline.com/doi/full/10.1080/01969722.2014.874804#.UyF23OCEl48]<br />
:JCR (2012): 0.973 (Q3 CSC)<br />
<br />
;Israel Rebollo-Ruiz and Manuel Graña<br />
:An empirical evaluation of Gravitational Swarm Intelligence for Graph Coloring algorithm<br />
: Neurocomputing Volume 132, 20 May 2014, Pages 79–84 [http://www.sciencedirect.com/science/article/pii/S0925231213011041]<br />
: JCR (2011) 1.580 (Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Rosalia Dacosta-Aguayo; Manuel Graña; Marina Fernandez-Andujar; Elena López-Cancio; Cynthia Cáceres; Nuria Bargallo; Maite Barrios; Imma Clemente; Antoni Dávalos; Auer Tibor; Maria Mataró<br />
:Structural integrity of the contralesional hemisphere predicts cognitive impairment in ischemic stroke at three months<br />
: PLosONe January 2014 | Volume 9 | Issue 1 | e86119 [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0086119]<br />
: JCR (2012) 3.730, (Q1 mult. sciences) (2013) 3.534 (Q1 mult. sci.)<br />
<br />
; Ramon Moreno, Francesco Corona, Amaury Lendasse, Manuel Grana and Lenio Galvao<br />
: Extreme Learning Machines for Soybean classification in remote sensing Hyperspectral Images<br />
: Neurocomputing Volume 128, 27 March 2014, Pages 207–216 [http://dx.doi.org/10.1016/j.neucom.2013.03.057]<br />
: JCR (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Josu Maiora; Borja Ayerdi; Manuel Graña<br />
: Random forest active learning for AAA thrombus segmentation in computed tomography angiography images<br />
: Neurocomputing Volume 126, 27 February 2014, Pages 71–77 [http://www.sciencedirect.com/science/article/pii/S0925231213006978]<br />
: (2011) JCR 1.580 (Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Michal Wozniak,, Manuel Graña, Emilio Corchado, <br />
: A Survey of Multiple Classifier System as Hybrid Systems <br />
: Information Fusion Volume 16, March 2014, Pages 3–17 [http://www.sciencedirect.com/science/article/pii/S156625351300047X]<br />
: JCR (2011) 1.467 (Q2 CSAI, Q1 CSTM) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
; Michal Wozniak, Emilio Corchado, Manuel Graña<br />
:Guest Editorial: Hybrid Intelligent Fusion Systems<br />
: Information Fusion Volume 16, March 2014, Pages 2<br />
: (2011) JCR 1.467 (Q1 CSTM, Q2 CSAI) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
;Carmen Hernández , Leónia Nunes , Domingos Lopes , Manuel Graña <br />
:Data Fusion for high spatial resolution LAI estimation <br />
:Information Fusion Volume 16, March 2014, Pages 59–67 [http://www.sciencedirect.com/science/article/pii/S1566253512000395]<br />
: JCR (2010) 1.621 (2011) 1.467 (Q1 CSTM, Q2 CSAI) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
;B Ayerdi, J Maiora, A d'Anjou, M Graña<br />
:Applications of Hybrid Extreme Rotation Forests for image segmentation<br />
:International Journal of Hybrid Intelligent Systems 11 (1), 13-24<br />
<br />
;Noelia Oses, Fadi Dornaika, and Abdelmalik Moujahid<br />
:Image-based delineation and classification of built heritage masonry [http://www.mdpi.com/2072-4292/6/3/1863]`<br />
:Remote Sens. 2014, 6(3), 1863-1889; doi:10.3390/rs6031863<br />
<br />
==2013==<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna and Manuel Grana<br />
:"State-action value modeled by ELM in Reinforcement Learning for Hose Control Problems" , <br />
: International Journal of Uncertainty Fuzziness and Knowledge-Based Systems 21, supp02, 99-116 [http://www.worldscientific.com/doi/abs/10.1142/S0218488513400199]<br />
: JCR (2011) 1.781 (Q2 CSAI) (2012) 0.886 (Q3 CSAI)<br />
<br />
;Miguel A. Veganzonesa, Mihai Datcu, Manuel Graña,<br />
: Further results on dissimilarity spaces for hyperspectral images RF-CBIR<br />
: Pattern Recognition Letters Volume 34, Issue 14, 15 October 2013, Pages 1659-1668 [http://www.sciencedirect.com/science/article/pii/S0167865513002237]<br />
: JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
;Israel Rebollo-Ruiz and Manuel Graña Romay <br />
:Swarm Graph Coloring for the identification of user groups on ERP logs <br />
: Cybernetics and systems Volume 44, Issue 6-7: 489–504, (2013) [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.803891#.UhuA7Ra5fyI]<br />
: JCR 2012 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI) : JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
;Eider Sanchez, Carlos Toro, Arkaitz Artetxe, Manuel Graña, Cesar Sanin, Edward Szczerbicki, Eduardo Carrasco and Frank Guijarro<br />
:Bridging challenges of Clinical Decision Support Systems with a semantic approach . A case study on breast cancer.<br />
: Pattern Recognition Letters 34 (2013), pp. 1758-1768 [http://authors.elsevier.com/sd/article/S016786551300144X] <br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI) : JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
<br />
;Edward Szczerbicki, Manuel Graña, Jorge Posada & Carlos Toro <br />
: CURRENT RESEARCH ADVANCES AND IMPLEMENTATIONS IN SMART KNOWLEDGE-BASED SYSTEMS: PART I<br />
: Cybernetics and Systems 44(2-3):95-97 [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762247]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Edward Szczerbicki, Manuel Graña, Jorge Posada & Carlos Toro <br />
: CURRENT RESEARCH ADVANCES AND IMPLEMENTATIONS IN SMART KNOWLEDGE-BASED SYSTEMS: PART II<br />
: Cybernetics and Systems 44(2-3):184-186[http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762254]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Iñigo Barandiaran, Manuel Graña, Marcos Nieto<br />
:An Empirical Evaluation of Interest Point Detectors<br />
:Cybernetics and Systems 44(2-3):98-117 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2013.762232]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
<br />
;Arkaitz Artetxe, Eider Sanchez, Carlos Toro, Cesar Sanin, Edward Szczerbick, Manuel Graña, Jorge Posada<br />
: Impact of Reflexive Ontologies in Semantic Clinical Decision Support Systems [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762256]<br />
:Cybernetics and Systems 44(2-3):187-203 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2013.762232]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Borja Fernandez-Gauna; Ion Marques; Manuel Graña<br />
:Undesired State-Action Prediction in Multi-Agent Reinforcement Learning. Application to Multicomponent Robotic System control<br />
: Information Sciences (2013) 232:309–324 [http://www.sciencedirect.com/science/article/pii/S0020025513000133]<br />
: (2011) JCR 2.833 (Q1 CSIS) (2012) 3.643 (Q1 CSIS) (2013) 3.893<br />
<br />
;Maite Termenon, Manuel Grana, Barros-Loscertales Alfonso and Cesar Avila<br />
:"Extreme Learning Machines for feature selection and classification of cocaine dependent patients on structural MRI data " , <br />
: Neural Processing Letters December 2013, Volume 38, Issue 3, pp 375-387 [http://link.springer.com/article/10.1007/s11063-013-9277-x]<br />
: JCR (2012) 1.240 (Q2 CSAI) 2013 1.237 (Q2 CSAI)<br />
<br />
<br />
;M. Termenon, M. Graña, A. Besga, J. Echeveste, A. Gonzalez-Pinto <br />
:Lattice Independent Component Analysis feature selection on Diffusion Weighted Imaging for Alzheimer’s Disease Classification <br />
: Neurocomputing (2013) Volume 114, 19 August 2013, Pages 132–141 [http://dx.doi.org/10.1016/j.neucom.2012.08.044]<br />
: JCR (2011) 1.580: (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) <br />
<br />
;Eloy Irigoyen, , Gorka Miñano<br />
:A NARX neural network model for enhancing cardiovascular rehabilitation therapies<br />
: Neurocomputing (2013) 109(3):9–15<br />
: JCR (2010) 1.442 (2011) 1.580 (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Ion Marques, Manuel Graña<br />
: Fusion of lattice independent and linear features improving face identification<br />
: Neurocomputing Volume 114, 19 August 2013, Pages 80–85<br />
: JCR (2011) 1.580 : (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; M. Graña, A.I Gonzalez-Acuña<br />
: Learning Parsimonious Dendritic Classifiers<br />
: Neurocomputing (2013) 109(3):3–8 [http://dx.doi.org/10.1016/j.neucom.2012.03.025] [http://www.sciencedirect.com/science/article/pii/S0925231212006765]<br />
: JCR (2010) 1.442 (2011) 1.580 (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; Alexandre Savio, Manuel Graña<br />
: Deformation Based Feature Selection for Computer Aided Diagnosis of Alzheimer's Disease<br />
: Expert Systems With Applications 40 (2013), pp. 1619-1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009]<br />
: JCR (2011) 2.203 (Q1 in CSAI) (2012) (Q2 CSAI, Q1 EEE, Q1 ORMS) (2013) 1.965 (Q1 CSAI, Q2 EEE, Q1 ORMS)<br />
<br />
; F. Dornaika, A. Moujahid, and B. Raducanu<br />
: Facial expression recognition using tracked facial actions: Classifier performance analysis<br />
: Engineering Applications of Artificial Intelligence 26(1), pp.467-477 (2013).<br />
: 5-Year Impact Factor: 1.844<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br />
:Transfer Learning with Partially Constrained Models: application to reinforcement learning of linked multicomponent robot system control<br />
: Robotics and Autonomous Systems 61 (7) (2013):694–703 [http://dx.doi.org/10.1016/j.robot.2012.07.020]<br />
: JCR (2011) 1.056 (Q2 ACS, Q3 CSAI, Q3 Rob.) (2012) 1.156 (Q3 ACS, Q3 CSAI, Q2 Robotics) (2013) 1.105 (Q3 ACS, Q3 CSAI, Q3 Robotics)<br />
<br />
; Manuel Graña, Adrian Agreda<br />
:Trust models and applications in communication and multi-agent systems<br />
: International Journal of Knowledge-based and Intelligent Engineering Systems 17 (2013) 187–193<br />
<br />
;Diego Acosta · John Congote · Iñigo Barandiaran · Oscar Ruiz · Alejandro Hoyos · Manuel Graña<br />
:Tuning of Adaptive Weight Depth Map Generation Algorithms Exploratory Data Analysis and Design of Computer Experiments (DOCE)<br />
:Journal of Mathematical Imaging and Vision 47:3-12 [http://www.springer.com/alert/urltracking.do?id=Lcb6681Ma53e73Sa]<br />
: JCR (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767 (Q2 CSAI, Q1 CSSE, Q1 MA) (2013) 2.330 (Q1 CSAI, Q1 CSSE, Q1 MA) <br />
<br />
;Bosaghzadeh, A., Moujahid, A., & Dornaika, F. <br />
:Parameterless local discriminant embedding. <br />
:Neural Processing Letters August 2013, Volume 38, Issue 1, pp 53-67<br />
: JCR (2012) 1.240 2013 1.237 (Q2 CSAI)<br />
<br />
== 2012 ==<br />
<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernadez-Gauna, Manuel Graña, Fernando Oterino and Jesus Maria Larrañaga <br />
:Effect of the Lambda Parameter in Dynamic Matrix Controllers Performance<br />
: Journal of Computer and Information Technology Vol.2, No.2, pp. 81-88<br />
<br />
;A. Moujahid, A. D'Anjou<br />
:Metabolic efficiency with fast spiking in the squid axon<br />
: Front. Comput. Neurosci. 6:95. doi: 10.3389/fncom.2012.00095 [http://www.frontiersin.org/Computational_Neuroscience/10.3389/fncom.2012.00095/abstract]<br />
: 5-Year Impact Factor: 2.147<br />
<br />
;R. Moreno , D. M. Ramik , M. Graña , and K. Madani<br />
:Image Segmentation on the Spherical Coordinate Representation of the RGB Color Space [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?reload=true&arnumber=6407287]<br />
:IET Image Processing 6(9):1275 - 1283<br />
: jCR (2010) 0.862 (2011) 0.639 (Q3 EEE) (2012) 0.895 (Q3 EEE)<br />
<br />
; A. Moujahid, A. D'Anjou, B. Cases<br />
: Community structure in real-world networks from a non-parametrical synchronization-based dynamical approach. <br />
: Chaos, Solitons and Fractals: the interdisciplinary journal of Nonlinear Science, and Nonequilibrium and Complex Phenomena<br />
: Volume 45, Issues 9–10, September–October 2012, Pages 1171–1179 <br />
: JCR 5-Year Impact Factor: 1.41<br />
<br />
; A. Besga, M. Termenon, M. Graña, J. Echeveste, J. M. Perez, A. Gonzalez-Pinto<br />
: "Discovering Alzheimer's disease and bipolar disorder white matter effects building computer aided diagnostic systems on brain diffusion tensor imaging features" [http://www.sciencedirect.com/science/article/pii/S0304394012006799].<br />
: '''Neuroscience Letters''', Volume 520, Issue 1, 27 June 2012, Pages 71–76.<br />
: JCR (2011) 2.105 (Q3 Neurosciences) (2012) 2.026 (Q3 Neurosciences)<br />
<br />
;Manuel Graña, Miguel A. Veganzones<br />
: [http://www.sciencedirect.com/science/article/pii/S0031320312001483 "An Endmember-based distance for content based hyperspectral image retrieval."]<br />
: Pattern Recognition 49(9), pp 3472-3489. September 2012. [http://dx.doi.org/10.1016/j.patcog.2012.03.015 doi]<br />
: JCR (2010) 2.607 (2011) 2.292 (Q1 CSAI, Q1 EEE) (2012) 2.632<br />
<br />
;Ion Marques, Manuel Graña<br />
:Face recognition with Lattice Independent Component Analysis and Extreme Learning Machines<br />
: Soft Computing, 2012,Volume 16, Issue 9, pp 1525-1537 [http://dx.doi.org/10.1007/s00500-012-0826-4 DOI]<br />
: JCR (2010) 1.512 (2011) 1.880 (Q2 CSAI, Q1 CSIA) (2012) 1.124 (Q3 CSAI, Q3 CSIA)<br />
<br />
; Israel Rebollo, Manuel Graña, Blanca Cases<br />
:On the effect of spatial percolation on the convergence of Graph Coloring Boid Swarm<br />
: Int. Journal on Artificial Intelligence Tools (2012) 21(6): 1250015 [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/87/IJAIT-convergence-percolation-boids-2010-12-26-submitted.zip] [http://www.worldscientific.com/doi/abs/10.1142/S0218213012500157]<br />
: JCR (2010) 0.330 (2011) 0.217 (2012) 0.250 (Q4 CSAI, Q4 CSIA)<br />
<br />
; Jbabdi S, Sotiropoulos SN, Savio AM, Graña M, Behrens TE<br />
: Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems<br />
: Magnetic Resonance in Medicine (2012) 68(6):1846-1855 [http://onlinelibrary.wiley.com/doi/10.1002/mrm.24204/abstract]<br />
: ISSN 0740-3194<br />
: JCR (2010): 3.268 (2011) 2.964 (2012) 3.267 (Q1 RNMMI)<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br />
: Improving the control of single robot hose transport <br />
: Cybernetics and Systems: An International Journal, 2012, 43:4, 261-275<br />
: JCR (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
<br />
;Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
:Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: [http://dx.doi.org/10.1016/j.neucom.2011.02.024 DOI]<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br />
<br />
; Emilio Corchado, Manuel Graña, Michal Wozniak<br />
: Neurocomputing January 2012, Volume 75, Issue 1, pp. 61-63<br />
: editorial New trends and applications on hybrid artificial intelligence systems [http://www.sciencedirect.com/science/article/pii/S0925231211004206]<br />
: JCR (2010) 1.429, : (2011) JCR 1.580 (Q2 CSAI)<br />
<br />
;Miguel A. Veganzones and Manuel Graña<br />
:[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6169956&contentType=Journals+%26+Magazines&queryText%3Dspectral+spatial+cbir "A spectral/spatial CBIR system for hyperspectral images."]<br />
: IEEE Journal of Selected Topics in Applied Earth Observation and Remote Sensing 5(2), pp 488-500. April 2012.<br />
: JCR (2010) 1.140 (2011) 1.489 (2012) 2.874 (Q2 GP, Q1 ISPT, Q1 RS)<br />
<br />
;Manuel Graña and Miguel A. Veganzones<br />
:[http://asp.eurasipjournals.com/content/2012/1/64 "Endmember induction by Lattice Associative Memories and Multi-Objective Genetic Algorithms."]<br />
: EURASIP Journal on Advances in Signal Processing 2012, nº. 1 (marzo 13, 2012): 64. [http://www.biomedcentral.com/content/qcpdf/1687-6180-2012-64.pdf pdf]<br />
:JCR (2010) 1.012 (2011) 0.811 (2012) 0.807 (Q3 EEE)<br />
<br />
;Maite Termenon, Manuel Graña<br />
:A two stage sequential ensemble applied to the classification of Alzheimer's Disease based on MRI features [http://www.springerlink.com/content/x74212k073375777/]<br />
: Neural Processing Letters (2012) 35(1): 1-12 <br />
: JCR (2010) 1.088 (2012) 1.240 (Q2 CSAI)<br />
<br />
;Ivan Macia, Manuel Graña; Celine Paloc,<br />
: Knowledge Management in Image-based Analysis of Blood Vessel Structures<br />
:Knowledge and Information Systems 30(2) (2012):457-491 [http://www.springerlink.com/content/l747p10765858h1j/]<br />
: JCR Impact factor (2009) 2.211 (2010) 2.000 (2011) 2.225<br />
<br />
<br />
;Andoni Beristain, Manuel Graña, Ana I. Gonzalez<br />
:A Pruning Algorithm for Stable Voronoi Skeletons<br />
: Journal of Mathematical Imaging and Vision (2012) 42:225–237 <br />
: JCR (2009) 1.437 (2010) 1.244 (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Z. Echegoyen, J.M. Lopez-Guede, B. Fernandez-Gauna and M. Graña<br />
: Visual Servoing of Legged Robots<br />
: Journal of Mathematical Imaging and Vision 42(2) (2012): 196-211 [http://www.springerlink.com/content/c4x1r11188l31083/ doi]<br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Peter Sussner, Estevão L.Esmi, Ivan Villaverde, Manuel Graña<br />
:The Kosko Subsethood FAM: Mathematical Background, Properties, and Some Experimental Results in Computer Vision<br />
: Journal of Mathematical Imaging and Vision (2012) 42:134–149 <br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Manuel Graña, Emilio Corchado, Michal Wozniak<br />
:Special Issue on Hybrid Artificial Intelligent Systems <br />
: Journal of Mathematical Imaging and Vision: Volume 42, Issue 2 (2012), Page 101-102 [http://www.springerlink.com/content/457024354t87u21u/ doi]<br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011). <br />
:Experiments for the selection of sub-word units in the Basque context for semantic tasks, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 49-56<br />
: DOI 10.1007/s10772-011-9109-1<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011) <br />
:Semantic Speech Recognition in the Basque context Part I: Cross-lingual approaches, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 33-40<br />
: DOI 10.1007/s10772-011-9111-7<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011). <br />
:Semantic Speech Recognition in the Basque context Part II: Language Identification for under-resourced languages, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 41-47<br />
: DOI 10.1007/s10772-011-9114-4<br />
<br />
;Juan José Valera García Vicente Gómez Garay, Eloy Irigoyen Gordo, Fernando Artaza Fano, Mikel Larrea Sukia<br />
:Intelligent Multi-Objective Nonlinear Model Predictive Control (iMO-NMPC): Towards the ‘on-line’ optimization of highly complex control problems<br />
:Expert Systems with Applications, Volume 39, Issue 7, 1 June 2012, Pages 6527–6540<br />
: JCR (2010) 1.924<br />
<br />
;Carlos Toro, Eider Sanchez, Eduardo Carrasco, Leonardo Mancilla-Amaya, Cesar Sanín, Edward Szczerbicki, Manuel Graña, Patricia Bonachela, Carlos Parra, Gloria Bueno, Frank Guijarro<br />
:USING SET OF EXPERIENCE KNOWLEDGE STRUCTURE TO EXTEND A RULE SET OF CLINICAL DECISION SUPPORT SYSTEM FOR ALZHEIMER'S DISEASE DIAGNOSIS [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/465/ToroSanchez2012.pdf]<br />
:Cybernetics and Systems: An International Journal, 2012. Volume 43, Issue 2, pp 81-95 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2012.654070 doi]<br />
:JCR (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
<br />
Carlos Toro, Javier Vaquero, Manuel Graña, Cesar Sanín, Edward Szczerbicki & Jorge Posada<br />
:BUILDING DOMAIN ONTOLOGIES FROM ENGINEERING STANDARDS [http://www.tandfonline.com/doi/full/10.1080/01969722.2012.654073#.VDGS9ufhpiU]<br />
;Cybernetics and Systems 2012, 43(2): 114-126<br />
:JCR (2010) 0.662 (2011) 1.182 (Q2 CSC) (2012) 0.973<br />
<br />
<br />
;Blanca Cases, Israel Rebollo, Manuel Graña <br />
:A Spatial-social-logical model explaining human behavior in emergency situations <br />
: Logic Journal of the IGPL 20(3):625-633<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
;Josune Gallego, Carmen Hernandez, Manuel Graña<br />
:A Morphological Cellular Automata based on Morphological Independence <br />
: Logic Journal of the IGPL 20(3):617-624<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
; Manuel Graña, Emilio Corchado, Michal Wozniak<br />
:Special issue: HAIS 2010<br />
: Logic Journal of the IGPL 20(3):533-534<br />
: doi: 10.1093/jigpal/jzr001 [http://jigpal.oxfordjournals.org/content/early/2011/02/24/jigpal.jzr001.full.pdf]<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
<br />
;G. García, J. Maiora A. Tapia, M. De Blas<br />
:Evaluation of Texture for Classification of Abdominal Aortic Aneurysm After Endovascular Repair<br />
:Journal of Digital Imaging 25(3):369-376<br />
:(ISI JCR 0.96) (2011) 1.255 (Q3 RNMMI)<br />
<br />
; Manuel Graña, Ivan Villaverde, Jose Manuel Lopez-Guede, Borja Fernandez-Gauna<br />
: Lattice Independent Component Analysis for Appearance Based Mobile Robot Localization<br />
: Neural Computing and applications, 21(5) (2012): 1031-1042<br />
: Indice de impacto JCR (2009) 0.812 (2010) 0.563 (2011) 0.699 (Q3 CSAI) (2012) (Q3 CSAI) (2012) 1.168<br />
<br />
==2011==<br />
<br />
; Josu Maiora, Manuel Graña<br />
: A computer aided diagnostic system for survival analysis after EVAR treatment<br />
: Journal of Medical Informatics & Technologies, (2011) 18:51-58<br />
<br />
;Ivan Macia; Manuel Graña; Josu Maiora; Celine Paloc; Mariano de Blas<br />
:Detection of Type II Endoleaks in Abdominal Aortic Aneurysms After Endovascular Repair<br />
:Computers in Biology and Medicine 41(10): 871-880 [http://dx.doi.org/10.1016/j.compbiomed.2011.07.005]<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112 (2011) 1.089 (Q3 B, Q3 CSIA, Q3 EB, Q4 MCB)<br />
<br />
;M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br />
:Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson’s correlation<br />
:Neuroscience letters,Volume 502, Issue 3, 20 September 2011, Pages 225-229 [http://dx.doi.org/10.1016/j.neulet.2011.07.049 on line]<br />
: Indice de impacto JCR (2010) 2.055 (2011) 2.105 (Q3 Neurosciences)<br />
<br />
; Manuel Graña, Borja Fernandez-Gauna, Jose Manuel Lopez-Guede<br />
:Cooperative Multi-Agent Reinforcement Learning for Multi-Component Robotic Systems: guidelines for future research<br />
: Paladyn . Journal of Behavioral Robotics. [http://www.editorialmanager.com/paladyn/mainpage.html] 2(2):71-81 [[media:Draft-2011-07-01-Paladyn.MARLReview.Grana.Borja.pdf|draft]]<br />
<br />
;A. Moujahid, A. d' Anjou, F. J. Torrealdea, and F. Torrealdea<br />
:Energy and information in Hodgkin-Huxley neurons<br />
:Phys. Rev. E 83, 031912 (2011)<br />
:Impact Factor: 2.400<br />
<br />
;A. Moujahid, A. d' Anjou, F. J. Torrealdea, and F. Torrealdea<br />
:Efficient synchronization of structurally adaptive coupled Hindmarsh-Rose neurons<br />
:Chaos, Solitons and Fractals: the interdisciplinary journal of Nonlinear Science, and Nonequilibrium and Complex Phenomena, DOI:10.1016/j.chaos.2011.07.005 (2011)<br />
:Impact Factor: 1.72<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI]<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112 (2011) 1.089 (Q3 B, Q3 CSIA, Q3 EB, Q4 MCB)<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez Guede, Ekaitz Zulueta, Zelmar Echegoyen, Manuel Graña<br />
: Basic Results and Experiments on Robotic Multi-Agent System for Hose Deployment and Transportation <br />
: International Journal of Artificial Intelligence (IJAI) 6(S11):183-202 [http://www.ceserp.com/cp-jour/index.php?journal=ijai&page=article&op=view&path%5B%5D=923]<br />
<br />
;Ramón Moreno, Manuel Graña, Alicia d’Anjou<br />
:Illumination Source Chromaticity Estimation Based on Spherical Coordinates in RGB<br />
: Electronics letters, (2011) 47(1):28–30 [http://dx.doi.org/10.1049/el.2010.2735 DOI]<br />
: An implementation can be found in [[Illumination Source Chromaticity Estimation (ISC)]] <br />
: ISI JCR (2009) 0.970<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181 (2011), pp. 1910-1928 <br />
:Impact factor JCR (2008): 3.095 (2009) 3.291 (2010) 2.836 (2011) 2.833 (Q1 CSIS) (2012) 3.643 (Q1 CSIS)<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
;Javier Vaquero, Carlos Toro, Manuel Graña<br />
: Preserving Virtual Engineering Knowledge thorough the Product Life Cycle<br />
: Cybernetics & Systems 42 (2): 124-138. <br />
: ISSN: 0196-9722 (Print), 1087-6553 (Online), Taylor and Francis publishers (2011)<br />
: ISI JCR (2009) 0.780 (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
: [[media:Draft jvaquero 2010.pdf|draft of the paper]]<br />
<br />
<br />
; Ivan Villaverde, Manuel Graña<br />
:Neuro-Evolutionary mobile robot egomotion estimation with a 3D ToF camera<br />
: Neural Computing and applications 20(3): 345-354, [http://dx.doi.org/10.1007/s00521-010-0384-6 DOI]<br />
: ISI JCR (2008) 0.767 (2009) 0.812 (2010) 0.563 (2011) 0.699 (Q3 CSAI)<br />
<br />
==2010==<br />
<br />
; Miguel Angel Veganzones, Leonia Nunes, Domingos Lopes, Carmen Hernández and Manuel Graña<br />
: Implementation of an user-friendly interface of the Forest-BGC model for regional/global-scale researches<br />
: [http://www.inrb.pt/inia/silva-lusitana SILVA LUSITANA], Año XVIII, December 2010.<br />
: Instituto Nacional de Investigaçao Agraria (Eds.); Portugal.<br />
: ISSN 0870-6352.<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Ekaitz Zulueta, Manuel Graña <br />
:Learning hose transport control with Q-learning <br />
: Neural Network World 20(7):913-923 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511<br />
<br />
;Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br />
:Neural classifiers for schizophrenia diagnostic support on diffusion imaging data<br />
: Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511 (2011) 0.646 (Q4 CSAI)<br />
<br />
;E. Irigoyen, M. Larrea, J. Valera, V. Gómez, F. Artaza<br />
:A Neuro‐Genetic Control Scheme application for industrial R^3 workspaces<br />
: Neural Network World 20(7):811-824 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511<br />
<br />
;Maiora, J., Garcia, G., Tapia, A., Macia, I., Legarreta, J.H., Paloc, C., De Blas, M. & Grana, M.<br />
:Thrombus Change Detection After Endovascular Abdominal Aortic Aneurysm Repair<br />
:International Journal of Computer Assisted Radiology and Surgery<br />
:Springer-Verlag, 2010, Vol. 5 (Suppl 1), pp. S15<br />
: IF JCR (2011) 1.481<br />
<br />
; Iñigo Barandiaran, Celine Paloc, Manuel Graña<br />
:Real-time Optical Markerless Tracking for Augmented Reality Applications<br />
:J Real-Time Image Processing 5(2):129-138 [http://www.springerlink.com/content/1861-8200], doi [http://www.springerlink.com/content/x281360862565132/]<br />
: Impact factor JCR (2010): 0.962 (2011) 1.020 (Q3 CSAI, Q3 EEE, Q2 ISPT)<br />
<br />
;Z. Echegoyen, I. Villaverde, R. Moreno, M. Graña, A. d’Anjou<br />
:Linked Multi-Component Mobile Robots: modeling, simulation and control<br />
: Robotics and Autonomous Systems 58(12) : 1292-1305<br />
:Impact Factor (2008): 1.214 (2009) 1.361 (2010) 1.313<br />
: DOI [http://dx.doi.org/10.1016/j.robot.2010.08.008]<br />
<br />
; Ramón Moreno, Manuel Graña, Ekaitz Zulueta<br />
:An RGB Color Gradient following Color Constancy Preservation<br />
: Electronics Letters 46(13): 908--910<br />
: ISI JCR (2009) 0.970 (2010) 1.001<br />
<br />
;Richard J Duro; Manuel Graña Romay; Javier de Lope Asiain,<br />
:On the Potential Contributions of Hybrid Intelligent Approaches to Multicomponent Robotic System Development [[media:14-04-09-Hais2008-Duro.pdf|draft]] <br />
: Information Sciences 180 (14):2635-2648<br />
: DOI [http://dx.doi.org/10.1016/j.ins.2010.02.005]<br />
: Impact factor JCR (2008): 3.095 (2009) 3.291 (2010) 2.833<br />
<br />
; Andoni Beristain, Manuel Graña<br />
: A pruning algorithm for Voronoi Skeletons<br />
: Electronics Letters 46(1):39-41 <br />
:ISI JCR (2008) 1.140 (2009) 0.970 (2010) 1.001<br />
<br />
;Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández. <br />
:A Lattice Computing approach for On-line fMRI analysis, <br />
:Image and Vision Computing 28(7):1155-1161, July 2010, <br />
: DOI http://dx.doi.org/10.1016/j.imavis.2009.10.004<br />
:ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br />
<br />
==2009==<br />
<br />
;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou, Abdelmalik Moujahid, N. Vélez de Mendizábal<br />
:Energy efficiency of information transmission by electrically coupled neurons<br />
:Biosystems, Volume 97, Issue 1, July 2009, Pages 60-71<br />
:Impact factor: 1.646<br />
<br />
;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou<br />
:Energy consumption and information transmission in model neurons<br />
:Chaos, Solitons & Fractals, Volume 40, Issue 1, 15 April 2009, Pages 60-68<br />
:Impact factor: 3.025 (2009) 3.315<br />
<br />
;Maite García-Sebastián, Ana Isabel González, Manuel Graña<br />
:An Adaptive Field Rule for Non-parametric MRI Intensity Inhomogeneity Estimation Algorithm [http://dx.doi.org/10.1016/j.neucom.2008.12.034]<br />
:Neurocomputing 72 (2009) 3556–3569<br />
:DOI: doi:10.1016/j.neucom.2008.12.034<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
:JCR (2008) 1.234<br />
<br />
;Abdelmalik Moujahid, Blanca Cases, F.J. Olasagasti<br />
:Consensus dynamics in a dolphin social network<br />
:CEUR Workshop Proceedings, vol-442,2 (ISSN 1613-0073) <br />
<br />
;Blanca Cases, F.Javier Olasagasti, Abdelmalik Moujahid, Alicia D'Anjou <br />
:Swarm Intelligence: una aplicación a la toma de decisiones colectivas<br />
:CEUR Workshop Proceedings, vol-442,6 (ISSN 1613-0073) <br />
<br />
;Andoni Beristain, Manuel Graña.<br />
:Emotion Recognition Based on the Analysis of Facial Expressions.<br />
: New Mathematics and Natural Computation (NMNC), 5(2) pp.513-534 (world scientific press [http://www.worldscinet.com/nmnc/nmnc.shtml])<br />
<br />
;Manuel Graña, Ivan Villaverde, José Orlando Maldonado, Carmen Hernandez<br />
:Two Lattice Computing approaches for the unsupervised segmentation of Hyperspectral Images<br />
: Neurocomputing, 72(2009):2111–2120<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI 10.1016/j.neucom.2008.06.026<br />
<br />
; Manuel Graña<br />
: Special issue on the Lattice Computing and Natural Computing track from JCIS 2007<br />
: Neurocomputing 72:2065–2066<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI http://dx.doi.org/10.1016/j.neucom.2008.11.021<br />
<br />
;Maite García-Sebastián, Carmen Hernandez, Alicia d'Anjou<br />
:Robustness of an Adaptive MRI Segmentation Algorithm Parametric Intensity Inhomogeneity Modeling [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V10-4V59VW3-8&_user=984461&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000049823&_version=1&_urlVersion=0&_userid=984461&md5=706b7323a65e4074fdf4015bcb1a34d3]<br />
:Neurocomputing 72 (2009) 2146-2152. [[BibTeX]]<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI 10.1016/j.neucom.2008.07.014<br />
<br />
==2008==<br />
<br />
;Pablo González-Nalda and Blanca Cases<br />
:Topos: Spiking neural networks for temporal pattern recognition in complex real sounds<br />
:Neurocomputing, (2008) 71(4-6) :721-732<br />
: JCR 2008 1.234 JCR 2009 1.440<br />
<br />
;Ivan Villaverde, Zelmar Echegoyen, Manuel Graña<br />
: Neuro-Evolutive system for ego-motion estimation with a 3D camera<br />
: Australian Journal of Intelligent Information Systems, 10(1):59-70<br />
: ISSN 1321-2133<br />
<br />
;Israel Rebollo, Manuel Graña<br />
: Aplicaciones de RFID<br />
: Novatica,195:42-46, sept. 2008, <br />
<br />
; Jose Orlando Maldonado, Manuel Graña<br />
:Recycled paper visual indexing for quality control<br />
: Expert Systems with Applications, 45(4) pp 8807–8815<br />
: ISI JCR 2007 1.177- 2008 2.596 (Q1 CSAI, Q1 EEE, Q1 ORMS)<br />
: http://dx.doi.org/10.1016/j.eswa.2008.11.023<br />
<br />
;Sanin, C., Toro, C., Vaquero, J., Szczerbicki, E. Posada, J. <br />
:Implementing Decisional DNA in Industrial Maintenance by a knowledge SOUPA Extension <br />
: Systems Science, Vol. 33 No. 2:61-68 <br />
: ISSN: 0137-1223, Wroclaw, Poland 2008.<br />
<br />
;Toro, C ,Sanin, C. / Szczerbicki, E. / Posada, J. <br />
: Reflexive Ontologies: Enhancing Ontologies with self-contained queries <br />
:Cybernetics and Systems: An International Journal, 39: 1–19 <br />
:ISSN: 0196-9722 print, 1087-6553 online, USA 2008.<br />
: ISI JCR 2006 0.964<br />
<br />
;Eloy Irigoyen, Miguel Pinzolas<br />
:Numerical bounds to assure initial local stability of NARX multilayer perceptrons and radial basis functions<br />
:Neurocomputing, 72; 539-547<br />
:ISSN: 0925-2312<br />
:ISI JCR 2008 1.745<br />
:http://dx.doi.org/10.1016/j.neucom.2007.11.018<br />
<br />
==2007==<br />
<br />
;Maite Garcia-Sebastián, Elsa Fernandez, M. Graña, Francisco J. Torrealdea<br />
:''A parametric gradient descent MRI intensity inhomogeneity correction algorithm'' (pdf [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V15-4NT84HV-2&_user=984461&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_searchStrId=940574918&_rerunOrigin=google&_acct=C000049823&_version=1&_urlVersion=0&_userid=984461&md5=112b05574e5ac5481a15297bb531da15])<br />
:Pattern Recognition Letters 28(13):1657-1666<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005, 2006, 2007) 0.552, 1.138 0.952 0.853<br />
<br />
;Ivan Villaverde, Alicia d'Anjou, M. Graña<br />
:''Morphological Neural Networks and Vision Based Simultaneous Localization and Mapping''<br />
:Integrated Computer-Aided Engineering 14(4):355-363<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.444, JCR 2006 0.236, JCR 2007 0.113, JCR 2008 0.617<br />
<br />
;Toro, C. / Posada, J / Oyarzun, J / Falcón, J<br />
: Supporting the CAD Structural Design Process with knowledge based tools, <br />
:Journal of Cybernetics and systems, <br />
:ISBN 1087-6553 (electronic) 0196-9722 (paper), Taylor and Francis publishers, 2007.<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.681, JCR 2006 0.964, JCR 2007 0.655<br />
<br />
;Sanin, C. / Szczerbicki, E. / Toro, C. <br />
: An OWL Ontology of Set of Experience Knowledge Structure <br />
: Journal of Universal Computer Science , Volume 13, number 2, pages 209-223, 2007<br />
<br />
; EKAITZ ZULUETA GUERRERO; PEDRO MARIA IRIONDO BENGOA; JOSE MANUEL LOPEZ GUEDE; Ander Etxeberria <br />
: Entropy Analysis for Stochastic System Control<br />
: INTERNATIONAL JOURNAL OF FACTORY AUTOMATION, ROBOTICS AND SOFT COMPUTING 2(2): 88-92<br />
<br />
==2006==<br />
<br />
;F.J. Torrealdea, A. d'Anjou, Manuel Graña, C. Sarasola<br />
:''Energy aspects of the synchronization of model neurons''<br />
: Physical Review E 74:011905<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2006 2.438<br />
<br />
;Toro, C. Posada, J Wundrak, S Stork, A<br />
: Improving Virtual Reality Applications in CAD through Semantics,<br />
:The International Journal of Virtual Reality, 2006, volume 5, Number 4, pages 39-46<br />
<br />
;Posada, J. / Wundrak, S. / Toro, C. / Stork, A. <br />
: Using Ontologies and STEP standards for the semantic simplification of CAD models in different engineering domains <br />
: Journal of Applied Ontology, Volume 1, Number 3-4/2006, pp. 263-279<br />
<br />
==2005==<br />
<br />
; Gurutze Arzamendi, Alicia d'Anjou, Manuel Graña, José R. Leiza, José M. Asua<br />
: ''Model reduction in emulsion polymerization using hybrid first principles/artificial neural networks models 2a Long Chain Branching Kinetics''<br />
: Macromolecular Theory and Simulations 14:125-132<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 1.544<br />
<br />
; C. Sarasola, A. d'Anjou, F.J. Torrealdea, Manuel Graña<br />
: ''Minimization of the energy flow in the synchronization of nonindentical chaotic systems''<br />
: Physical Review E 72:026223<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 2.418<br />
<br />
;C. Sarasola, , A. d'Anjou, F. J. Torrealdea and A. Moujahid<br />
: ''Energy-like functions for some dissipative chaotic systems.'' <br />
: Int. J. Bifurcation and Chaos 15(8), 2507-2521<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.845<br />
<br />
; A. d'Anjou, C. Sarasola, , F. J. Torrealdea. <br />
: ''On the characterization of different synchronization stages by energy considerations.''<br />
: Journal of Physics: Conference Series, 23, 238–251<br />
<br />
;Blanca Cases and Manuel Alfonseca<br />
:Towards a proof of the decidability of the momentary stagnation of the growth function of D0L systems<br />
:Theoretical Computer Science, Volume 341, Issues 1-3, 5 September 2005, Pages 247-262<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.743<br />
<br />
;Posada, J. / Wundrak, S. / Toro, C. / Stork, A. <br />
: Using Ontologies and STEP standards for the semantic simplification of CAD models in different engineering domains <br />
: Journal of Applied Ontology, Volume 1, Number 3-4/2006, pp. 263-279<br />
<br />
==2004==<br />
<br />
; M. Graña, J. Gallego, C. Hernandez<br />
: ''A Single Individual Evolutionary Strategy for Endmember Search in Hyperspectral Images.''<br />
:Information Sciences, Int. J 161(3-4):181-197<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2003, 2005) 0.264, 0.447, 0.723<br />
<br />
;B. Raducanu, Manuel Graña, F.X. Albizuri, A. d'Anjou<br />
: ''A Probabilistic Hit-and-Miss Tranform for Face Localization''<br />
:Pattern Análisis and Applications 7:117-127<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 0.803<br />
<br />
;Elsa Fernandez, Manuel Graña, Jesús Ruiz-Cabello<br />
: ''On a Gradient Based Evolution Strategie For Parametric Illumination Correction''<br />
:Electronics Letters 40(9):531-532<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 0.968<br />
<br />
;Cecilia Sarasola, Francisco J. Torrealdea, Alicia d'Anjou, A. Moujahid, Manuel Graña<br />
: ''Energy balance in feedback synchronization of chaotic systems''<br />
: Physical review E 69-011606<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 2.352<br />
<br />
==2003==<br />
<br />
; F. Xabier Albizuri, Manuel Graña, Bogdan Raducanu <br />
:Statistical transmission delay guarantee for nonreal-time traffic multiplexed with real-time traffic<br />
:Computer Communications 26 (2003) 1365–1375<br />
: Indicadores de calidad, JCR (2005) 0.556 (2009) 0.933<br />
<br />
; M. Graña, P. Sussner, G.X. Ritter<br />
: [[media:Grana-sussner-ritter-2003-mathware.pdf|Innovative Applications of Associative Morphological Memories]]<br />
: Mathware & Soft Computing 10(3):155-168<br />
: [http://ic.ugr.es/Mathware/index.php/Mathware/issue/view/6 journal web page]<br />
<br />
;A. d'Anjou, F. J. Torrealdea, J.R. Leiza, J.M. Asua, G. Arzamendi <br />
: ''Model reduction in emulsion polymerization using Hybrid First-Principles/Artificial Neural Networks models''<br />
: Macromolecular Theory and Simulation 12:42-56<br />
: indicadores de calidad, JCR (2005) 1.544 (2006) 1.073 (2007) 1.792 (2008) 1.912 (2009) 1.683<br />
<br />
; C. Sarasola, F.J. Torrealdea, A. d'Anjou, A. Moujahid and M. Graña<br />
: ''Feedback synchronization of chaotic systems''<br />
: Int. J. Bifurcation and Chaos 13(1):177-191<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.014<br />
<br />
;B. Raducanu, M. Graña, F.X. Albizuri<br />
: ''Morphological Scale Spaces and Associative Morphological Memories: Results on Robustness and Practical Applications''<br />
: Journal of Mathematical Imaging and Vision 9(2):113-131<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2003, 2005) 0.617,2.197<br />
<br />
;C. Sarasola, F.J. Torrealdea, A. d’Anjou, A. Moujahid, M. Graña,<br />
: ''Nonzero error synchronization of chaotic systems via dynamic coupling''<br />
: Physica D 177(1-4):39-49<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2002,2003:1.144,1.014<br />
<br />
;R. Perez de Alejo, J. Ruiz-Cabello, M. Cortijo, I. Rodriguez, I. Echave, J. Regadera, J. Arrazola, P. Avilés, P. Barreiro, D. Gargallo, M. Graña<br />
: ''Computer- Assisted Enhanced Volumetric Segmentation Magnetic Resonance Imaging Data Using a Mixture of Artificial Neural Networks''<br />
: Magnetic Resonance Imaging 21:901-912<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.420<br />
<br />
; JOSE MARIA GONZALEZ DE DURANA GARCIA; TEODORO RICO PASTRANA; EKAITZ ZULUETA GUERRERO<br />
: HYBRID MODELING OF OPEN LOOP DC-DC CONVERTERS.<br />
: FACING 11(2): 41--47<br />
<br />
==2002==<br />
<br />
;C. Sarasola, F.J. Torrealdea, A. d'Anjou, M. Graña<br />
: ''Cost of synchronizing different chaotic systems''<br />
: Mathematics and Computers in Simulation 58:309-327<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2005): 0.253,0.554<br />
<br />
; Jesús Ruiz-Cabello, Javier Regadera, Carmen Santisteban, Manuel Graña, Rigoberto Pérez de Alejo, Imanol Echave, Pablo Avilés, Ignacio Rodriguez, Inmaculada Santos, Domingo Gargallo, Manuel Cortijo<br />
: ''Monitoring actute inflammatory processes in the mouse muscle by MR imaging and spectroscopy: a comparision with pathological results''<br />
: NMR in Biomedicine 15:204-214<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2002,2005) 2.160, 2.469<br />
<br />
==2001==<br />
<br />
; B. Raducanu, M. Graña, F.X. Albizuri, A. D'Anjou<br />
: ''Face localization based on the morphological multiscale fingerprints''<br />
: Pattern Recognition Letters 22:359-371<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005) 0.552, 1.138<br />
<br />
;A.I. Gonzalez, M. Graña, J. Ruiz-Cabello, A. d'Anjou<br />
: ''Experimental results of an Evolution-based Adaptation Strategy for VQ Image Filtering'' [[media:IS2001_Evolution_VQfilter.pdf|pdf]]<br />
: Information Sciences, Int. J. 133 (3-4):249-266<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2003, 2005) 0.264, 0.447, 0.723<br />
<br />
; M.C. Hernandez, F.X Albizuri, A. d'Anjou, M. Graña, F.J. Torrealdea<br />
: ''Efficient solution of MAX-SAT and SAT via higher order Boltzmann Machines''<br />
: Investigacion Operacional 22(1):67-78<br />
:Indicadores de calidad (Índice de Impacto o similares): <br />
:Editorial y Lugar de publicación: Dept. Matematica Aplicada, Fac. Matematica y Computación, Universidad de la Habana<br />
<br />
;Israel Rebollo, Manuel Graña y Carmen Hernández<br />
:APLICACION DE ALGORITMOS ESTOCASTICOS DE OPTIMIZACION AL PROBLEMA DE LA DISPOSICION DE OBJETOS NO-CONVEXOS. [[http://rev-inv-ope.univ-paris1.fr/files/22201/IO-22201-11.pdf]]<br />
: Investigacion Operacional 22(2):184-192<br />
:Indicadores de calidad (Índice de Impacto o similares): <br />
:Editorial y Lugar de publicación: Dept. Matematica Aplicada, Fac. Matematica y Computación, Universidad de la Habana<br />
<br />
; A. d'Anjou,C. Sarasola, F.J. Torrealdea, R. Orduna, M. Graña<br />
: ''Parameter adaptive identical synchronization disclosing Lorenz chaotic mask''<br />
: Physical Review E E63-046213<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 2.202, (JCR 2002 2.397)<br />
<br />
; S. O. Anchorena, B. Cases<br />
: ''Modeling Chaotic Series by Simple Eco-Grammar Systems with Reproduction, Death and Maturation of Agents.''<br />
: Grammars, vol. 6 num. 3, pp. 155-168 (2003)<br />
: EE: http://www.springerlink.com/content/n68251124147700r/<br />
<br />
==2000==<br />
<br />
;A.I. Gonzalez, M. Graña, F.X. Albizuri, A. D'Anjou, F.J. Torrealdea<br />
: A Near Real-Time Evolution-based Adaptation Strategy for Dynamic Color Quantization of Image Sequences [[media:IS2000_Evolution_CQ_image_sequence.pdf|pdf]]<br />
: Information Sciences, Int. J. 122:161-183<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2003, 2005) 0.447, 0.723<br />
<br />
;J. Ruiz Cabello, I Rodriguez, P. Avilés, M. Graña, I. Echave, J. Regadera, D. Gargallo, M. Cortijo<br />
: Magnetic resonance imaging to monitor the biology of inflammation<br />
: European Biophysics Journal 29(4-5):363<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2005) 1.917,1.811 <br />
:ISSN: 0175-7571<br />
<br />
;I Rodriguez, M. Graña, I. Echave, P. Barreiro, M. Cortijo, J. Ruiz Cabello<br />
: MR image processing using neural networks and vector quantization<br />
: Magnetic Resonance Materials in Physics, Biology and Medicine (MAGMA) 11 (supl. 1):143<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.836<br />
<br />
;F.X. Albizuri, A.I. Gonzalez, M. Graña, A. D'Anjou<br />
: ''Neural learning for distributions on categorical data''[[media:Albizuri2000_Neural_learning.pdf|pdf]]<br />
: Neurocomputing 34:1-9<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005) 0.534, 0.790<br />
<br />
==1999==<br />
<br />
;J.A. Lozano, P. Larrañaga, M. Graña, F.X. ALbizuri<br />
: ''Genetic Algorithms: bridging the convergence gap''<br />
: Theoretical Computer Science 229:11-22<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.743<br />
<br />
;A.I. Gonzalez, M. Graña, M. Cottrell<br />
: ''Basic competitive neural networks as adaptive mechanisms for non-stationary color quantization'' [[media:Ai-gonzalez-neural-computing-appl-1999.pdf|pdf]]<br />
: Neural Computing and Applications 8: 347-367<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.403<br />
<br />
==1998==<br />
<br />
; A. I. Gonzalez, M. Graña<br />
: ''Una estrategia evolutiva para clustering no estacionario''<br />
: Inteligencia Artificial, Revista Iberoamericana de Inteligencia Artificial, 2(5): 68-73<br />
<br />
;A. I. Gonzalez, M. Graña, A. D'Anjou, F.X. Albizuri, F.J Torrealdea<br />
: ''A comparison of experimental results with a Evolution Strategy and Competitive Neural Networks for near real-time Color Quantization of image sequences'' [[media:AppInt1998_Evol_CNN_CQ_sequences.pdf|pdf]]<br />
: Applied Intelligence 8 (1): 43-51<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 0.9<br />
<br />
==1997==<br />
<br />
; M. Graña, A. D´Anjou, F.J. Torrealdea<br />
: User expectations for the intelligent blackboard [[media:M-grana-displays-1997.pdf|pdf]]<br />
: Displays 17 (3-4): 143-146<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor: 0.947, JCR 2007 1.179<br />
<br />
; A. I. Gonzalez, M. Graña, A. D´Anjou, F.X. Albizuri, M. Cottrell<br />
: A sensitivity analysis of the Self Organizing Map as an Adaptive One-pass Non-stationary Clustering algorithm: the case of Color Quantization of image sequences [[media:NPL1997_SOM_onepass_nonstat_clustering.pdf|pdf]]<br />
: Neural Processing Letters 6: 77-89<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 0.701<br />
<br />
; F.X. Albizuri, A. D'Anjou, M. Graña, P. Larrañaga<br />
: Structure of the high-order Boltzmann Machine from Independence Maps<br />
: IEEE trans. Neural Networks 8 (6): 1351-1358<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 2.205<br />
<br />
; M. Graña, A. D'Anjou , F.X. Albizuri, M. Hernandez, F. J. Torrealdea, A.I. Gonzalez<br />
: Experiments of fast learning with High Order Boltzmann Machines [[media:Grana-HOBM-appl-int-1997.pdf|pdf]]<br />
: Applied Intelligence 7 (4): 287-303<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 0.569<br />
<br />
==1996==<br />
<br />
; F.X. Albizuri, A. D'Anjou , M. Graña,J.A. Lozano<br />
: Convergence properties of High-Order Boltzmann Machines<br />
: Neural Networks 9(9): 1561-1567<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 1.665<br />
<br />
;M. Graña, A. D'Anjou , F.X. Albizuri, J.A. Lozano, P. Larrañaga, Y. Yurramendi, M. Hernandez, J.L. Jimenez, F. J. Torrealdea, M. Poza, A.I. Gonzalez<br />
: Experimentos de aprendizaje con Máquinas de Boltzmann de alto orden [[media:Inf-y-automatica-exp-HOBM-96.pdf|draft]]<br />
: Informática y Automática 29(4): 42-57<br />
<br />
==1995==<br />
<br />
;A. I. González , M. Graña - A. D'Anjou<br />
: An analysis of the GLVQ algorithm [[media:IEEENN95_analysis_GLVQ.pdf|pdf]]<br />
: IEEE Transactions on Neural Netwoks 6 (4): 1012-1016<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 2.205<br />
<br />
; F. X. Albizuri - A. D'Anjou - M. Graña - F. J. Torrealdea - M. C. Hernández<br />
: The high order Boltzmann machine: learned distribution and topology<br />
: IEEE Transactions. on Neural Networks 6 (3): 767-770<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 2.205<br />
<br />
; M. Graña - A. D'Anjou - A. I. González - F. X. Albizuri - M. Cottrell<br />
: Competitive stochastic neural networks for vector quantization of images [[media:Neurocomputing95_CSNN_VQ.pdf|pdf]]<br />
: Neurocomputing 7: 187-195<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 0.790<br />
<br />
==1993==<br />
<br />
;Alicia D'Anjou - Manuel Graña - Fco. Javier Torrealdea - Mª Carmen Hernández<br />
: Solving satisfiability via Boltzmann machines [[media:Danjou-pami-1993.pdf|pdf]]<br />
: IEEE Transactions on pattern analysis and machine intelligence, 15:514-521<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 2.923<br />
<br />
==1992==<br />
<br />
;Alicia D'Anjou - Manuel Graña - Fco. Javier Torrealdea - Mª Carmen Hernández<br />
: Máquinas de Boltzmann para la resolución del problema de la satisfacibilidad en el cálculo proposicional<br />
: Revista Española de Informática y Automática 24: 40-49<br />
<br />
==1987==<br />
<br />
;Luis M. Alonso - Manuel Graña<br />
: Formal techniques and concurrent systems<br />
: Communications ACM 30: 752-753<br />
Indicadores de calidad (Índice de Impacto o similares): ISI JCR (2008) 2.646<br />
<br />
==1986==<br />
<br />
;Manuel Graña - Fco. Javier Torrealdea<br />
: Hierarchically structured Systems [[media:Grana-torrealdaea-1986.zip|scan]] [[media:Grana-torrealdea-1986.pdf|scan compressed]]<br />
: European Journal of Operational Research 25:20-26<br />
Indicadores de calidad ISI JCR: (2008) 1.627, <br />
<br />
; Fco. Javier Torrealdea - Manuel Graña - Fernando Ferreres<br />
: A comparison between stochastic and deterministic simulation<br />
: Advances in Modelling and Simulation (AMSE press) 5:15-32<br />
:Indicadores de calidad (Índice de Impacto o similares):<br />
<br />
; T. Alvarez - J. J. Dolado - M. Graña - I. Sukia - F. J. Torrealdea<br />
: Una versión de GPSS<br />
: Revista Española de Informática y Automática 19:45-59<br />
: Indicadores de calidad (Índice de Impacto o similares):<br />
<br />
==1984==<br />
<br />
;Fco. Javier Torrealdea - Manuel Graña<br />
: Some ideas for a history dynamics model.<br />
: Dynamica 10: 103-106 [http://www.systemdynamics.org/dynamica/articles/102/5.pdf]<br />
:Originalmente editada por el Bradford System Dynamics group fue posteriormente asumida por la System Dynamics Society y convertida en la actual The International Journal of System Dynamics, manteniendo los fondos bibliograficos asociados a Dynamica.<br />
: [http://www.systemdynamics.org/conferences/1983/proceed/parallel-vol2/torre913.pdf la publicación en la conferencia de System Dynamics que dió lugar al artículo]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Revistas&diff=17742
Revistas
2015-04-25T13:21:57Z
<p>Chyzhyk.darya: /* online first */</p>
<hr />
<div>[[media:Revistas-GIC-1984-2009.bib.zip|bib de revistas hasta 2009]]<br />
==submitidos sin decision==<br />
<br />
<br />
<br />
; Ion Marques, Manuel Graña, and Miguel Velez-Reyes<br />
:Towards human skin detection via hyperspectral image unmixing<br />
: GRSL<br />
: JCR (2013) 1.809 (Q2 EEE, Q2 GEOCHEMISTRY & GEOPHYSICS, Q2 ISPT, Q2 remote sensing)<br />
<br />
; Dacosta-Aguayo R, Graña M, Falcón C, Fernández-Andújar M, López-Cancio E, Cáceres C, Bargalló N, Barrios M, Clemente IC, Torán Pera, Forés Rosa, Dávalos A, Tibor A and Mataró M<br />
:Multimodal imaging of the healthy contralesional hemisphere provides insight into neural, functional and cognitive recovery in ischemic stroke patients<br />
:<br />
<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br />
:Further Results Learning Hose Transport Control with Q-learning<br />
: Journal of Physical Agents (aceptado con revisiones)<br />
<br />
<br />
; Borja Ayerdi, Manuel Grana<br />
: Adaptive Hybrid Extreme Rotation Forest<br />
: Neural Processing Letters<br />
: JCR 2013 1.237 (Q2 CSAI)<br />
<br />
<br />
; Borja Ayerdi, Bartosz Krawczyk, Manuel Graña, Michal Wozniak<br />
: Combining One-Class Classifiers for Hyperspectral Image Segmentation<br />
: Fundamenta Informaticae<br />
<br />
==aceptados ==<br />
<br />
;Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzherimer Research, (accepted)<br />
: JCR (2013) 3.796 (Q1 Clin Neurol, Q2 Neurosciences)<br />
<br />
<br />
;Borja Fernandez-Gauna; Ismael Etxeberria-Agiriano; Manuel Graña<br />
:Learning Multirobot Hose Transportation and Deployment by Distributed Round-Robin Q-Learning<br />
: PlosOne (aceptado 18 de marzo)<br />
: JCR (2012) 3.730, (Q1 mult. sciences) (2013) 3.534 (Q1 mult. sci.)<br />
<br />
;Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br />
:Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification<br />
:Neurocomputing (aceptado 6 de marzo)<br />
<br />
; Borja Ayerdi, Manuel Graña<br />
: Hyperspectral Image Nonlinear Unmixing and Reconstruction by ELM Regression Ensemble<br />
: Neurocomputing<br />
<br />
;I. Macía, M. de Blas, J.H. Legarreta, L. Kabongo, O. Hernández, J.M. Egaña, J.I. Emparanza, A. García-Familiar, M. Graña<br />
:Standard and Fenestrated Endograft Sizing in EVAR Planning: Description and Validation of a Semi-automated 3D Software<br />
: Computerized Medical Imaging and Graphics [http://www.journals.elsevier.com/computerized-medical-imaging-and-graphics/] (accept 16 enero 2015)<br />
: JC· 2013 1.496 (Q3 RNMMI)<br />
<br />
<br />
<br />
;J. David Nuñez-Gonzalez, Manuel Graña, Bruno Apolloni, <br />
:Reputation Features for Trust Prediction in Social Networks, <br />
:Neurocomputing (aceptado)<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Ion Marques, Manuel Graña, Anna Kamińska-Chuchmała, Bruno Apolloni, <br />
:An experiment of subconscious intelligent social computing on household appliances, <br />
:Neurcomputing (aceptado agosto 2014)<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Fernández-Andújar M, Doornink F, Dacosta-Aguayo R, Soriano-Raya JJ, Miralbell J, Bargalló N, López-Cancio E, Pérez de la Ossa N, Gomis M, Millán M, ;Barrios M, Cáceres C, Clemente I, Dávalos A, Mataró M <br />
: Remote thalamic microstructural abnormalities related to cognitive function in ischemic stroke patients <br />
: Neuropsychology (aceptado 4 de abril 2014)<br />
: JCR (2012): 3.477 (Q1)<br />
<br />
<br />
;Maria Mataró, Juan José Soriano-Raya, Jorge López-Olóriz, Júlia Miralbell, Rosalia Dacosta-Aguayo<br />
:CEREBROVASCULAR MARKERS IN LOWERED COGNITIVE FUNCTION<br />
:Journal of Alzheimer Disease, (accepted)<br />
:JCR (2013) 3.612 (Q1 clinical neu.)<br />
<br />
== online first==<br />
<br />
;Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
:Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (8 abril) [http://www.sciencedirect.com/science/article/pii/S0893608015000805]<br />
: DOI 10.1016/j.neunet.2015.04.002<br />
: JCR (2013) 2.076 (Q1 CSAI, Q3 Neurosciences)<br />
<br />
; Alexandre Savio, Manuel Graña<br />
:Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI<br />
:Neurocomputing (aceptado 10 enero 2015) [http://authors.elsevier.com/sd/article/S0925231215002970]<br />
: DOI 10.1016/j.neucom.2015.01.079<br />
<br />
;Lopez-Guede, Jose M.; Fernandez-Gauna, Borja; Graña, Manuel; Zulueta, Ekaitz; <br />
:Training Multi-agent systems by Q-learning: approaches and empirical results<br />
: Computational Intelligence [http://onlinelibrary.wiley.com/doi/10.1111/coin.12035/abstract]<br />
: DOI: 10.1111/coin.12035<br />
: JCR (2012) 1.000 (Q3 CSAI) (2013) 0.870<br />
<br />
;PAWEL KSIENIEWICZ, DARIUSZ JANKOWSKI, BORJA AYERDI, KONRAD JACKOWSKI, MICHAL WOZNIAK, MANUEL GRANA<br />
:A Novel Hyperspectral Segmentation Algorithm - Concept and Evaluation<br />
: Logic journal IGPL (aceptado noviembre 2014) [http://jigpal.oxfordjournals.org/content/early/2014/12/29/jigpal.jzu045.short]<br />
: JCR 2013 0.530 (Q2 Logic, Q3 Mathematics, Q4 MA)<br />
<br />
;Borja Fernandez-Gauna; Jose Manuel Lopez-Guede; Ismael Etxeberria-Agiriano; Igor Ansoategi; Manuel Graña<br />
:Reinforcement Learning endowed with safe veto policies to learn the control of L-MCRS<br />
:Information Sciences [http://www.sciencedirect.com/science/article/pii/S002002551500273X]<br />
: DOI 10.1016/j.ins.2015.04.005<br />
<br />
==2015==<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International Journal of Neural Systems 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] [http://www.worldscientific.com/doi/abs/10.1142/S0129065715500070?src=recsys&journalCode=ijns&]<br />
: JCR 2014 6.056 (Q1 CSAI)<br />
<br />
;A. Suberbiola, E. Zulueta, J.M. Lopez-Guede, I. Etxeberria-Agiriano, and M. Grana<br />
: Arm Orthosis/Prosthesis Movement Control Based on Surface EMG Signal<br />
: International Journal of Neural Systems 25(3):1550009 [http://www.worldscientific.com/doi/10.1142/S0129065715500094] (2015)<br />
: JCR 2014 6.056 (Q1 CSAI)<br />
<br />
; MANUEL GRAÑA, J. DAVID NUÑEZ-GONZALEZ, LEIRE OZAETA, ANNA KAMIŃSKA-CHUCHMAŁA<br />
:Experiments of Trust Prediction in Social Networks by Artificial Neural Networks [http://www.tandfonline.com/doi/full/10.1080/01969722.2015.1007725#.VRJqFkvXmlI]<br />
: Cybernetics and Systems Volume 46, Issue 1-2, 2015 pages 19-34<br />
: DOI:10.1080/01969722.2015.1007725<br />
<br />
; EIDER SANCHEZ, CARLOS TORO, MANUEL GRAÑA, CESAR SANIN, EDWARD SZCZERBICKI<br />
:Extended Reflexive Ontologies for the generation of clinical recommendations [http://www.tandfonline.com/doi/full/10.1080/01969722.2015.1007723#abstract]<br />
: Cyberntetics and Systems Volume 46, Issue 1-2, 2015 pages 4-18<br />
<br />
<br />
<br />
;Julián Estévez, Jose Manuel Lopez-Guede, Manuel Graña<br />
: Quasi-stationary State Transportation of a Hose with Quadrotors<br />
: Robotics and Automous Systems (aceptado 5 sept) Volume 63, Part 2, January 2015, Pages 187–194 [http://www.sciencedirect.com/science/article/pii/S0921889014001791]<br />
: JCR (2013) 1.105, (Q3 Robotics, Q3 CSAI, Q3 ACS)<br />
<br />
<br />
;M Graña, B Raducanu<br />
:Bioinspired and knowledge based techniques and applications<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 1–3<br />
:DOI 10.1016/j.neucom.2014.09.039<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Darya Chyzhyk, Manuel Graña<br />
:Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160<br />
: DOI 10.1016/j.neucom.2014.09.075<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña<br />
:An active learning approach for Stroke lesion segmentation on multimodal MRI data<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 26–36 [http://www.sciencedirect.com/science/article/pii/S0925231214012466]<br />
:DOI:10.1016/j.neucom.2014.01.077<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Borja Ayerdi, Ion Marqués, Manuel Graña<br />
:Spatially regularized semisupervised Ensembles of Extreme Learning Machines for hyperspectral image segmentation<br />
: Neurocomputing (aceptado 18 de enero 2014) Volume 149, Part A, 3 February 2015, Pages 373–386 [http://www.sciencedirect.com/science/article/pii/S0925231214011424] <br />
: JCR 2013 2.005 (Q1 CSAI)<br />
: DOI 10.1016/j.neucom.2014.01.068<br />
<br />
<br />
; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna,Jose Antonio Ramos-Hernanz<br />
:Single robot dynamics approximation by ELM for Reinforcement Learning for hose control<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 116–123<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br />
:A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data [http://www.sciencedirect.com/science/article/pii/S0925231214012454]<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 37–42<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Dacosta-Aguayo, Rosalia; Graña, Manuel; Iturria-Medina, Yasser; Fernández-Andújar, Marina; López-Cancio, Elena; Caceres, Cynthia; Bargallo, Nuria; Barrios, Maite; Clemente, Imma; Pera, Guillem; Fores, Rosa; Davalos, Antoni; Mataro, Maria<br />
:Impairment of Functional Integration of the Default Mode Network correlates with Cognitive Outcome at three months after Stroke<br />
: Human Brain Mapping Volume 36, Issue 2, February 2015, Pages: 577–590<br />
: DOI: 10.1002/hbm.22648<br />
: Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine & Medical Imaging); 23/252 (Neurosciences) (2013) 6.924 (Q1 Neuroimaging, Q1 RNMMI, Q1 Neurosciences)<br />
<br />
== 2014 ==<br />
<br />
;Eider Sanchez, Peng Wang, Carlos Toro, Cesar Sanin, Manuel Graña, Edward Szczerbicki, Eduardo Carrasco, Frank Guijarro and Luis Brualla<br />
:Decisional DNA for modeling and reuse of experiential-based clinical assessments in breast cancer diagnosis and treatment<br />
: Neurocomputing Volume 146, 25 December 2014, Pages 308–318 [http://www.sciencedirect.com/science/article/pii/S0925231214007826]<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Jose Manuel Lopez-Guede, Manuel Graña, Jesus Maria Larrañaga, Fernando Oterino<br />
: Educational innovation project in the field of Industrial Informatics <br />
: Procedia - Social and Behavioral Sciences, Volume 141, 25 August 2014, Pages 20–24<br />
: DOI 10.1016/j.sbspro.2014.05.006<br />
<br />
; Jose Manuel Lopez-Guede, Manuel Graña, Jesus Maria Larrañaga, Fernando Oterino<br />
: Retrospective Vision of a Long Term Innovative Experience<br />
: Procedia - Social and Behavioral Sciences, Volume 141, 25 August 2014, Pages 15–19<br />
: DOI 10.1016/j.sbspro.2014.05.005<br />
<br />
;Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró <br />
:Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study<br />
: Human Brain Mapping (aceptado 15 nov 2013) Volume 35, Issue 8, pages 3819–3831, August 2014 [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br />
: Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine & Medical Imaging); 23/252 (Neurosciences) (2013) 6.924 (Q1 Neuroimaging, Q1 RNMMI, Q1 Neurosciences)<br />
<br />
;Borja Fernández-Gauna; Igor Ansoategui; Ismael Etxeberria-Agiriano; Manuel Graña<br />
:Reinforcement Learning of ball screw feed drive controllers<br />
:Engineering Applications of Artificial Intelligence Volume 30, April 2014, Pages 107–117 [http://www.sciencedirect.com/science/article/pii/S0952197614000220]<br />
: JCR (2011) 1.665 (Q1 ENG) (2012) 1.625 (Q1 ENG, Q2 ACS, Q2 CSAI, Q2 EEE) (2013) 1.962 (Q1 ENG, Q2 ACS, Q2 CSAI, Q2 EEE)<br />
<br />
;Borja Ayerdi and Manuel Graña<br />
:Hybrid Extreme Rotation Forest <br />
: Neural Networks Volume 52, April 2014, Pages 33–42 [http://www.sciencedirect.com/science/article/pii/S0893608014000045]<br />
: JCR (2012) 1.927 (Q1 CSAI, Q3 NS) (2013) 2.076 (Q1 CSAI, Q3 NS)<br />
<br />
;Tuia, D. ; Merenyi, E. ; Jia, X. ; Grana-Romay, M.<br />
:Foreword to the Special Issue on Machine Learning for Remote Sensing Data Processing [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6804709]<br />
: Selected Topics in Applied Earth Observations and Remote Sensing, IEEE Journal of (Volume:7 , Issue: 4 ) pp. 1007 - 1011<br />
: JCR (2012) 2.874 (Q2 GP, Q1 ISPT, Q1 RS) (2013) 2.827 (Q2 GP, Q1 ISPT, Q1 RS, Q1 EEE)<br />
<br />
; Abdelmalik Moujahid, Alicia d'ANjou, Manuel Graña<br />
:Energy demands of diverse spiking cells from the neocortex, hippocampus and thalamus<br />
: Frontiers in Computational Neuroscience (2014) 8:41 [http://journal.frontiersin.org/Journal/10.3389/fncom.2014.00041/abstract]<br />
: DOI: 10.3389/fncom.2014.00041<br />
: JCR (2013) 2.233 (Q1 MCB, Q2 neurosciences)<br />
<br />
;Iker Mesa, Eider Sanchez, Carlos Toro, Javier Diaz, Arkaitz Artetxe, Manuel Graña, Frank Guijarro, Cesar Martinez, Jose Manuel Jimenez, Shabs Rajasekharan, Jose Antonio Alarcon, Alessandro De Mauro.<br />
:Design and Development of a Mobile Cardiac Rehabilitation System<br />
:Cybernetics and Systems: An International Journal, Volume 45 Issue 2 (2014), pp 92-108 [http://www.tandfonline.com/doi/full/10.1080/01969722.2014.874804#.UyF23OCEl48]<br />
:JCR (2012): 0.973 (Q3 CSC)<br />
<br />
;Israel Rebollo-Ruiz and Manuel Graña<br />
:An empirical evaluation of Gravitational Swarm Intelligence for Graph Coloring algorithm<br />
: Neurocomputing Volume 132, 20 May 2014, Pages 79–84 [http://www.sciencedirect.com/science/article/pii/S0925231213011041]<br />
: JCR (2011) 1.580 (Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Rosalia Dacosta-Aguayo; Manuel Graña; Marina Fernandez-Andujar; Elena López-Cancio; Cynthia Cáceres; Nuria Bargallo; Maite Barrios; Imma Clemente; Antoni Dávalos; Auer Tibor; Maria Mataró<br />
:Structural integrity of the contralesional hemisphere predicts cognitive impairment in ischemic stroke at three months<br />
: PLosONe January 2014 | Volume 9 | Issue 1 | e86119 [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0086119]<br />
: JCR (2012) 3.730, (Q1 mult. sciences) (2013) 3.534 (Q1 mult. sci.)<br />
<br />
; Ramon Moreno, Francesco Corona, Amaury Lendasse, Manuel Grana and Lenio Galvao<br />
: Extreme Learning Machines for Soybean classification in remote sensing Hyperspectral Images<br />
: Neurocomputing Volume 128, 27 March 2014, Pages 207–216 [http://dx.doi.org/10.1016/j.neucom.2013.03.057]<br />
: JCR (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Josu Maiora; Borja Ayerdi; Manuel Graña<br />
: Random forest active learning for AAA thrombus segmentation in computed tomography angiography images<br />
: Neurocomputing Volume 126, 27 February 2014, Pages 71–77 [http://www.sciencedirect.com/science/article/pii/S0925231213006978]<br />
: (2011) JCR 1.580 (Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Michal Wozniak,, Manuel Graña, Emilio Corchado, <br />
: A Survey of Multiple Classifier System as Hybrid Systems <br />
: Information Fusion Volume 16, March 2014, Pages 3–17 [http://www.sciencedirect.com/science/article/pii/S156625351300047X]<br />
: JCR (2011) 1.467 (Q2 CSAI, Q1 CSTM) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
; Michal Wozniak, Emilio Corchado, Manuel Graña<br />
:Guest Editorial: Hybrid Intelligent Fusion Systems<br />
: Information Fusion Volume 16, March 2014, Pages 2<br />
: (2011) JCR 1.467 (Q1 CSTM, Q2 CSAI) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
;Carmen Hernández , Leónia Nunes , Domingos Lopes , Manuel Graña <br />
:Data Fusion for high spatial resolution LAI estimation <br />
:Information Fusion Volume 16, March 2014, Pages 59–67 [http://www.sciencedirect.com/science/article/pii/S1566253512000395]<br />
: JCR (2010) 1.621 (2011) 1.467 (Q1 CSTM, Q2 CSAI) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
;B Ayerdi, J Maiora, A d'Anjou, M Graña<br />
:Applications of Hybrid Extreme Rotation Forests for image segmentation<br />
:International Journal of Hybrid Intelligent Systems 11 (1), 13-24<br />
<br />
;Noelia Oses, Fadi Dornaika, and Abdelmalik Moujahid<br />
:Image-based delineation and classification of built heritage masonry [http://www.mdpi.com/2072-4292/6/3/1863]`<br />
:Remote Sens. 2014, 6(3), 1863-1889; doi:10.3390/rs6031863<br />
<br />
==2013==<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna and Manuel Grana<br />
:"State-action value modeled by ELM in Reinforcement Learning for Hose Control Problems" , <br />
: International Journal of Uncertainty Fuzziness and Knowledge-Based Systems 21, supp02, 99-116 [http://www.worldscientific.com/doi/abs/10.1142/S0218488513400199]<br />
: JCR (2011) 1.781 (Q2 CSAI) (2012) 0.886 (Q3 CSAI)<br />
<br />
;Miguel A. Veganzonesa, Mihai Datcu, Manuel Graña,<br />
: Further results on dissimilarity spaces for hyperspectral images RF-CBIR<br />
: Pattern Recognition Letters Volume 34, Issue 14, 15 October 2013, Pages 1659-1668 [http://www.sciencedirect.com/science/article/pii/S0167865513002237]<br />
: JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
;Israel Rebollo-Ruiz and Manuel Graña Romay <br />
:Swarm Graph Coloring for the identification of user groups on ERP logs <br />
: Cybernetics and systems Volume 44, Issue 6-7: 489–504, (2013) [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.803891#.UhuA7Ra5fyI]<br />
: JCR 2012 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI) : JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
;Eider Sanchez, Carlos Toro, Arkaitz Artetxe, Manuel Graña, Cesar Sanin, Edward Szczerbicki, Eduardo Carrasco and Frank Guijarro<br />
:Bridging challenges of Clinical Decision Support Systems with a semantic approach . A case study on breast cancer.<br />
: Pattern Recognition Letters 34 (2013), pp. 1758-1768 [http://authors.elsevier.com/sd/article/S016786551300144X] <br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI) : JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
<br />
;Edward Szczerbicki, Manuel Graña, Jorge Posada & Carlos Toro <br />
: CURRENT RESEARCH ADVANCES AND IMPLEMENTATIONS IN SMART KNOWLEDGE-BASED SYSTEMS: PART I<br />
: Cybernetics and Systems 44(2-3):95-97 [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762247]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Edward Szczerbicki, Manuel Graña, Jorge Posada & Carlos Toro <br />
: CURRENT RESEARCH ADVANCES AND IMPLEMENTATIONS IN SMART KNOWLEDGE-BASED SYSTEMS: PART II<br />
: Cybernetics and Systems 44(2-3):184-186[http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762254]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Iñigo Barandiaran, Manuel Graña, Marcos Nieto<br />
:An Empirical Evaluation of Interest Point Detectors<br />
:Cybernetics and Systems 44(2-3):98-117 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2013.762232]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
<br />
;Arkaitz Artetxe, Eider Sanchez, Carlos Toro, Cesar Sanin, Edward Szczerbick, Manuel Graña, Jorge Posada<br />
: Impact of Reflexive Ontologies in Semantic Clinical Decision Support Systems [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762256]<br />
:Cybernetics and Systems 44(2-3):187-203 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2013.762232]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Borja Fernandez-Gauna; Ion Marques; Manuel Graña<br />
:Undesired State-Action Prediction in Multi-Agent Reinforcement Learning. Application to Multicomponent Robotic System control<br />
: Information Sciences (2013) 232:309–324 [http://www.sciencedirect.com/science/article/pii/S0020025513000133]<br />
: (2011) JCR 2.833 (Q1 CSIS) (2012) 3.643 (Q1 CSIS) (2013) 3.893<br />
<br />
;Maite Termenon, Manuel Grana, Barros-Loscertales Alfonso and Cesar Avila<br />
:"Extreme Learning Machines for feature selection and classification of cocaine dependent patients on structural MRI data " , <br />
: Neural Processing Letters December 2013, Volume 38, Issue 3, pp 375-387 [http://link.springer.com/article/10.1007/s11063-013-9277-x]<br />
: JCR (2012) 1.240 (Q2 CSAI) 2013 1.237 (Q2 CSAI)<br />
<br />
<br />
;M. Termenon, M. Graña, A. Besga, J. Echeveste, A. Gonzalez-Pinto <br />
:Lattice Independent Component Analysis feature selection on Diffusion Weighted Imaging for Alzheimer’s Disease Classification <br />
: Neurocomputing (2013) Volume 114, 19 August 2013, Pages 132–141 [http://dx.doi.org/10.1016/j.neucom.2012.08.044]<br />
: JCR (2011) 1.580: (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) <br />
<br />
;Eloy Irigoyen, , Gorka Miñano<br />
:A NARX neural network model for enhancing cardiovascular rehabilitation therapies<br />
: Neurocomputing (2013) 109(3):9–15<br />
: JCR (2010) 1.442 (2011) 1.580 (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Ion Marques, Manuel Graña<br />
: Fusion of lattice independent and linear features improving face identification<br />
: Neurocomputing Volume 114, 19 August 2013, Pages 80–85<br />
: JCR (2011) 1.580 : (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; M. Graña, A.I Gonzalez-Acuña<br />
: Learning Parsimonious Dendritic Classifiers<br />
: Neurocomputing (2013) 109(3):3–8 [http://dx.doi.org/10.1016/j.neucom.2012.03.025] [http://www.sciencedirect.com/science/article/pii/S0925231212006765]<br />
: JCR (2010) 1.442 (2011) 1.580 (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; Alexandre Savio, Manuel Graña<br />
: Deformation Based Feature Selection for Computer Aided Diagnosis of Alzheimer's Disease<br />
: Expert Systems With Applications 40 (2013), pp. 1619-1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009]<br />
: JCR (2011) 2.203 (Q1 in CSAI) (2012) (Q2 CSAI, Q1 EEE, Q1 ORMS) (2013) 1.965 (Q1 CSAI, Q2 EEE, Q1 ORMS)<br />
<br />
; F. Dornaika, A. Moujahid, and B. Raducanu<br />
: Facial expression recognition using tracked facial actions: Classifier performance analysis<br />
: Engineering Applications of Artificial Intelligence 26(1), pp.467-477 (2013).<br />
: 5-Year Impact Factor: 1.844<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br />
:Transfer Learning with Partially Constrained Models: application to reinforcement learning of linked multicomponent robot system control<br />
: Robotics and Autonomous Systems 61 (7) (2013):694–703 [http://dx.doi.org/10.1016/j.robot.2012.07.020]<br />
: JCR (2011) 1.056 (Q2 ACS, Q3 CSAI, Q3 Rob.) (2012) 1.156 (Q3 ACS, Q3 CSAI, Q2 Robotics) (2013) 1.105 (Q3 ACS, Q3 CSAI, Q3 Robotics)<br />
<br />
; Manuel Graña, Adrian Agreda<br />
:Trust models and applications in communication and multi-agent systems<br />
: International Journal of Knowledge-based and Intelligent Engineering Systems 17 (2013) 187–193<br />
<br />
;Diego Acosta · John Congote · Iñigo Barandiaran · Oscar Ruiz · Alejandro Hoyos · Manuel Graña<br />
:Tuning of Adaptive Weight Depth Map Generation Algorithms Exploratory Data Analysis and Design of Computer Experiments (DOCE)<br />
:Journal of Mathematical Imaging and Vision 47:3-12 [http://www.springer.com/alert/urltracking.do?id=Lcb6681Ma53e73Sa]<br />
: JCR (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767 (Q2 CSAI, Q1 CSSE, Q1 MA) (2013) 2.330 (Q1 CSAI, Q1 CSSE, Q1 MA) <br />
<br />
;Bosaghzadeh, A., Moujahid, A., & Dornaika, F. <br />
:Parameterless local discriminant embedding. <br />
:Neural Processing Letters August 2013, Volume 38, Issue 1, pp 53-67<br />
: JCR (2012) 1.240 2013 1.237 (Q2 CSAI)<br />
<br />
== 2012 ==<br />
<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernadez-Gauna, Manuel Graña, Fernando Oterino and Jesus Maria Larrañaga <br />
:Effect of the Lambda Parameter in Dynamic Matrix Controllers Performance<br />
: Journal of Computer and Information Technology Vol.2, No.2, pp. 81-88<br />
<br />
;A. Moujahid, A. D'Anjou<br />
:Metabolic efficiency with fast spiking in the squid axon<br />
: Front. Comput. Neurosci. 6:95. doi: 10.3389/fncom.2012.00095 [http://www.frontiersin.org/Computational_Neuroscience/10.3389/fncom.2012.00095/abstract]<br />
: 5-Year Impact Factor: 2.147<br />
<br />
;R. Moreno , D. M. Ramik , M. Graña , and K. Madani<br />
:Image Segmentation on the Spherical Coordinate Representation of the RGB Color Space [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?reload=true&arnumber=6407287]<br />
:IET Image Processing 6(9):1275 - 1283<br />
: jCR (2010) 0.862 (2011) 0.639 (Q3 EEE) (2012) 0.895 (Q3 EEE)<br />
<br />
; A. Moujahid, A. D'Anjou, B. Cases<br />
: Community structure in real-world networks from a non-parametrical synchronization-based dynamical approach. <br />
: Chaos, Solitons and Fractals: the interdisciplinary journal of Nonlinear Science, and Nonequilibrium and Complex Phenomena<br />
: Volume 45, Issues 9–10, September–October 2012, Pages 1171–1179 <br />
: JCR 5-Year Impact Factor: 1.41<br />
<br />
; A. Besga, M. Termenon, M. Graña, J. Echeveste, J. M. Perez, A. Gonzalez-Pinto<br />
: "Discovering Alzheimer's disease and bipolar disorder white matter effects building computer aided diagnostic systems on brain diffusion tensor imaging features" [http://www.sciencedirect.com/science/article/pii/S0304394012006799].<br />
: '''Neuroscience Letters''', Volume 520, Issue 1, 27 June 2012, Pages 71–76.<br />
: JCR (2011) 2.105 (Q3 Neurosciences) (2012) 2.026 (Q3 Neurosciences)<br />
<br />
;Manuel Graña, Miguel A. Veganzones<br />
: [http://www.sciencedirect.com/science/article/pii/S0031320312001483 "An Endmember-based distance for content based hyperspectral image retrieval."]<br />
: Pattern Recognition 49(9), pp 3472-3489. September 2012. [http://dx.doi.org/10.1016/j.patcog.2012.03.015 doi]<br />
: JCR (2010) 2.607 (2011) 2.292 (Q1 CSAI, Q1 EEE) (2012) 2.632<br />
<br />
;Ion Marques, Manuel Graña<br />
:Face recognition with Lattice Independent Component Analysis and Extreme Learning Machines<br />
: Soft Computing, 2012,Volume 16, Issue 9, pp 1525-1537 [http://dx.doi.org/10.1007/s00500-012-0826-4 DOI]<br />
: JCR (2010) 1.512 (2011) 1.880 (Q2 CSAI, Q1 CSIA) (2012) 1.124 (Q3 CSAI, Q3 CSIA)<br />
<br />
; Israel Rebollo, Manuel Graña, Blanca Cases<br />
:On the effect of spatial percolation on the convergence of Graph Coloring Boid Swarm<br />
: Int. Journal on Artificial Intelligence Tools (2012) 21(6): 1250015 [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/87/IJAIT-convergence-percolation-boids-2010-12-26-submitted.zip] [http://www.worldscientific.com/doi/abs/10.1142/S0218213012500157]<br />
: JCR (2010) 0.330 (2011) 0.217 (2012) 0.250 (Q4 CSAI, Q4 CSIA)<br />
<br />
; Jbabdi S, Sotiropoulos SN, Savio AM, Graña M, Behrens TE<br />
: Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems<br />
: Magnetic Resonance in Medicine (2012) 68(6):1846-1855 [http://onlinelibrary.wiley.com/doi/10.1002/mrm.24204/abstract]<br />
: ISSN 0740-3194<br />
: JCR (2010): 3.268 (2011) 2.964 (2012) 3.267 (Q1 RNMMI)<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br />
: Improving the control of single robot hose transport <br />
: Cybernetics and Systems: An International Journal, 2012, 43:4, 261-275<br />
: JCR (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
<br />
;Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
:Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: [http://dx.doi.org/10.1016/j.neucom.2011.02.024 DOI]<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br />
<br />
; Emilio Corchado, Manuel Graña, Michal Wozniak<br />
: Neurocomputing January 2012, Volume 75, Issue 1, pp. 61-63<br />
: editorial New trends and applications on hybrid artificial intelligence systems [http://www.sciencedirect.com/science/article/pii/S0925231211004206]<br />
: JCR (2010) 1.429, : (2011) JCR 1.580 (Q2 CSAI)<br />
<br />
;Miguel A. Veganzones and Manuel Graña<br />
:[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6169956&contentType=Journals+%26+Magazines&queryText%3Dspectral+spatial+cbir "A spectral/spatial CBIR system for hyperspectral images."]<br />
: IEEE Journal of Selected Topics in Applied Earth Observation and Remote Sensing 5(2), pp 488-500. April 2012.<br />
: JCR (2010) 1.140 (2011) 1.489 (2012) 2.874 (Q2 GP, Q1 ISPT, Q1 RS)<br />
<br />
;Manuel Graña and Miguel A. Veganzones<br />
:[http://asp.eurasipjournals.com/content/2012/1/64 "Endmember induction by Lattice Associative Memories and Multi-Objective Genetic Algorithms."]<br />
: EURASIP Journal on Advances in Signal Processing 2012, nº. 1 (marzo 13, 2012): 64. [http://www.biomedcentral.com/content/qcpdf/1687-6180-2012-64.pdf pdf]<br />
:JCR (2010) 1.012 (2011) 0.811 (2012) 0.807 (Q3 EEE)<br />
<br />
;Maite Termenon, Manuel Graña<br />
:A two stage sequential ensemble applied to the classification of Alzheimer's Disease based on MRI features [http://www.springerlink.com/content/x74212k073375777/]<br />
: Neural Processing Letters (2012) 35(1): 1-12 <br />
: JCR (2010) 1.088 (2012) 1.240 (Q2 CSAI)<br />
<br />
;Ivan Macia, Manuel Graña; Celine Paloc,<br />
: Knowledge Management in Image-based Analysis of Blood Vessel Structures<br />
:Knowledge and Information Systems 30(2) (2012):457-491 [http://www.springerlink.com/content/l747p10765858h1j/]<br />
: JCR Impact factor (2009) 2.211 (2010) 2.000 (2011) 2.225<br />
<br />
<br />
;Andoni Beristain, Manuel Graña, Ana I. Gonzalez<br />
:A Pruning Algorithm for Stable Voronoi Skeletons<br />
: Journal of Mathematical Imaging and Vision (2012) 42:225–237 <br />
: JCR (2009) 1.437 (2010) 1.244 (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Z. Echegoyen, J.M. Lopez-Guede, B. Fernandez-Gauna and M. Graña<br />
: Visual Servoing of Legged Robots<br />
: Journal of Mathematical Imaging and Vision 42(2) (2012): 196-211 [http://www.springerlink.com/content/c4x1r11188l31083/ doi]<br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Peter Sussner, Estevão L.Esmi, Ivan Villaverde, Manuel Graña<br />
:The Kosko Subsethood FAM: Mathematical Background, Properties, and Some Experimental Results in Computer Vision<br />
: Journal of Mathematical Imaging and Vision (2012) 42:134–149 <br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Manuel Graña, Emilio Corchado, Michal Wozniak<br />
:Special Issue on Hybrid Artificial Intelligent Systems <br />
: Journal of Mathematical Imaging and Vision: Volume 42, Issue 2 (2012), Page 101-102 [http://www.springerlink.com/content/457024354t87u21u/ doi]<br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011). <br />
:Experiments for the selection of sub-word units in the Basque context for semantic tasks, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 49-56<br />
: DOI 10.1007/s10772-011-9109-1<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011) <br />
:Semantic Speech Recognition in the Basque context Part I: Cross-lingual approaches, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 33-40<br />
: DOI 10.1007/s10772-011-9111-7<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011). <br />
:Semantic Speech Recognition in the Basque context Part II: Language Identification for under-resourced languages, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 41-47<br />
: DOI 10.1007/s10772-011-9114-4<br />
<br />
;Juan José Valera García Vicente Gómez Garay, Eloy Irigoyen Gordo, Fernando Artaza Fano, Mikel Larrea Sukia<br />
:Intelligent Multi-Objective Nonlinear Model Predictive Control (iMO-NMPC): Towards the ‘on-line’ optimization of highly complex control problems<br />
:Expert Systems with Applications, Volume 39, Issue 7, 1 June 2012, Pages 6527–6540<br />
: JCR (2010) 1.924<br />
<br />
;Carlos Toro, Eider Sanchez, Eduardo Carrasco, Leonardo Mancilla-Amaya, Cesar Sanín, Edward Szczerbicki, Manuel Graña, Patricia Bonachela, Carlos Parra, Gloria Bueno, Frank Guijarro<br />
:USING SET OF EXPERIENCE KNOWLEDGE STRUCTURE TO EXTEND A RULE SET OF CLINICAL DECISION SUPPORT SYSTEM FOR ALZHEIMER'S DISEASE DIAGNOSIS [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/465/ToroSanchez2012.pdf]<br />
:Cybernetics and Systems: An International Journal, 2012. Volume 43, Issue 2, pp 81-95 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2012.654070 doi]<br />
:JCR (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
<br />
Carlos Toro, Javier Vaquero, Manuel Graña, Cesar Sanín, Edward Szczerbicki & Jorge Posada<br />
:BUILDING DOMAIN ONTOLOGIES FROM ENGINEERING STANDARDS [http://www.tandfonline.com/doi/full/10.1080/01969722.2012.654073#.VDGS9ufhpiU]<br />
;Cybernetics and Systems 2012, 43(2): 114-126<br />
:JCR (2010) 0.662 (2011) 1.182 (Q2 CSC) (2012) 0.973<br />
<br />
<br />
;Blanca Cases, Israel Rebollo, Manuel Graña <br />
:A Spatial-social-logical model explaining human behavior in emergency situations <br />
: Logic Journal of the IGPL 20(3):625-633<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
;Josune Gallego, Carmen Hernandez, Manuel Graña<br />
:A Morphological Cellular Automata based on Morphological Independence <br />
: Logic Journal of the IGPL 20(3):617-624<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
; Manuel Graña, Emilio Corchado, Michal Wozniak<br />
:Special issue: HAIS 2010<br />
: Logic Journal of the IGPL 20(3):533-534<br />
: doi: 10.1093/jigpal/jzr001 [http://jigpal.oxfordjournals.org/content/early/2011/02/24/jigpal.jzr001.full.pdf]<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
<br />
;G. García, J. Maiora A. Tapia, M. De Blas<br />
:Evaluation of Texture for Classification of Abdominal Aortic Aneurysm After Endovascular Repair<br />
:Journal of Digital Imaging 25(3):369-376<br />
:(ISI JCR 0.96) (2011) 1.255 (Q3 RNMMI)<br />
<br />
; Manuel Graña, Ivan Villaverde, Jose Manuel Lopez-Guede, Borja Fernandez-Gauna<br />
: Lattice Independent Component Analysis for Appearance Based Mobile Robot Localization<br />
: Neural Computing and applications, 21(5) (2012): 1031-1042<br />
: Indice de impacto JCR (2009) 0.812 (2010) 0.563 (2011) 0.699 (Q3 CSAI) (2012) (Q3 CSAI) (2012) 1.168<br />
<br />
==2011==<br />
<br />
; Josu Maiora, Manuel Graña<br />
: A computer aided diagnostic system for survival analysis after EVAR treatment<br />
: Journal of Medical Informatics & Technologies, (2011) 18:51-58<br />
<br />
;Ivan Macia; Manuel Graña; Josu Maiora; Celine Paloc; Mariano de Blas<br />
:Detection of Type II Endoleaks in Abdominal Aortic Aneurysms After Endovascular Repair<br />
:Computers in Biology and Medicine 41(10): 871-880 [http://dx.doi.org/10.1016/j.compbiomed.2011.07.005]<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112 (2011) 1.089 (Q3 B, Q3 CSIA, Q3 EB, Q4 MCB)<br />
<br />
;M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br />
:Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson’s correlation<br />
:Neuroscience letters,Volume 502, Issue 3, 20 September 2011, Pages 225-229 [http://dx.doi.org/10.1016/j.neulet.2011.07.049 on line]<br />
: Indice de impacto JCR (2010) 2.055 (2011) 2.105 (Q3 Neurosciences)<br />
<br />
; Manuel Graña, Borja Fernandez-Gauna, Jose Manuel Lopez-Guede<br />
:Cooperative Multi-Agent Reinforcement Learning for Multi-Component Robotic Systems: guidelines for future research<br />
: Paladyn . Journal of Behavioral Robotics. [http://www.editorialmanager.com/paladyn/mainpage.html] 2(2):71-81 [[media:Draft-2011-07-01-Paladyn.MARLReview.Grana.Borja.pdf|draft]]<br />
<br />
;A. Moujahid, A. d' Anjou, F. J. Torrealdea, and F. Torrealdea<br />
:Energy and information in Hodgkin-Huxley neurons<br />
:Phys. Rev. E 83, 031912 (2011)<br />
:Impact Factor: 2.400<br />
<br />
;A. Moujahid, A. d' Anjou, F. J. Torrealdea, and F. Torrealdea<br />
:Efficient synchronization of structurally adaptive coupled Hindmarsh-Rose neurons<br />
:Chaos, Solitons and Fractals: the interdisciplinary journal of Nonlinear Science, and Nonequilibrium and Complex Phenomena, DOI:10.1016/j.chaos.2011.07.005 (2011)<br />
:Impact Factor: 1.72<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI]<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112 (2011) 1.089 (Q3 B, Q3 CSIA, Q3 EB, Q4 MCB)<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez Guede, Ekaitz Zulueta, Zelmar Echegoyen, Manuel Graña<br />
: Basic Results and Experiments on Robotic Multi-Agent System for Hose Deployment and Transportation <br />
: International Journal of Artificial Intelligence (IJAI) 6(S11):183-202 [http://www.ceserp.com/cp-jour/index.php?journal=ijai&page=article&op=view&path%5B%5D=923]<br />
<br />
;Ramón Moreno, Manuel Graña, Alicia d’Anjou<br />
:Illumination Source Chromaticity Estimation Based on Spherical Coordinates in RGB<br />
: Electronics letters, (2011) 47(1):28–30 [http://dx.doi.org/10.1049/el.2010.2735 DOI]<br />
: An implementation can be found in [[Illumination Source Chromaticity Estimation (ISC)]] <br />
: ISI JCR (2009) 0.970<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181 (2011), pp. 1910-1928 <br />
:Impact factor JCR (2008): 3.095 (2009) 3.291 (2010) 2.836 (2011) 2.833 (Q1 CSIS) (2012) 3.643 (Q1 CSIS)<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
;Javier Vaquero, Carlos Toro, Manuel Graña<br />
: Preserving Virtual Engineering Knowledge thorough the Product Life Cycle<br />
: Cybernetics & Systems 42 (2): 124-138. <br />
: ISSN: 0196-9722 (Print), 1087-6553 (Online), Taylor and Francis publishers (2011)<br />
: ISI JCR (2009) 0.780 (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
: [[media:Draft jvaquero 2010.pdf|draft of the paper]]<br />
<br />
<br />
; Ivan Villaverde, Manuel Graña<br />
:Neuro-Evolutionary mobile robot egomotion estimation with a 3D ToF camera<br />
: Neural Computing and applications 20(3): 345-354, [http://dx.doi.org/10.1007/s00521-010-0384-6 DOI]<br />
: ISI JCR (2008) 0.767 (2009) 0.812 (2010) 0.563 (2011) 0.699 (Q3 CSAI)<br />
<br />
==2010==<br />
<br />
; Miguel Angel Veganzones, Leonia Nunes, Domingos Lopes, Carmen Hernández and Manuel Graña<br />
: Implementation of an user-friendly interface of the Forest-BGC model for regional/global-scale researches<br />
: [http://www.inrb.pt/inia/silva-lusitana SILVA LUSITANA], Año XVIII, December 2010.<br />
: Instituto Nacional de Investigaçao Agraria (Eds.); Portugal.<br />
: ISSN 0870-6352.<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Ekaitz Zulueta, Manuel Graña <br />
:Learning hose transport control with Q-learning <br />
: Neural Network World 20(7):913-923 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511<br />
<br />
;Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br />
:Neural classifiers for schizophrenia diagnostic support on diffusion imaging data<br />
: Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511 (2011) 0.646 (Q4 CSAI)<br />
<br />
;E. Irigoyen, M. Larrea, J. Valera, V. Gómez, F. Artaza<br />
:A Neuro‐Genetic Control Scheme application for industrial R^3 workspaces<br />
: Neural Network World 20(7):811-824 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511<br />
<br />
;Maiora, J., Garcia, G., Tapia, A., Macia, I., Legarreta, J.H., Paloc, C., De Blas, M. & Grana, M.<br />
:Thrombus Change Detection After Endovascular Abdominal Aortic Aneurysm Repair<br />
:International Journal of Computer Assisted Radiology and Surgery<br />
:Springer-Verlag, 2010, Vol. 5 (Suppl 1), pp. S15<br />
: IF JCR (2011) 1.481<br />
<br />
; Iñigo Barandiaran, Celine Paloc, Manuel Graña<br />
:Real-time Optical Markerless Tracking for Augmented Reality Applications<br />
:J Real-Time Image Processing 5(2):129-138 [http://www.springerlink.com/content/1861-8200], doi [http://www.springerlink.com/content/x281360862565132/]<br />
: Impact factor JCR (2010): 0.962 (2011) 1.020 (Q3 CSAI, Q3 EEE, Q2 ISPT)<br />
<br />
;Z. Echegoyen, I. Villaverde, R. Moreno, M. Graña, A. d’Anjou<br />
:Linked Multi-Component Mobile Robots: modeling, simulation and control<br />
: Robotics and Autonomous Systems 58(12) : 1292-1305<br />
:Impact Factor (2008): 1.214 (2009) 1.361 (2010) 1.313<br />
: DOI [http://dx.doi.org/10.1016/j.robot.2010.08.008]<br />
<br />
; Ramón Moreno, Manuel Graña, Ekaitz Zulueta<br />
:An RGB Color Gradient following Color Constancy Preservation<br />
: Electronics Letters 46(13): 908--910<br />
: ISI JCR (2009) 0.970 (2010) 1.001<br />
<br />
;Richard J Duro; Manuel Graña Romay; Javier de Lope Asiain,<br />
:On the Potential Contributions of Hybrid Intelligent Approaches to Multicomponent Robotic System Development [[media:14-04-09-Hais2008-Duro.pdf|draft]] <br />
: Information Sciences 180 (14):2635-2648<br />
: DOI [http://dx.doi.org/10.1016/j.ins.2010.02.005]<br />
: Impact factor JCR (2008): 3.095 (2009) 3.291 (2010) 2.833<br />
<br />
; Andoni Beristain, Manuel Graña<br />
: A pruning algorithm for Voronoi Skeletons<br />
: Electronics Letters 46(1):39-41 <br />
:ISI JCR (2008) 1.140 (2009) 0.970 (2010) 1.001<br />
<br />
;Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández. <br />
:A Lattice Computing approach for On-line fMRI analysis, <br />
:Image and Vision Computing 28(7):1155-1161, July 2010, <br />
: DOI http://dx.doi.org/10.1016/j.imavis.2009.10.004<br />
:ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br />
<br />
==2009==<br />
<br />
;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou, Abdelmalik Moujahid, N. Vélez de Mendizábal<br />
:Energy efficiency of information transmission by electrically coupled neurons<br />
:Biosystems, Volume 97, Issue 1, July 2009, Pages 60-71<br />
:Impact factor: 1.646<br />
<br />
;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou<br />
:Energy consumption and information transmission in model neurons<br />
:Chaos, Solitons & Fractals, Volume 40, Issue 1, 15 April 2009, Pages 60-68<br />
:Impact factor: 3.025 (2009) 3.315<br />
<br />
;Maite García-Sebastián, Ana Isabel González, Manuel Graña<br />
:An Adaptive Field Rule for Non-parametric MRI Intensity Inhomogeneity Estimation Algorithm [http://dx.doi.org/10.1016/j.neucom.2008.12.034]<br />
:Neurocomputing 72 (2009) 3556–3569<br />
:DOI: doi:10.1016/j.neucom.2008.12.034<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
:JCR (2008) 1.234<br />
<br />
;Abdelmalik Moujahid, Blanca Cases, F.J. Olasagasti<br />
:Consensus dynamics in a dolphin social network<br />
:CEUR Workshop Proceedings, vol-442,2 (ISSN 1613-0073) <br />
<br />
;Blanca Cases, F.Javier Olasagasti, Abdelmalik Moujahid, Alicia D'Anjou <br />
:Swarm Intelligence: una aplicación a la toma de decisiones colectivas<br />
:CEUR Workshop Proceedings, vol-442,6 (ISSN 1613-0073) <br />
<br />
;Andoni Beristain, Manuel Graña.<br />
:Emotion Recognition Based on the Analysis of Facial Expressions.<br />
: New Mathematics and Natural Computation (NMNC), 5(2) pp.513-534 (world scientific press [http://www.worldscinet.com/nmnc/nmnc.shtml])<br />
<br />
;Manuel Graña, Ivan Villaverde, José Orlando Maldonado, Carmen Hernandez<br />
:Two Lattice Computing approaches for the unsupervised segmentation of Hyperspectral Images<br />
: Neurocomputing, 72(2009):2111–2120<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI 10.1016/j.neucom.2008.06.026<br />
<br />
; Manuel Graña<br />
: Special issue on the Lattice Computing and Natural Computing track from JCIS 2007<br />
: Neurocomputing 72:2065–2066<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI http://dx.doi.org/10.1016/j.neucom.2008.11.021<br />
<br />
;Maite García-Sebastián, Carmen Hernandez, Alicia d'Anjou<br />
:Robustness of an Adaptive MRI Segmentation Algorithm Parametric Intensity Inhomogeneity Modeling [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V10-4V59VW3-8&_user=984461&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000049823&_version=1&_urlVersion=0&_userid=984461&md5=706b7323a65e4074fdf4015bcb1a34d3]<br />
:Neurocomputing 72 (2009) 2146-2152. [[BibTeX]]<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI 10.1016/j.neucom.2008.07.014<br />
<br />
==2008==<br />
<br />
;Pablo González-Nalda and Blanca Cases<br />
:Topos: Spiking neural networks for temporal pattern recognition in complex real sounds<br />
:Neurocomputing, (2008) 71(4-6) :721-732<br />
: JCR 2008 1.234 JCR 2009 1.440<br />
<br />
;Ivan Villaverde, Zelmar Echegoyen, Manuel Graña<br />
: Neuro-Evolutive system for ego-motion estimation with a 3D camera<br />
: Australian Journal of Intelligent Information Systems, 10(1):59-70<br />
: ISSN 1321-2133<br />
<br />
;Israel Rebollo, Manuel Graña<br />
: Aplicaciones de RFID<br />
: Novatica,195:42-46, sept. 2008, <br />
<br />
; Jose Orlando Maldonado, Manuel Graña<br />
:Recycled paper visual indexing for quality control<br />
: Expert Systems with Applications, 45(4) pp 8807–8815<br />
: ISI JCR 2007 1.177- 2008 2.596 (Q1 CSAI, Q1 EEE, Q1 ORMS)<br />
: http://dx.doi.org/10.1016/j.eswa.2008.11.023<br />
<br />
;Sanin, C., Toro, C., Vaquero, J., Szczerbicki, E. Posada, J. <br />
:Implementing Decisional DNA in Industrial Maintenance by a knowledge SOUPA Extension <br />
: Systems Science, Vol. 33 No. 2:61-68 <br />
: ISSN: 0137-1223, Wroclaw, Poland 2008.<br />
<br />
;Toro, C ,Sanin, C. / Szczerbicki, E. / Posada, J. <br />
: Reflexive Ontologies: Enhancing Ontologies with self-contained queries <br />
:Cybernetics and Systems: An International Journal, 39: 1–19 <br />
:ISSN: 0196-9722 print, 1087-6553 online, USA 2008.<br />
: ISI JCR 2006 0.964<br />
<br />
;Eloy Irigoyen, Miguel Pinzolas<br />
:Numerical bounds to assure initial local stability of NARX multilayer perceptrons and radial basis functions<br />
:Neurocomputing, 72; 539-547<br />
:ISSN: 0925-2312<br />
:ISI JCR 2008 1.745<br />
:http://dx.doi.org/10.1016/j.neucom.2007.11.018<br />
<br />
==2007==<br />
<br />
;Maite Garcia-Sebastián, Elsa Fernandez, M. Graña, Francisco J. Torrealdea<br />
:''A parametric gradient descent MRI intensity inhomogeneity correction algorithm'' (pdf [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V15-4NT84HV-2&_user=984461&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_searchStrId=940574918&_rerunOrigin=google&_acct=C000049823&_version=1&_urlVersion=0&_userid=984461&md5=112b05574e5ac5481a15297bb531da15])<br />
:Pattern Recognition Letters 28(13):1657-1666<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005, 2006, 2007) 0.552, 1.138 0.952 0.853<br />
<br />
;Ivan Villaverde, Alicia d'Anjou, M. Graña<br />
:''Morphological Neural Networks and Vision Based Simultaneous Localization and Mapping''<br />
:Integrated Computer-Aided Engineering 14(4):355-363<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.444, JCR 2006 0.236, JCR 2007 0.113, JCR 2008 0.617<br />
<br />
;Toro, C. / Posada, J / Oyarzun, J / Falcón, J<br />
: Supporting the CAD Structural Design Process with knowledge based tools, <br />
:Journal of Cybernetics and systems, <br />
:ISBN 1087-6553 (electronic) 0196-9722 (paper), Taylor and Francis publishers, 2007.<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.681, JCR 2006 0.964, JCR 2007 0.655<br />
<br />
;Sanin, C. / Szczerbicki, E. / Toro, C. <br />
: An OWL Ontology of Set of Experience Knowledge Structure <br />
: Journal of Universal Computer Science , Volume 13, number 2, pages 209-223, 2007<br />
<br />
; EKAITZ ZULUETA GUERRERO; PEDRO MARIA IRIONDO BENGOA; JOSE MANUEL LOPEZ GUEDE; Ander Etxeberria <br />
: Entropy Analysis for Stochastic System Control<br />
: INTERNATIONAL JOURNAL OF FACTORY AUTOMATION, ROBOTICS AND SOFT COMPUTING 2(2): 88-92<br />
<br />
==2006==<br />
<br />
;F.J. Torrealdea, A. d'Anjou, Manuel Graña, C. Sarasola<br />
:''Energy aspects of the synchronization of model neurons''<br />
: Physical Review E 74:011905<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2006 2.438<br />
<br />
;Toro, C. Posada, J Wundrak, S Stork, A<br />
: Improving Virtual Reality Applications in CAD through Semantics,<br />
:The International Journal of Virtual Reality, 2006, volume 5, Number 4, pages 39-46<br />
<br />
;Posada, J. / Wundrak, S. / Toro, C. / Stork, A. <br />
: Using Ontologies and STEP standards for the semantic simplification of CAD models in different engineering domains <br />
: Journal of Applied Ontology, Volume 1, Number 3-4/2006, pp. 263-279<br />
<br />
==2005==<br />
<br />
; Gurutze Arzamendi, Alicia d'Anjou, Manuel Graña, José R. Leiza, José M. Asua<br />
: ''Model reduction in emulsion polymerization using hybrid first principles/artificial neural networks models 2a Long Chain Branching Kinetics''<br />
: Macromolecular Theory and Simulations 14:125-132<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 1.544<br />
<br />
; C. Sarasola, A. d'Anjou, F.J. Torrealdea, Manuel Graña<br />
: ''Minimization of the energy flow in the synchronization of nonindentical chaotic systems''<br />
: Physical Review E 72:026223<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 2.418<br />
<br />
;C. Sarasola, , A. d'Anjou, F. J. Torrealdea and A. Moujahid<br />
: ''Energy-like functions for some dissipative chaotic systems.'' <br />
: Int. J. Bifurcation and Chaos 15(8), 2507-2521<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.845<br />
<br />
; A. d'Anjou, C. Sarasola, , F. J. Torrealdea. <br />
: ''On the characterization of different synchronization stages by energy considerations.''<br />
: Journal of Physics: Conference Series, 23, 238–251<br />
<br />
;Blanca Cases and Manuel Alfonseca<br />
:Towards a proof of the decidability of the momentary stagnation of the growth function of D0L systems<br />
:Theoretical Computer Science, Volume 341, Issues 1-3, 5 September 2005, Pages 247-262<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.743<br />
<br />
;Posada, J. / Wundrak, S. / Toro, C. / Stork, A. <br />
: Using Ontologies and STEP standards for the semantic simplification of CAD models in different engineering domains <br />
: Journal of Applied Ontology, Volume 1, Number 3-4/2006, pp. 263-279<br />
<br />
==2004==<br />
<br />
; M. Graña, J. Gallego, C. Hernandez<br />
: ''A Single Individual Evolutionary Strategy for Endmember Search in Hyperspectral Images.''<br />
:Information Sciences, Int. J 161(3-4):181-197<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2003, 2005) 0.264, 0.447, 0.723<br />
<br />
;B. Raducanu, Manuel Graña, F.X. Albizuri, A. d'Anjou<br />
: ''A Probabilistic Hit-and-Miss Tranform for Face Localization''<br />
:Pattern Análisis and Applications 7:117-127<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 0.803<br />
<br />
;Elsa Fernandez, Manuel Graña, Jesús Ruiz-Cabello<br />
: ''On a Gradient Based Evolution Strategie For Parametric Illumination Correction''<br />
:Electronics Letters 40(9):531-532<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 0.968<br />
<br />
;Cecilia Sarasola, Francisco J. Torrealdea, Alicia d'Anjou, A. Moujahid, Manuel Graña<br />
: ''Energy balance in feedback synchronization of chaotic systems''<br />
: Physical review E 69-011606<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 2.352<br />
<br />
==2003==<br />
<br />
; F. Xabier Albizuri, Manuel Graña, Bogdan Raducanu <br />
:Statistical transmission delay guarantee for nonreal-time traffic multiplexed with real-time traffic<br />
:Computer Communications 26 (2003) 1365–1375<br />
: Indicadores de calidad, JCR (2005) 0.556 (2009) 0.933<br />
<br />
; M. Graña, P. Sussner, G.X. Ritter<br />
: [[media:Grana-sussner-ritter-2003-mathware.pdf|Innovative Applications of Associative Morphological Memories]]<br />
: Mathware & Soft Computing 10(3):155-168<br />
: [http://ic.ugr.es/Mathware/index.php/Mathware/issue/view/6 journal web page]<br />
<br />
;A. d'Anjou, F. J. Torrealdea, J.R. Leiza, J.M. Asua, G. Arzamendi <br />
: ''Model reduction in emulsion polymerization using Hybrid First-Principles/Artificial Neural Networks models''<br />
: Macromolecular Theory and Simulation 12:42-56<br />
: indicadores de calidad, JCR (2005) 1.544 (2006) 1.073 (2007) 1.792 (2008) 1.912 (2009) 1.683<br />
<br />
; C. Sarasola, F.J. Torrealdea, A. d'Anjou, A. Moujahid and M. Graña<br />
: ''Feedback synchronization of chaotic systems''<br />
: Int. J. Bifurcation and Chaos 13(1):177-191<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.014<br />
<br />
;B. Raducanu, M. Graña, F.X. Albizuri<br />
: ''Morphological Scale Spaces and Associative Morphological Memories: Results on Robustness and Practical Applications''<br />
: Journal of Mathematical Imaging and Vision 9(2):113-131<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2003, 2005) 0.617,2.197<br />
<br />
;C. Sarasola, F.J. Torrealdea, A. d’Anjou, A. Moujahid, M. Graña,<br />
: ''Nonzero error synchronization of chaotic systems via dynamic coupling''<br />
: Physica D 177(1-4):39-49<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2002,2003:1.144,1.014<br />
<br />
;R. Perez de Alejo, J. Ruiz-Cabello, M. Cortijo, I. Rodriguez, I. Echave, J. Regadera, J. Arrazola, P. Avilés, P. Barreiro, D. Gargallo, M. Graña<br />
: ''Computer- Assisted Enhanced Volumetric Segmentation Magnetic Resonance Imaging Data Using a Mixture of Artificial Neural Networks''<br />
: Magnetic Resonance Imaging 21:901-912<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.420<br />
<br />
; JOSE MARIA GONZALEZ DE DURANA GARCIA; TEODORO RICO PASTRANA; EKAITZ ZULUETA GUERRERO<br />
: HYBRID MODELING OF OPEN LOOP DC-DC CONVERTERS.<br />
: FACING 11(2): 41--47<br />
<br />
==2002==<br />
<br />
;C. Sarasola, F.J. Torrealdea, A. d'Anjou, M. Graña<br />
: ''Cost of synchronizing different chaotic systems''<br />
: Mathematics and Computers in Simulation 58:309-327<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2005): 0.253,0.554<br />
<br />
; Jesús Ruiz-Cabello, Javier Regadera, Carmen Santisteban, Manuel Graña, Rigoberto Pérez de Alejo, Imanol Echave, Pablo Avilés, Ignacio Rodriguez, Inmaculada Santos, Domingo Gargallo, Manuel Cortijo<br />
: ''Monitoring actute inflammatory processes in the mouse muscle by MR imaging and spectroscopy: a comparision with pathological results''<br />
: NMR in Biomedicine 15:204-214<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2002,2005) 2.160, 2.469<br />
<br />
==2001==<br />
<br />
; B. Raducanu, M. Graña, F.X. Albizuri, A. D'Anjou<br />
: ''Face localization based on the morphological multiscale fingerprints''<br />
: Pattern Recognition Letters 22:359-371<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005) 0.552, 1.138<br />
<br />
;A.I. Gonzalez, M. Graña, J. Ruiz-Cabello, A. d'Anjou<br />
: ''Experimental results of an Evolution-based Adaptation Strategy for VQ Image Filtering'' [[media:IS2001_Evolution_VQfilter.pdf|pdf]]<br />
: Information Sciences, Int. J. 133 (3-4):249-266<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2003, 2005) 0.264, 0.447, 0.723<br />
<br />
; M.C. Hernandez, F.X Albizuri, A. d'Anjou, M. Graña, F.J. Torrealdea<br />
: ''Efficient solution of MAX-SAT and SAT via higher order Boltzmann Machines''<br />
: Investigacion Operacional 22(1):67-78<br />
:Indicadores de calidad (Índice de Impacto o similares): <br />
:Editorial y Lugar de publicación: Dept. Matematica Aplicada, Fac. Matematica y Computación, Universidad de la Habana<br />
<br />
;Israel Rebollo, Manuel Graña y Carmen Hernández<br />
:APLICACION DE ALGORITMOS ESTOCASTICOS DE OPTIMIZACION AL PROBLEMA DE LA DISPOSICION DE OBJETOS NO-CONVEXOS. [[http://rev-inv-ope.univ-paris1.fr/files/22201/IO-22201-11.pdf]]<br />
: Investigacion Operacional 22(2):184-192<br />
:Indicadores de calidad (Índice de Impacto o similares): <br />
:Editorial y Lugar de publicación: Dept. Matematica Aplicada, Fac. Matematica y Computación, Universidad de la Habana<br />
<br />
; A. d'Anjou,C. Sarasola, F.J. Torrealdea, R. Orduna, M. Graña<br />
: ''Parameter adaptive identical synchronization disclosing Lorenz chaotic mask''<br />
: Physical Review E E63-046213<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 2.202, (JCR 2002 2.397)<br />
<br />
; S. O. Anchorena, B. Cases<br />
: ''Modeling Chaotic Series by Simple Eco-Grammar Systems with Reproduction, Death and Maturation of Agents.''<br />
: Grammars, vol. 6 num. 3, pp. 155-168 (2003)<br />
: EE: http://www.springerlink.com/content/n68251124147700r/<br />
<br />
==2000==<br />
<br />
;A.I. Gonzalez, M. Graña, F.X. Albizuri, A. D'Anjou, F.J. Torrealdea<br />
: A Near Real-Time Evolution-based Adaptation Strategy for Dynamic Color Quantization of Image Sequences [[media:IS2000_Evolution_CQ_image_sequence.pdf|pdf]]<br />
: Information Sciences, Int. J. 122:161-183<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2003, 2005) 0.447, 0.723<br />
<br />
;J. Ruiz Cabello, I Rodriguez, P. Avilés, M. Graña, I. Echave, J. Regadera, D. Gargallo, M. Cortijo<br />
: Magnetic resonance imaging to monitor the biology of inflammation<br />
: European Biophysics Journal 29(4-5):363<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2005) 1.917,1.811 <br />
:ISSN: 0175-7571<br />
<br />
;I Rodriguez, M. Graña, I. Echave, P. Barreiro, M. Cortijo, J. Ruiz Cabello<br />
: MR image processing using neural networks and vector quantization<br />
: Magnetic Resonance Materials in Physics, Biology and Medicine (MAGMA) 11 (supl. 1):143<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.836<br />
<br />
;F.X. Albizuri, A.I. Gonzalez, M. Graña, A. D'Anjou<br />
: ''Neural learning for distributions on categorical data''[[media:Albizuri2000_Neural_learning.pdf|pdf]]<br />
: Neurocomputing 34:1-9<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005) 0.534, 0.790<br />
<br />
==1999==<br />
<br />
;J.A. Lozano, P. Larrañaga, M. Graña, F.X. ALbizuri<br />
: ''Genetic Algorithms: bridging the convergence gap''<br />
: Theoretical Computer Science 229:11-22<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.743<br />
<br />
;A.I. Gonzalez, M. Graña, M. Cottrell<br />
: ''Basic competitive neural networks as adaptive mechanisms for non-stationary color quantization'' [[media:Ai-gonzalez-neural-computing-appl-1999.pdf|pdf]]<br />
: Neural Computing and Applications 8: 347-367<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.403<br />
<br />
==1998==<br />
<br />
; A. I. Gonzalez, M. Graña<br />
: ''Una estrategia evolutiva para clustering no estacionario''<br />
: Inteligencia Artificial, Revista Iberoamericana de Inteligencia Artificial, 2(5): 68-73<br />
<br />
;A. I. Gonzalez, M. Graña, A. D'Anjou, F.X. Albizuri, F.J Torrealdea<br />
: ''A comparison of experimental results with a Evolution Strategy and Competitive Neural Networks for near real-time Color Quantization of image sequences'' [[media:AppInt1998_Evol_CNN_CQ_sequences.pdf|pdf]]<br />
: Applied Intelligence 8 (1): 43-51<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 0.9<br />
<br />
==1997==<br />
<br />
; M. Graña, A. D´Anjou, F.J. Torrealdea<br />
: User expectations for the intelligent blackboard [[media:M-grana-displays-1997.pdf|pdf]]<br />
: Displays 17 (3-4): 143-146<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor: 0.947, JCR 2007 1.179<br />
<br />
; A. I. Gonzalez, M. Graña, A. D´Anjou, F.X. Albizuri, M. Cottrell<br />
: A sensitivity analysis of the Self Organizing Map as an Adaptive One-pass Non-stationary Clustering algorithm: the case of Color Quantization of image sequences [[media:NPL1997_SOM_onepass_nonstat_clustering.pdf|pdf]]<br />
: Neural Processing Letters 6: 77-89<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 0.701<br />
<br />
; F.X. Albizuri, A. D'Anjou, M. Graña, P. Larrañaga<br />
: Structure of the high-order Boltzmann Machine from Independence Maps<br />
: IEEE trans. Neural Networks 8 (6): 1351-1358<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 2.205<br />
<br />
; M. Graña, A. D'Anjou , F.X. Albizuri, M. Hernandez, F. J. Torrealdea, A.I. Gonzalez<br />
: Experiments of fast learning with High Order Boltzmann Machines [[media:Grana-HOBM-appl-int-1997.pdf|pdf]]<br />
: Applied Intelligence 7 (4): 287-303<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 0.569<br />
<br />
==1996==<br />
<br />
; F.X. Albizuri, A. D'Anjou , M. Graña,J.A. Lozano<br />
: Convergence properties of High-Order Boltzmann Machines<br />
: Neural Networks 9(9): 1561-1567<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 1.665<br />
<br />
;M. Graña, A. D'Anjou , F.X. Albizuri, J.A. Lozano, P. Larrañaga, Y. Yurramendi, M. Hernandez, J.L. Jimenez, F. J. Torrealdea, M. Poza, A.I. Gonzalez<br />
: Experimentos de aprendizaje con Máquinas de Boltzmann de alto orden [[media:Inf-y-automatica-exp-HOBM-96.pdf|draft]]<br />
: Informática y Automática 29(4): 42-57<br />
<br />
==1995==<br />
<br />
;A. I. González , M. Graña - A. D'Anjou<br />
: An analysis of the GLVQ algorithm [[media:IEEENN95_analysis_GLVQ.pdf|pdf]]<br />
: IEEE Transactions on Neural Netwoks 6 (4): 1012-1016<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 2.205<br />
<br />
; F. X. Albizuri - A. D'Anjou - M. Graña - F. J. Torrealdea - M. C. Hernández<br />
: The high order Boltzmann machine: learned distribution and topology<br />
: IEEE Transactions. on Neural Networks 6 (3): 767-770<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 2.205<br />
<br />
; M. Graña - A. D'Anjou - A. I. González - F. X. Albizuri - M. Cottrell<br />
: Competitive stochastic neural networks for vector quantization of images [[media:Neurocomputing95_CSNN_VQ.pdf|pdf]]<br />
: Neurocomputing 7: 187-195<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 0.790<br />
<br />
==1993==<br />
<br />
;Alicia D'Anjou - Manuel Graña - Fco. Javier Torrealdea - Mª Carmen Hernández<br />
: Solving satisfiability via Boltzmann machines [[media:Danjou-pami-1993.pdf|pdf]]<br />
: IEEE Transactions on pattern analysis and machine intelligence, 15:514-521<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 2.923<br />
<br />
==1992==<br />
<br />
;Alicia D'Anjou - Manuel Graña - Fco. Javier Torrealdea - Mª Carmen Hernández<br />
: Máquinas de Boltzmann para la resolución del problema de la satisfacibilidad en el cálculo proposicional<br />
: Revista Española de Informática y Automática 24: 40-49<br />
<br />
==1987==<br />
<br />
;Luis M. Alonso - Manuel Graña<br />
: Formal techniques and concurrent systems<br />
: Communications ACM 30: 752-753<br />
Indicadores de calidad (Índice de Impacto o similares): ISI JCR (2008) 2.646<br />
<br />
==1986==<br />
<br />
;Manuel Graña - Fco. Javier Torrealdea<br />
: Hierarchically structured Systems [[media:Grana-torrealdaea-1986.zip|scan]] [[media:Grana-torrealdea-1986.pdf|scan compressed]]<br />
: European Journal of Operational Research 25:20-26<br />
Indicadores de calidad ISI JCR: (2008) 1.627, <br />
<br />
; Fco. Javier Torrealdea - Manuel Graña - Fernando Ferreres<br />
: A comparison between stochastic and deterministic simulation<br />
: Advances in Modelling and Simulation (AMSE press) 5:15-32<br />
:Indicadores de calidad (Índice de Impacto o similares):<br />
<br />
; T. Alvarez - J. J. Dolado - M. Graña - I. Sukia - F. J. Torrealdea<br />
: Una versión de GPSS<br />
: Revista Española de Informática y Automática 19:45-59<br />
: Indicadores de calidad (Índice de Impacto o similares):<br />
<br />
==1984==<br />
<br />
;Fco. Javier Torrealdea - Manuel Graña<br />
: Some ideas for a history dynamics model.<br />
: Dynamica 10: 103-106 [http://www.systemdynamics.org/dynamica/articles/102/5.pdf]<br />
:Originalmente editada por el Bradford System Dynamics group fue posteriormente asumida por la System Dynamics Society y convertida en la actual The International Journal of System Dynamics, manteniendo los fondos bibliograficos asociados a Dynamica.<br />
: [http://www.systemdynamics.org/conferences/1983/proceed/parallel-vol2/torre913.pdf la publicación en la conferencia de System Dynamics que dió lugar al artículo]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Revistas&diff=17740
Revistas
2015-04-25T13:20:19Z
<p>Chyzhyk.darya: /* aceptados */</p>
<hr />
<div>[[media:Revistas-GIC-1984-2009.bib.zip|bib de revistas hasta 2009]]<br />
==submitidos sin decision==<br />
<br />
<br />
<br />
; Ion Marques, Manuel Graña, and Miguel Velez-Reyes<br />
:Towards human skin detection via hyperspectral image unmixing<br />
: GRSL<br />
: JCR (2013) 1.809 (Q2 EEE, Q2 GEOCHEMISTRY & GEOPHYSICS, Q2 ISPT, Q2 remote sensing)<br />
<br />
; Dacosta-Aguayo R, Graña M, Falcón C, Fernández-Andújar M, López-Cancio E, Cáceres C, Bargalló N, Barrios M, Clemente IC, Torán Pera, Forés Rosa, Dávalos A, Tibor A and Mataró M<br />
:Multimodal imaging of the healthy contralesional hemisphere provides insight into neural, functional and cognitive recovery in ischemic stroke patients<br />
:<br />
<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br />
:Further Results Learning Hose Transport Control with Q-learning<br />
: Journal of Physical Agents (aceptado con revisiones)<br />
<br />
<br />
; Borja Ayerdi, Manuel Grana<br />
: Adaptive Hybrid Extreme Rotation Forest<br />
: Neural Processing Letters<br />
: JCR 2013 1.237 (Q2 CSAI)<br />
<br />
<br />
; Borja Ayerdi, Bartosz Krawczyk, Manuel Graña, Michal Wozniak<br />
: Combining One-Class Classifiers for Hyperspectral Image Segmentation<br />
: Fundamenta Informaticae<br />
<br />
==aceptados ==<br />
<br />
;Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzherimer Research, (accepted)<br />
: JCR (2013) 3.796 (Q1 Clin Neurol, Q2 Neurosciences)<br />
<br />
<br />
;Borja Fernandez-Gauna; Ismael Etxeberria-Agiriano; Manuel Graña<br />
:Learning Multirobot Hose Transportation and Deployment by Distributed Round-Robin Q-Learning<br />
: PlosOne (aceptado 18 de marzo)<br />
: JCR (2012) 3.730, (Q1 mult. sciences) (2013) 3.534 (Q1 mult. sci.)<br />
<br />
;Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br />
:Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification<br />
:Neurocomputing (aceptado 6 de marzo)<br />
<br />
; Borja Ayerdi, Manuel Graña<br />
: Hyperspectral Image Nonlinear Unmixing and Reconstruction by ELM Regression Ensemble<br />
: Neurocomputing<br />
<br />
;I. Macía, M. de Blas, J.H. Legarreta, L. Kabongo, O. Hernández, J.M. Egaña, J.I. Emparanza, A. García-Familiar, M. Graña<br />
:Standard and Fenestrated Endograft Sizing in EVAR Planning: Description and Validation of a Semi-automated 3D Software<br />
: Computerized Medical Imaging and Graphics [http://www.journals.elsevier.com/computerized-medical-imaging-and-graphics/] (accept 16 enero 2015)<br />
: JC· 2013 1.496 (Q3 RNMMI)<br />
<br />
<br />
<br />
;J. David Nuñez-Gonzalez, Manuel Graña, Bruno Apolloni, <br />
:Reputation Features for Trust Prediction in Social Networks, <br />
:Neurocomputing (aceptado)<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Ion Marques, Manuel Graña, Anna Kamińska-Chuchmała, Bruno Apolloni, <br />
:An experiment of subconscious intelligent social computing on household appliances, <br />
:Neurcomputing (aceptado agosto 2014)<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Fernández-Andújar M, Doornink F, Dacosta-Aguayo R, Soriano-Raya JJ, Miralbell J, Bargalló N, López-Cancio E, Pérez de la Ossa N, Gomis M, Millán M, ;Barrios M, Cáceres C, Clemente I, Dávalos A, Mataró M <br />
: Remote thalamic microstructural abnormalities related to cognitive function in ischemic stroke patients <br />
: Neuropsychology (aceptado 4 de abril 2014)<br />
: JCR (2012): 3.477 (Q1)<br />
<br />
<br />
;Maria Mataró, Juan José Soriano-Raya, Jorge López-Olóriz, Júlia Miralbell, Rosalia Dacosta-Aguayo<br />
:CEREBROVASCULAR MARKERS IN LOWERED COGNITIVE FUNCTION<br />
:Journal of Alzheimer Disease, (accepted)<br />
:JCR (2013) 3.612 (Q1 clinical neu.)<br />
<br />
== online first==<br />
<br />
; Alexandre Savio, Manuel Graña<br />
:Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI<br />
:Neurocomputing (aceptado 10 enero 2015) [http://authors.elsevier.com/sd/article/S0925231215002970]<br />
: DOI 10.1016/j.neucom.2015.01.079<br />
<br />
<br />
;Lopez-Guede, Jose M.; Fernandez-Gauna, Borja; Graña, Manuel; Zulueta, Ekaitz; <br />
:Training Multi-agent systems by Q-learning: approaches and empirical results<br />
: Computational Intelligence [http://onlinelibrary.wiley.com/doi/10.1111/coin.12035/abstract]<br />
: DOI: 10.1111/coin.12035<br />
: JCR (2012) 1.000 (Q3 CSAI) (2013) 0.870<br />
<br />
;PAWEL KSIENIEWICZ, DARIUSZ JANKOWSKI, BORJA AYERDI, KONRAD JACKOWSKI, MICHAL WOZNIAK, MANUEL GRANA<br />
:A Novel Hyperspectral Segmentation Algorithm - Concept and Evaluation<br />
: Logic journal IGPL (aceptado noviembre 2014) [http://jigpal.oxfordjournals.org/content/early/2014/12/29/jigpal.jzu045.short]<br />
: JCR 2013 0.530 (Q2 Logic, Q3 Mathematics, Q4 MA)<br />
<br />
<br />
;Borja Fernandez-Gauna; Jose Manuel Lopez-Guede; Ismael Etxeberria-Agiriano; Igor Ansoategi; Manuel Graña<br />
:Reinforcement Learning endowed with safe veto policies to learn the control of L-MCRS<br />
:Information Sciences [http://www.sciencedirect.com/science/article/pii/S002002551500273X]<br />
: DOI 10.1016/j.ins.2015.04.005<br />
<br />
==2015==<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International Journal of Neural Systems 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] [http://www.worldscientific.com/doi/abs/10.1142/S0129065715500070?src=recsys&journalCode=ijns&]<br />
: JCR 2014 6.056 (Q1 CSAI)<br />
<br />
;A. Suberbiola, E. Zulueta, J.M. Lopez-Guede, I. Etxeberria-Agiriano, and M. Grana<br />
: Arm Orthosis/Prosthesis Movement Control Based on Surface EMG Signal<br />
: International Journal of Neural Systems 25(3):1550009 [http://www.worldscientific.com/doi/10.1142/S0129065715500094] (2015)<br />
: JCR 2014 6.056 (Q1 CSAI)<br />
<br />
; MANUEL GRAÑA, J. DAVID NUÑEZ-GONZALEZ, LEIRE OZAETA, ANNA KAMIŃSKA-CHUCHMAŁA<br />
:Experiments of Trust Prediction in Social Networks by Artificial Neural Networks [http://www.tandfonline.com/doi/full/10.1080/01969722.2015.1007725#.VRJqFkvXmlI]<br />
: Cybernetics and Systems Volume 46, Issue 1-2, 2015 pages 19-34<br />
: DOI:10.1080/01969722.2015.1007725<br />
<br />
; EIDER SANCHEZ, CARLOS TORO, MANUEL GRAÑA, CESAR SANIN, EDWARD SZCZERBICKI<br />
:Extended Reflexive Ontologies for the generation of clinical recommendations [http://www.tandfonline.com/doi/full/10.1080/01969722.2015.1007723#abstract]<br />
: Cyberntetics and Systems Volume 46, Issue 1-2, 2015 pages 4-18<br />
<br />
<br />
<br />
;Julián Estévez, Jose Manuel Lopez-Guede, Manuel Graña<br />
: Quasi-stationary State Transportation of a Hose with Quadrotors<br />
: Robotics and Automous Systems (aceptado 5 sept) Volume 63, Part 2, January 2015, Pages 187–194 [http://www.sciencedirect.com/science/article/pii/S0921889014001791]<br />
: JCR (2013) 1.105, (Q3 Robotics, Q3 CSAI, Q3 ACS)<br />
<br />
<br />
;M Graña, B Raducanu<br />
:Bioinspired and knowledge based techniques and applications<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 1–3<br />
:DOI 10.1016/j.neucom.2014.09.039<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Darya Chyzhyk, Manuel Graña<br />
:Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160<br />
: DOI 10.1016/j.neucom.2014.09.075<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña<br />
:An active learning approach for Stroke lesion segmentation on multimodal MRI data<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 26–36 [http://www.sciencedirect.com/science/article/pii/S0925231214012466]<br />
:DOI:10.1016/j.neucom.2014.01.077<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Borja Ayerdi, Ion Marqués, Manuel Graña<br />
:Spatially regularized semisupervised Ensembles of Extreme Learning Machines for hyperspectral image segmentation<br />
: Neurocomputing (aceptado 18 de enero 2014) Volume 149, Part A, 3 February 2015, Pages 373–386 [http://www.sciencedirect.com/science/article/pii/S0925231214011424] <br />
: JCR 2013 2.005 (Q1 CSAI)<br />
: DOI 10.1016/j.neucom.2014.01.068<br />
<br />
<br />
; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna,Jose Antonio Ramos-Hernanz<br />
:Single robot dynamics approximation by ELM for Reinforcement Learning for hose control<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 116–123<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br />
:A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data [http://www.sciencedirect.com/science/article/pii/S0925231214012454]<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 37–42<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Dacosta-Aguayo, Rosalia; Graña, Manuel; Iturria-Medina, Yasser; Fernández-Andújar, Marina; López-Cancio, Elena; Caceres, Cynthia; Bargallo, Nuria; Barrios, Maite; Clemente, Imma; Pera, Guillem; Fores, Rosa; Davalos, Antoni; Mataro, Maria<br />
:Impairment of Functional Integration of the Default Mode Network correlates with Cognitive Outcome at three months after Stroke<br />
: Human Brain Mapping Volume 36, Issue 2, February 2015, Pages: 577–590<br />
: DOI: 10.1002/hbm.22648<br />
: Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine & Medical Imaging); 23/252 (Neurosciences) (2013) 6.924 (Q1 Neuroimaging, Q1 RNMMI, Q1 Neurosciences)<br />
<br />
== 2014 ==<br />
<br />
;Eider Sanchez, Peng Wang, Carlos Toro, Cesar Sanin, Manuel Graña, Edward Szczerbicki, Eduardo Carrasco, Frank Guijarro and Luis Brualla<br />
:Decisional DNA for modeling and reuse of experiential-based clinical assessments in breast cancer diagnosis and treatment<br />
: Neurocomputing Volume 146, 25 December 2014, Pages 308–318 [http://www.sciencedirect.com/science/article/pii/S0925231214007826]<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Jose Manuel Lopez-Guede, Manuel Graña, Jesus Maria Larrañaga, Fernando Oterino<br />
: Educational innovation project in the field of Industrial Informatics <br />
: Procedia - Social and Behavioral Sciences, Volume 141, 25 August 2014, Pages 20–24<br />
: DOI 10.1016/j.sbspro.2014.05.006<br />
<br />
; Jose Manuel Lopez-Guede, Manuel Graña, Jesus Maria Larrañaga, Fernando Oterino<br />
: Retrospective Vision of a Long Term Innovative Experience<br />
: Procedia - Social and Behavioral Sciences, Volume 141, 25 August 2014, Pages 15–19<br />
: DOI 10.1016/j.sbspro.2014.05.005<br />
<br />
;Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró <br />
:Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study<br />
: Human Brain Mapping (aceptado 15 nov 2013) Volume 35, Issue 8, pages 3819–3831, August 2014 [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br />
: Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine & Medical Imaging); 23/252 (Neurosciences) (2013) 6.924 (Q1 Neuroimaging, Q1 RNMMI, Q1 Neurosciences)<br />
<br />
;Borja Fernández-Gauna; Igor Ansoategui; Ismael Etxeberria-Agiriano; Manuel Graña<br />
:Reinforcement Learning of ball screw feed drive controllers<br />
:Engineering Applications of Artificial Intelligence Volume 30, April 2014, Pages 107–117 [http://www.sciencedirect.com/science/article/pii/S0952197614000220]<br />
: JCR (2011) 1.665 (Q1 ENG) (2012) 1.625 (Q1 ENG, Q2 ACS, Q2 CSAI, Q2 EEE) (2013) 1.962 (Q1 ENG, Q2 ACS, Q2 CSAI, Q2 EEE)<br />
<br />
;Borja Ayerdi and Manuel Graña<br />
:Hybrid Extreme Rotation Forest <br />
: Neural Networks Volume 52, April 2014, Pages 33–42 [http://www.sciencedirect.com/science/article/pii/S0893608014000045]<br />
: JCR (2012) 1.927 (Q1 CSAI, Q3 NS) (2013) 2.076 (Q1 CSAI, Q3 NS)<br />
<br />
;Tuia, D. ; Merenyi, E. ; Jia, X. ; Grana-Romay, M.<br />
:Foreword to the Special Issue on Machine Learning for Remote Sensing Data Processing [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6804709]<br />
: Selected Topics in Applied Earth Observations and Remote Sensing, IEEE Journal of (Volume:7 , Issue: 4 ) pp. 1007 - 1011<br />
: JCR (2012) 2.874 (Q2 GP, Q1 ISPT, Q1 RS) (2013) 2.827 (Q2 GP, Q1 ISPT, Q1 RS, Q1 EEE)<br />
<br />
; Abdelmalik Moujahid, Alicia d'ANjou, Manuel Graña<br />
:Energy demands of diverse spiking cells from the neocortex, hippocampus and thalamus<br />
: Frontiers in Computational Neuroscience (2014) 8:41 [http://journal.frontiersin.org/Journal/10.3389/fncom.2014.00041/abstract]<br />
: DOI: 10.3389/fncom.2014.00041<br />
: JCR (2013) 2.233 (Q1 MCB, Q2 neurosciences)<br />
<br />
;Iker Mesa, Eider Sanchez, Carlos Toro, Javier Diaz, Arkaitz Artetxe, Manuel Graña, Frank Guijarro, Cesar Martinez, Jose Manuel Jimenez, Shabs Rajasekharan, Jose Antonio Alarcon, Alessandro De Mauro.<br />
:Design and Development of a Mobile Cardiac Rehabilitation System<br />
:Cybernetics and Systems: An International Journal, Volume 45 Issue 2 (2014), pp 92-108 [http://www.tandfonline.com/doi/full/10.1080/01969722.2014.874804#.UyF23OCEl48]<br />
:JCR (2012): 0.973 (Q3 CSC)<br />
<br />
;Israel Rebollo-Ruiz and Manuel Graña<br />
:An empirical evaluation of Gravitational Swarm Intelligence for Graph Coloring algorithm<br />
: Neurocomputing Volume 132, 20 May 2014, Pages 79–84 [http://www.sciencedirect.com/science/article/pii/S0925231213011041]<br />
: JCR (2011) 1.580 (Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Rosalia Dacosta-Aguayo; Manuel Graña; Marina Fernandez-Andujar; Elena López-Cancio; Cynthia Cáceres; Nuria Bargallo; Maite Barrios; Imma Clemente; Antoni Dávalos; Auer Tibor; Maria Mataró<br />
:Structural integrity of the contralesional hemisphere predicts cognitive impairment in ischemic stroke at three months<br />
: PLosONe January 2014 | Volume 9 | Issue 1 | e86119 [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0086119]<br />
: JCR (2012) 3.730, (Q1 mult. sciences) (2013) 3.534 (Q1 mult. sci.)<br />
<br />
; Ramon Moreno, Francesco Corona, Amaury Lendasse, Manuel Grana and Lenio Galvao<br />
: Extreme Learning Machines for Soybean classification in remote sensing Hyperspectral Images<br />
: Neurocomputing Volume 128, 27 March 2014, Pages 207–216 [http://dx.doi.org/10.1016/j.neucom.2013.03.057]<br />
: JCR (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Josu Maiora; Borja Ayerdi; Manuel Graña<br />
: Random forest active learning for AAA thrombus segmentation in computed tomography angiography images<br />
: Neurocomputing Volume 126, 27 February 2014, Pages 71–77 [http://www.sciencedirect.com/science/article/pii/S0925231213006978]<br />
: (2011) JCR 1.580 (Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Michal Wozniak,, Manuel Graña, Emilio Corchado, <br />
: A Survey of Multiple Classifier System as Hybrid Systems <br />
: Information Fusion Volume 16, March 2014, Pages 3–17 [http://www.sciencedirect.com/science/article/pii/S156625351300047X]<br />
: JCR (2011) 1.467 (Q2 CSAI, Q1 CSTM) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
; Michal Wozniak, Emilio Corchado, Manuel Graña<br />
:Guest Editorial: Hybrid Intelligent Fusion Systems<br />
: Information Fusion Volume 16, March 2014, Pages 2<br />
: (2011) JCR 1.467 (Q1 CSTM, Q2 CSAI) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
;Carmen Hernández , Leónia Nunes , Domingos Lopes , Manuel Graña <br />
:Data Fusion for high spatial resolution LAI estimation <br />
:Information Fusion Volume 16, March 2014, Pages 59–67 [http://www.sciencedirect.com/science/article/pii/S1566253512000395]<br />
: JCR (2010) 1.621 (2011) 1.467 (Q1 CSTM, Q2 CSAI) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
;B Ayerdi, J Maiora, A d'Anjou, M Graña<br />
:Applications of Hybrid Extreme Rotation Forests for image segmentation<br />
:International Journal of Hybrid Intelligent Systems 11 (1), 13-24<br />
<br />
;Noelia Oses, Fadi Dornaika, and Abdelmalik Moujahid<br />
:Image-based delineation and classification of built heritage masonry [http://www.mdpi.com/2072-4292/6/3/1863]`<br />
:Remote Sens. 2014, 6(3), 1863-1889; doi:10.3390/rs6031863<br />
<br />
==2013==<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna and Manuel Grana<br />
:"State-action value modeled by ELM in Reinforcement Learning for Hose Control Problems" , <br />
: International Journal of Uncertainty Fuzziness and Knowledge-Based Systems 21, supp02, 99-116 [http://www.worldscientific.com/doi/abs/10.1142/S0218488513400199]<br />
: JCR (2011) 1.781 (Q2 CSAI) (2012) 0.886 (Q3 CSAI)<br />
<br />
;Miguel A. Veganzonesa, Mihai Datcu, Manuel Graña,<br />
: Further results on dissimilarity spaces for hyperspectral images RF-CBIR<br />
: Pattern Recognition Letters Volume 34, Issue 14, 15 October 2013, Pages 1659-1668 [http://www.sciencedirect.com/science/article/pii/S0167865513002237]<br />
: JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
;Israel Rebollo-Ruiz and Manuel Graña Romay <br />
:Swarm Graph Coloring for the identification of user groups on ERP logs <br />
: Cybernetics and systems Volume 44, Issue 6-7: 489–504, (2013) [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.803891#.UhuA7Ra5fyI]<br />
: JCR 2012 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI) : JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
;Eider Sanchez, Carlos Toro, Arkaitz Artetxe, Manuel Graña, Cesar Sanin, Edward Szczerbicki, Eduardo Carrasco and Frank Guijarro<br />
:Bridging challenges of Clinical Decision Support Systems with a semantic approach . A case study on breast cancer.<br />
: Pattern Recognition Letters 34 (2013), pp. 1758-1768 [http://authors.elsevier.com/sd/article/S016786551300144X] <br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI) : JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
<br />
;Edward Szczerbicki, Manuel Graña, Jorge Posada & Carlos Toro <br />
: CURRENT RESEARCH ADVANCES AND IMPLEMENTATIONS IN SMART KNOWLEDGE-BASED SYSTEMS: PART I<br />
: Cybernetics and Systems 44(2-3):95-97 [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762247]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Edward Szczerbicki, Manuel Graña, Jorge Posada & Carlos Toro <br />
: CURRENT RESEARCH ADVANCES AND IMPLEMENTATIONS IN SMART KNOWLEDGE-BASED SYSTEMS: PART II<br />
: Cybernetics and Systems 44(2-3):184-186[http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762254]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Iñigo Barandiaran, Manuel Graña, Marcos Nieto<br />
:An Empirical Evaluation of Interest Point Detectors<br />
:Cybernetics and Systems 44(2-3):98-117 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2013.762232]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
<br />
;Arkaitz Artetxe, Eider Sanchez, Carlos Toro, Cesar Sanin, Edward Szczerbick, Manuel Graña, Jorge Posada<br />
: Impact of Reflexive Ontologies in Semantic Clinical Decision Support Systems [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762256]<br />
:Cybernetics and Systems 44(2-3):187-203 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2013.762232]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Borja Fernandez-Gauna; Ion Marques; Manuel Graña<br />
:Undesired State-Action Prediction in Multi-Agent Reinforcement Learning. Application to Multicomponent Robotic System control<br />
: Information Sciences (2013) 232:309–324 [http://www.sciencedirect.com/science/article/pii/S0020025513000133]<br />
: (2011) JCR 2.833 (Q1 CSIS) (2012) 3.643 (Q1 CSIS) (2013) 3.893<br />
<br />
;Maite Termenon, Manuel Grana, Barros-Loscertales Alfonso and Cesar Avila<br />
:"Extreme Learning Machines for feature selection and classification of cocaine dependent patients on structural MRI data " , <br />
: Neural Processing Letters December 2013, Volume 38, Issue 3, pp 375-387 [http://link.springer.com/article/10.1007/s11063-013-9277-x]<br />
: JCR (2012) 1.240 (Q2 CSAI) 2013 1.237 (Q2 CSAI)<br />
<br />
<br />
;M. Termenon, M. Graña, A. Besga, J. Echeveste, A. Gonzalez-Pinto <br />
:Lattice Independent Component Analysis feature selection on Diffusion Weighted Imaging for Alzheimer’s Disease Classification <br />
: Neurocomputing (2013) Volume 114, 19 August 2013, Pages 132–141 [http://dx.doi.org/10.1016/j.neucom.2012.08.044]<br />
: JCR (2011) 1.580: (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) <br />
<br />
;Eloy Irigoyen, , Gorka Miñano<br />
:A NARX neural network model for enhancing cardiovascular rehabilitation therapies<br />
: Neurocomputing (2013) 109(3):9–15<br />
: JCR (2010) 1.442 (2011) 1.580 (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Ion Marques, Manuel Graña<br />
: Fusion of lattice independent and linear features improving face identification<br />
: Neurocomputing Volume 114, 19 August 2013, Pages 80–85<br />
: JCR (2011) 1.580 : (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; M. Graña, A.I Gonzalez-Acuña<br />
: Learning Parsimonious Dendritic Classifiers<br />
: Neurocomputing (2013) 109(3):3–8 [http://dx.doi.org/10.1016/j.neucom.2012.03.025] [http://www.sciencedirect.com/science/article/pii/S0925231212006765]<br />
: JCR (2010) 1.442 (2011) 1.580 (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; Alexandre Savio, Manuel Graña<br />
: Deformation Based Feature Selection for Computer Aided Diagnosis of Alzheimer's Disease<br />
: Expert Systems With Applications 40 (2013), pp. 1619-1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009]<br />
: JCR (2011) 2.203 (Q1 in CSAI) (2012) (Q2 CSAI, Q1 EEE, Q1 ORMS) (2013) 1.965 (Q1 CSAI, Q2 EEE, Q1 ORMS)<br />
<br />
; F. Dornaika, A. Moujahid, and B. Raducanu<br />
: Facial expression recognition using tracked facial actions: Classifier performance analysis<br />
: Engineering Applications of Artificial Intelligence 26(1), pp.467-477 (2013).<br />
: 5-Year Impact Factor: 1.844<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br />
:Transfer Learning with Partially Constrained Models: application to reinforcement learning of linked multicomponent robot system control<br />
: Robotics and Autonomous Systems 61 (7) (2013):694–703 [http://dx.doi.org/10.1016/j.robot.2012.07.020]<br />
: JCR (2011) 1.056 (Q2 ACS, Q3 CSAI, Q3 Rob.) (2012) 1.156 (Q3 ACS, Q3 CSAI, Q2 Robotics) (2013) 1.105 (Q3 ACS, Q3 CSAI, Q3 Robotics)<br />
<br />
; Manuel Graña, Adrian Agreda<br />
:Trust models and applications in communication and multi-agent systems<br />
: International Journal of Knowledge-based and Intelligent Engineering Systems 17 (2013) 187–193<br />
<br />
;Diego Acosta · John Congote · Iñigo Barandiaran · Oscar Ruiz · Alejandro Hoyos · Manuel Graña<br />
:Tuning of Adaptive Weight Depth Map Generation Algorithms Exploratory Data Analysis and Design of Computer Experiments (DOCE)<br />
:Journal of Mathematical Imaging and Vision 47:3-12 [http://www.springer.com/alert/urltracking.do?id=Lcb6681Ma53e73Sa]<br />
: JCR (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767 (Q2 CSAI, Q1 CSSE, Q1 MA) (2013) 2.330 (Q1 CSAI, Q1 CSSE, Q1 MA) <br />
<br />
;Bosaghzadeh, A., Moujahid, A., & Dornaika, F. <br />
:Parameterless local discriminant embedding. <br />
:Neural Processing Letters August 2013, Volume 38, Issue 1, pp 53-67<br />
: JCR (2012) 1.240 2013 1.237 (Q2 CSAI)<br />
<br />
== 2012 ==<br />
<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernadez-Gauna, Manuel Graña, Fernando Oterino and Jesus Maria Larrañaga <br />
:Effect of the Lambda Parameter in Dynamic Matrix Controllers Performance<br />
: Journal of Computer and Information Technology Vol.2, No.2, pp. 81-88<br />
<br />
;A. Moujahid, A. D'Anjou<br />
:Metabolic efficiency with fast spiking in the squid axon<br />
: Front. Comput. Neurosci. 6:95. doi: 10.3389/fncom.2012.00095 [http://www.frontiersin.org/Computational_Neuroscience/10.3389/fncom.2012.00095/abstract]<br />
: 5-Year Impact Factor: 2.147<br />
<br />
;R. Moreno , D. M. Ramik , M. Graña , and K. Madani<br />
:Image Segmentation on the Spherical Coordinate Representation of the RGB Color Space [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?reload=true&arnumber=6407287]<br />
:IET Image Processing 6(9):1275 - 1283<br />
: jCR (2010) 0.862 (2011) 0.639 (Q3 EEE) (2012) 0.895 (Q3 EEE)<br />
<br />
; A. Moujahid, A. D'Anjou, B. Cases<br />
: Community structure in real-world networks from a non-parametrical synchronization-based dynamical approach. <br />
: Chaos, Solitons and Fractals: the interdisciplinary journal of Nonlinear Science, and Nonequilibrium and Complex Phenomena<br />
: Volume 45, Issues 9–10, September–October 2012, Pages 1171–1179 <br />
: JCR 5-Year Impact Factor: 1.41<br />
<br />
; A. Besga, M. Termenon, M. Graña, J. Echeveste, J. M. Perez, A. Gonzalez-Pinto<br />
: "Discovering Alzheimer's disease and bipolar disorder white matter effects building computer aided diagnostic systems on brain diffusion tensor imaging features" [http://www.sciencedirect.com/science/article/pii/S0304394012006799].<br />
: '''Neuroscience Letters''', Volume 520, Issue 1, 27 June 2012, Pages 71–76.<br />
: JCR (2011) 2.105 (Q3 Neurosciences) (2012) 2.026 (Q3 Neurosciences)<br />
<br />
;Manuel Graña, Miguel A. Veganzones<br />
: [http://www.sciencedirect.com/science/article/pii/S0031320312001483 "An Endmember-based distance for content based hyperspectral image retrieval."]<br />
: Pattern Recognition 49(9), pp 3472-3489. September 2012. [http://dx.doi.org/10.1016/j.patcog.2012.03.015 doi]<br />
: JCR (2010) 2.607 (2011) 2.292 (Q1 CSAI, Q1 EEE) (2012) 2.632<br />
<br />
;Ion Marques, Manuel Graña<br />
:Face recognition with Lattice Independent Component Analysis and Extreme Learning Machines<br />
: Soft Computing, 2012,Volume 16, Issue 9, pp 1525-1537 [http://dx.doi.org/10.1007/s00500-012-0826-4 DOI]<br />
: JCR (2010) 1.512 (2011) 1.880 (Q2 CSAI, Q1 CSIA) (2012) 1.124 (Q3 CSAI, Q3 CSIA)<br />
<br />
; Israel Rebollo, Manuel Graña, Blanca Cases<br />
:On the effect of spatial percolation on the convergence of Graph Coloring Boid Swarm<br />
: Int. Journal on Artificial Intelligence Tools (2012) 21(6): 1250015 [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/87/IJAIT-convergence-percolation-boids-2010-12-26-submitted.zip] [http://www.worldscientific.com/doi/abs/10.1142/S0218213012500157]<br />
: JCR (2010) 0.330 (2011) 0.217 (2012) 0.250 (Q4 CSAI, Q4 CSIA)<br />
<br />
; Jbabdi S, Sotiropoulos SN, Savio AM, Graña M, Behrens TE<br />
: Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems<br />
: Magnetic Resonance in Medicine (2012) 68(6):1846-1855 [http://onlinelibrary.wiley.com/doi/10.1002/mrm.24204/abstract]<br />
: ISSN 0740-3194<br />
: JCR (2010): 3.268 (2011) 2.964 (2012) 3.267 (Q1 RNMMI)<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br />
: Improving the control of single robot hose transport <br />
: Cybernetics and Systems: An International Journal, 2012, 43:4, 261-275<br />
: JCR (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
<br />
;Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
:Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: [http://dx.doi.org/10.1016/j.neucom.2011.02.024 DOI]<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br />
<br />
; Emilio Corchado, Manuel Graña, Michal Wozniak<br />
: Neurocomputing January 2012, Volume 75, Issue 1, pp. 61-63<br />
: editorial New trends and applications on hybrid artificial intelligence systems [http://www.sciencedirect.com/science/article/pii/S0925231211004206]<br />
: JCR (2010) 1.429, : (2011) JCR 1.580 (Q2 CSAI)<br />
<br />
;Miguel A. Veganzones and Manuel Graña<br />
:[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6169956&contentType=Journals+%26+Magazines&queryText%3Dspectral+spatial+cbir "A spectral/spatial CBIR system for hyperspectral images."]<br />
: IEEE Journal of Selected Topics in Applied Earth Observation and Remote Sensing 5(2), pp 488-500. April 2012.<br />
: JCR (2010) 1.140 (2011) 1.489 (2012) 2.874 (Q2 GP, Q1 ISPT, Q1 RS)<br />
<br />
;Manuel Graña and Miguel A. Veganzones<br />
:[http://asp.eurasipjournals.com/content/2012/1/64 "Endmember induction by Lattice Associative Memories and Multi-Objective Genetic Algorithms."]<br />
: EURASIP Journal on Advances in Signal Processing 2012, nº. 1 (marzo 13, 2012): 64. [http://www.biomedcentral.com/content/qcpdf/1687-6180-2012-64.pdf pdf]<br />
:JCR (2010) 1.012 (2011) 0.811 (2012) 0.807 (Q3 EEE)<br />
<br />
;Maite Termenon, Manuel Graña<br />
:A two stage sequential ensemble applied to the classification of Alzheimer's Disease based on MRI features [http://www.springerlink.com/content/x74212k073375777/]<br />
: Neural Processing Letters (2012) 35(1): 1-12 <br />
: JCR (2010) 1.088 (2012) 1.240 (Q2 CSAI)<br />
<br />
;Ivan Macia, Manuel Graña; Celine Paloc,<br />
: Knowledge Management in Image-based Analysis of Blood Vessel Structures<br />
:Knowledge and Information Systems 30(2) (2012):457-491 [http://www.springerlink.com/content/l747p10765858h1j/]<br />
: JCR Impact factor (2009) 2.211 (2010) 2.000 (2011) 2.225<br />
<br />
<br />
;Andoni Beristain, Manuel Graña, Ana I. Gonzalez<br />
:A Pruning Algorithm for Stable Voronoi Skeletons<br />
: Journal of Mathematical Imaging and Vision (2012) 42:225–237 <br />
: JCR (2009) 1.437 (2010) 1.244 (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Z. Echegoyen, J.M. Lopez-Guede, B. Fernandez-Gauna and M. Graña<br />
: Visual Servoing of Legged Robots<br />
: Journal of Mathematical Imaging and Vision 42(2) (2012): 196-211 [http://www.springerlink.com/content/c4x1r11188l31083/ doi]<br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Peter Sussner, Estevão L.Esmi, Ivan Villaverde, Manuel Graña<br />
:The Kosko Subsethood FAM: Mathematical Background, Properties, and Some Experimental Results in Computer Vision<br />
: Journal of Mathematical Imaging and Vision (2012) 42:134–149 <br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Manuel Graña, Emilio Corchado, Michal Wozniak<br />
:Special Issue on Hybrid Artificial Intelligent Systems <br />
: Journal of Mathematical Imaging and Vision: Volume 42, Issue 2 (2012), Page 101-102 [http://www.springerlink.com/content/457024354t87u21u/ doi]<br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011). <br />
:Experiments for the selection of sub-word units in the Basque context for semantic tasks, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 49-56<br />
: DOI 10.1007/s10772-011-9109-1<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011) <br />
:Semantic Speech Recognition in the Basque context Part I: Cross-lingual approaches, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 33-40<br />
: DOI 10.1007/s10772-011-9111-7<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011). <br />
:Semantic Speech Recognition in the Basque context Part II: Language Identification for under-resourced languages, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 41-47<br />
: DOI 10.1007/s10772-011-9114-4<br />
<br />
;Juan José Valera García Vicente Gómez Garay, Eloy Irigoyen Gordo, Fernando Artaza Fano, Mikel Larrea Sukia<br />
:Intelligent Multi-Objective Nonlinear Model Predictive Control (iMO-NMPC): Towards the ‘on-line’ optimization of highly complex control problems<br />
:Expert Systems with Applications, Volume 39, Issue 7, 1 June 2012, Pages 6527–6540<br />
: JCR (2010) 1.924<br />
<br />
;Carlos Toro, Eider Sanchez, Eduardo Carrasco, Leonardo Mancilla-Amaya, Cesar Sanín, Edward Szczerbicki, Manuel Graña, Patricia Bonachela, Carlos Parra, Gloria Bueno, Frank Guijarro<br />
:USING SET OF EXPERIENCE KNOWLEDGE STRUCTURE TO EXTEND A RULE SET OF CLINICAL DECISION SUPPORT SYSTEM FOR ALZHEIMER'S DISEASE DIAGNOSIS [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/465/ToroSanchez2012.pdf]<br />
:Cybernetics and Systems: An International Journal, 2012. Volume 43, Issue 2, pp 81-95 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2012.654070 doi]<br />
:JCR (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
<br />
Carlos Toro, Javier Vaquero, Manuel Graña, Cesar Sanín, Edward Szczerbicki & Jorge Posada<br />
:BUILDING DOMAIN ONTOLOGIES FROM ENGINEERING STANDARDS [http://www.tandfonline.com/doi/full/10.1080/01969722.2012.654073#.VDGS9ufhpiU]<br />
;Cybernetics and Systems 2012, 43(2): 114-126<br />
:JCR (2010) 0.662 (2011) 1.182 (Q2 CSC) (2012) 0.973<br />
<br />
<br />
;Blanca Cases, Israel Rebollo, Manuel Graña <br />
:A Spatial-social-logical model explaining human behavior in emergency situations <br />
: Logic Journal of the IGPL 20(3):625-633<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
;Josune Gallego, Carmen Hernandez, Manuel Graña<br />
:A Morphological Cellular Automata based on Morphological Independence <br />
: Logic Journal of the IGPL 20(3):617-624<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
; Manuel Graña, Emilio Corchado, Michal Wozniak<br />
:Special issue: HAIS 2010<br />
: Logic Journal of the IGPL 20(3):533-534<br />
: doi: 10.1093/jigpal/jzr001 [http://jigpal.oxfordjournals.org/content/early/2011/02/24/jigpal.jzr001.full.pdf]<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
<br />
;G. García, J. Maiora A. Tapia, M. De Blas<br />
:Evaluation of Texture for Classification of Abdominal Aortic Aneurysm After Endovascular Repair<br />
:Journal of Digital Imaging 25(3):369-376<br />
:(ISI JCR 0.96) (2011) 1.255 (Q3 RNMMI)<br />
<br />
; Manuel Graña, Ivan Villaverde, Jose Manuel Lopez-Guede, Borja Fernandez-Gauna<br />
: Lattice Independent Component Analysis for Appearance Based Mobile Robot Localization<br />
: Neural Computing and applications, 21(5) (2012): 1031-1042<br />
: Indice de impacto JCR (2009) 0.812 (2010) 0.563 (2011) 0.699 (Q3 CSAI) (2012) (Q3 CSAI) (2012) 1.168<br />
<br />
==2011==<br />
<br />
; Josu Maiora, Manuel Graña<br />
: A computer aided diagnostic system for survival analysis after EVAR treatment<br />
: Journal of Medical Informatics & Technologies, (2011) 18:51-58<br />
<br />
;Ivan Macia; Manuel Graña; Josu Maiora; Celine Paloc; Mariano de Blas<br />
:Detection of Type II Endoleaks in Abdominal Aortic Aneurysms After Endovascular Repair<br />
:Computers in Biology and Medicine 41(10): 871-880 [http://dx.doi.org/10.1016/j.compbiomed.2011.07.005]<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112 (2011) 1.089 (Q3 B, Q3 CSIA, Q3 EB, Q4 MCB)<br />
<br />
;M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br />
:Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson’s correlation<br />
:Neuroscience letters,Volume 502, Issue 3, 20 September 2011, Pages 225-229 [http://dx.doi.org/10.1016/j.neulet.2011.07.049 on line]<br />
: Indice de impacto JCR (2010) 2.055 (2011) 2.105 (Q3 Neurosciences)<br />
<br />
; Manuel Graña, Borja Fernandez-Gauna, Jose Manuel Lopez-Guede<br />
:Cooperative Multi-Agent Reinforcement Learning for Multi-Component Robotic Systems: guidelines for future research<br />
: Paladyn . Journal of Behavioral Robotics. [http://www.editorialmanager.com/paladyn/mainpage.html] 2(2):71-81 [[media:Draft-2011-07-01-Paladyn.MARLReview.Grana.Borja.pdf|draft]]<br />
<br />
;A. Moujahid, A. d' Anjou, F. J. Torrealdea, and F. Torrealdea<br />
:Energy and information in Hodgkin-Huxley neurons<br />
:Phys. Rev. E 83, 031912 (2011)<br />
:Impact Factor: 2.400<br />
<br />
;A. Moujahid, A. d' Anjou, F. J. Torrealdea, and F. Torrealdea<br />
:Efficient synchronization of structurally adaptive coupled Hindmarsh-Rose neurons<br />
:Chaos, Solitons and Fractals: the interdisciplinary journal of Nonlinear Science, and Nonequilibrium and Complex Phenomena, DOI:10.1016/j.chaos.2011.07.005 (2011)<br />
:Impact Factor: 1.72<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI]<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112 (2011) 1.089 (Q3 B, Q3 CSIA, Q3 EB, Q4 MCB)<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez Guede, Ekaitz Zulueta, Zelmar Echegoyen, Manuel Graña<br />
: Basic Results and Experiments on Robotic Multi-Agent System for Hose Deployment and Transportation <br />
: International Journal of Artificial Intelligence (IJAI) 6(S11):183-202 [http://www.ceserp.com/cp-jour/index.php?journal=ijai&page=article&op=view&path%5B%5D=923]<br />
<br />
;Ramón Moreno, Manuel Graña, Alicia d’Anjou<br />
:Illumination Source Chromaticity Estimation Based on Spherical Coordinates in RGB<br />
: Electronics letters, (2011) 47(1):28–30 [http://dx.doi.org/10.1049/el.2010.2735 DOI]<br />
: An implementation can be found in [[Illumination Source Chromaticity Estimation (ISC)]] <br />
: ISI JCR (2009) 0.970<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181 (2011), pp. 1910-1928 <br />
:Impact factor JCR (2008): 3.095 (2009) 3.291 (2010) 2.836 (2011) 2.833 (Q1 CSIS) (2012) 3.643 (Q1 CSIS)<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
;Javier Vaquero, Carlos Toro, Manuel Graña<br />
: Preserving Virtual Engineering Knowledge thorough the Product Life Cycle<br />
: Cybernetics & Systems 42 (2): 124-138. <br />
: ISSN: 0196-9722 (Print), 1087-6553 (Online), Taylor and Francis publishers (2011)<br />
: ISI JCR (2009) 0.780 (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
: [[media:Draft jvaquero 2010.pdf|draft of the paper]]<br />
<br />
<br />
; Ivan Villaverde, Manuel Graña<br />
:Neuro-Evolutionary mobile robot egomotion estimation with a 3D ToF camera<br />
: Neural Computing and applications 20(3): 345-354, [http://dx.doi.org/10.1007/s00521-010-0384-6 DOI]<br />
: ISI JCR (2008) 0.767 (2009) 0.812 (2010) 0.563 (2011) 0.699 (Q3 CSAI)<br />
<br />
==2010==<br />
<br />
; Miguel Angel Veganzones, Leonia Nunes, Domingos Lopes, Carmen Hernández and Manuel Graña<br />
: Implementation of an user-friendly interface of the Forest-BGC model for regional/global-scale researches<br />
: [http://www.inrb.pt/inia/silva-lusitana SILVA LUSITANA], Año XVIII, December 2010.<br />
: Instituto Nacional de Investigaçao Agraria (Eds.); Portugal.<br />
: ISSN 0870-6352.<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Ekaitz Zulueta, Manuel Graña <br />
:Learning hose transport control with Q-learning <br />
: Neural Network World 20(7):913-923 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511<br />
<br />
;Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br />
:Neural classifiers for schizophrenia diagnostic support on diffusion imaging data<br />
: Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511 (2011) 0.646 (Q4 CSAI)<br />
<br />
;E. Irigoyen, M. Larrea, J. Valera, V. Gómez, F. Artaza<br />
:A Neuro‐Genetic Control Scheme application for industrial R^3 workspaces<br />
: Neural Network World 20(7):811-824 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511<br />
<br />
;Maiora, J., Garcia, G., Tapia, A., Macia, I., Legarreta, J.H., Paloc, C., De Blas, M. & Grana, M.<br />
:Thrombus Change Detection After Endovascular Abdominal Aortic Aneurysm Repair<br />
:International Journal of Computer Assisted Radiology and Surgery<br />
:Springer-Verlag, 2010, Vol. 5 (Suppl 1), pp. S15<br />
: IF JCR (2011) 1.481<br />
<br />
; Iñigo Barandiaran, Celine Paloc, Manuel Graña<br />
:Real-time Optical Markerless Tracking for Augmented Reality Applications<br />
:J Real-Time Image Processing 5(2):129-138 [http://www.springerlink.com/content/1861-8200], doi [http://www.springerlink.com/content/x281360862565132/]<br />
: Impact factor JCR (2010): 0.962 (2011) 1.020 (Q3 CSAI, Q3 EEE, Q2 ISPT)<br />
<br />
;Z. Echegoyen, I. Villaverde, R. Moreno, M. Graña, A. d’Anjou<br />
:Linked Multi-Component Mobile Robots: modeling, simulation and control<br />
: Robotics and Autonomous Systems 58(12) : 1292-1305<br />
:Impact Factor (2008): 1.214 (2009) 1.361 (2010) 1.313<br />
: DOI [http://dx.doi.org/10.1016/j.robot.2010.08.008]<br />
<br />
; Ramón Moreno, Manuel Graña, Ekaitz Zulueta<br />
:An RGB Color Gradient following Color Constancy Preservation<br />
: Electronics Letters 46(13): 908--910<br />
: ISI JCR (2009) 0.970 (2010) 1.001<br />
<br />
;Richard J Duro; Manuel Graña Romay; Javier de Lope Asiain,<br />
:On the Potential Contributions of Hybrid Intelligent Approaches to Multicomponent Robotic System Development [[media:14-04-09-Hais2008-Duro.pdf|draft]] <br />
: Information Sciences 180 (14):2635-2648<br />
: DOI [http://dx.doi.org/10.1016/j.ins.2010.02.005]<br />
: Impact factor JCR (2008): 3.095 (2009) 3.291 (2010) 2.833<br />
<br />
; Andoni Beristain, Manuel Graña<br />
: A pruning algorithm for Voronoi Skeletons<br />
: Electronics Letters 46(1):39-41 <br />
:ISI JCR (2008) 1.140 (2009) 0.970 (2010) 1.001<br />
<br />
;Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández. <br />
:A Lattice Computing approach for On-line fMRI analysis, <br />
:Image and Vision Computing 28(7):1155-1161, July 2010, <br />
: DOI http://dx.doi.org/10.1016/j.imavis.2009.10.004<br />
:ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br />
<br />
==2009==<br />
<br />
;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou, Abdelmalik Moujahid, N. Vélez de Mendizábal<br />
:Energy efficiency of information transmission by electrically coupled neurons<br />
:Biosystems, Volume 97, Issue 1, July 2009, Pages 60-71<br />
:Impact factor: 1.646<br />
<br />
;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou<br />
:Energy consumption and information transmission in model neurons<br />
:Chaos, Solitons & Fractals, Volume 40, Issue 1, 15 April 2009, Pages 60-68<br />
:Impact factor: 3.025 (2009) 3.315<br />
<br />
;Maite García-Sebastián, Ana Isabel González, Manuel Graña<br />
:An Adaptive Field Rule for Non-parametric MRI Intensity Inhomogeneity Estimation Algorithm [http://dx.doi.org/10.1016/j.neucom.2008.12.034]<br />
:Neurocomputing 72 (2009) 3556–3569<br />
:DOI: doi:10.1016/j.neucom.2008.12.034<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
:JCR (2008) 1.234<br />
<br />
;Abdelmalik Moujahid, Blanca Cases, F.J. Olasagasti<br />
:Consensus dynamics in a dolphin social network<br />
:CEUR Workshop Proceedings, vol-442,2 (ISSN 1613-0073) <br />
<br />
;Blanca Cases, F.Javier Olasagasti, Abdelmalik Moujahid, Alicia D'Anjou <br />
:Swarm Intelligence: una aplicación a la toma de decisiones colectivas<br />
:CEUR Workshop Proceedings, vol-442,6 (ISSN 1613-0073) <br />
<br />
;Andoni Beristain, Manuel Graña.<br />
:Emotion Recognition Based on the Analysis of Facial Expressions.<br />
: New Mathematics and Natural Computation (NMNC), 5(2) pp.513-534 (world scientific press [http://www.worldscinet.com/nmnc/nmnc.shtml])<br />
<br />
;Manuel Graña, Ivan Villaverde, José Orlando Maldonado, Carmen Hernandez<br />
:Two Lattice Computing approaches for the unsupervised segmentation of Hyperspectral Images<br />
: Neurocomputing, 72(2009):2111–2120<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI 10.1016/j.neucom.2008.06.026<br />
<br />
; Manuel Graña<br />
: Special issue on the Lattice Computing and Natural Computing track from JCIS 2007<br />
: Neurocomputing 72:2065–2066<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI http://dx.doi.org/10.1016/j.neucom.2008.11.021<br />
<br />
;Maite García-Sebastián, Carmen Hernandez, Alicia d'Anjou<br />
:Robustness of an Adaptive MRI Segmentation Algorithm Parametric Intensity Inhomogeneity Modeling [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V10-4V59VW3-8&_user=984461&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000049823&_version=1&_urlVersion=0&_userid=984461&md5=706b7323a65e4074fdf4015bcb1a34d3]<br />
:Neurocomputing 72 (2009) 2146-2152. [[BibTeX]]<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI 10.1016/j.neucom.2008.07.014<br />
<br />
==2008==<br />
<br />
;Pablo González-Nalda and Blanca Cases<br />
:Topos: Spiking neural networks for temporal pattern recognition in complex real sounds<br />
:Neurocomputing, (2008) 71(4-6) :721-732<br />
: JCR 2008 1.234 JCR 2009 1.440<br />
<br />
;Ivan Villaverde, Zelmar Echegoyen, Manuel Graña<br />
: Neuro-Evolutive system for ego-motion estimation with a 3D camera<br />
: Australian Journal of Intelligent Information Systems, 10(1):59-70<br />
: ISSN 1321-2133<br />
<br />
;Israel Rebollo, Manuel Graña<br />
: Aplicaciones de RFID<br />
: Novatica,195:42-46, sept. 2008, <br />
<br />
; Jose Orlando Maldonado, Manuel Graña<br />
:Recycled paper visual indexing for quality control<br />
: Expert Systems with Applications, 45(4) pp 8807–8815<br />
: ISI JCR 2007 1.177- 2008 2.596 (Q1 CSAI, Q1 EEE, Q1 ORMS)<br />
: http://dx.doi.org/10.1016/j.eswa.2008.11.023<br />
<br />
;Sanin, C., Toro, C., Vaquero, J., Szczerbicki, E. Posada, J. <br />
:Implementing Decisional DNA in Industrial Maintenance by a knowledge SOUPA Extension <br />
: Systems Science, Vol. 33 No. 2:61-68 <br />
: ISSN: 0137-1223, Wroclaw, Poland 2008.<br />
<br />
;Toro, C ,Sanin, C. / Szczerbicki, E. / Posada, J. <br />
: Reflexive Ontologies: Enhancing Ontologies with self-contained queries <br />
:Cybernetics and Systems: An International Journal, 39: 1–19 <br />
:ISSN: 0196-9722 print, 1087-6553 online, USA 2008.<br />
: ISI JCR 2006 0.964<br />
<br />
;Eloy Irigoyen, Miguel Pinzolas<br />
:Numerical bounds to assure initial local stability of NARX multilayer perceptrons and radial basis functions<br />
:Neurocomputing, 72; 539-547<br />
:ISSN: 0925-2312<br />
:ISI JCR 2008 1.745<br />
:http://dx.doi.org/10.1016/j.neucom.2007.11.018<br />
<br />
==2007==<br />
<br />
;Maite Garcia-Sebastián, Elsa Fernandez, M. Graña, Francisco J. Torrealdea<br />
:''A parametric gradient descent MRI intensity inhomogeneity correction algorithm'' (pdf [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V15-4NT84HV-2&_user=984461&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_searchStrId=940574918&_rerunOrigin=google&_acct=C000049823&_version=1&_urlVersion=0&_userid=984461&md5=112b05574e5ac5481a15297bb531da15])<br />
:Pattern Recognition Letters 28(13):1657-1666<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005, 2006, 2007) 0.552, 1.138 0.952 0.853<br />
<br />
;Ivan Villaverde, Alicia d'Anjou, M. Graña<br />
:''Morphological Neural Networks and Vision Based Simultaneous Localization and Mapping''<br />
:Integrated Computer-Aided Engineering 14(4):355-363<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.444, JCR 2006 0.236, JCR 2007 0.113, JCR 2008 0.617<br />
<br />
;Toro, C. / Posada, J / Oyarzun, J / Falcón, J<br />
: Supporting the CAD Structural Design Process with knowledge based tools, <br />
:Journal of Cybernetics and systems, <br />
:ISBN 1087-6553 (electronic) 0196-9722 (paper), Taylor and Francis publishers, 2007.<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.681, JCR 2006 0.964, JCR 2007 0.655<br />
<br />
;Sanin, C. / Szczerbicki, E. / Toro, C. <br />
: An OWL Ontology of Set of Experience Knowledge Structure <br />
: Journal of Universal Computer Science , Volume 13, number 2, pages 209-223, 2007<br />
<br />
; EKAITZ ZULUETA GUERRERO; PEDRO MARIA IRIONDO BENGOA; JOSE MANUEL LOPEZ GUEDE; Ander Etxeberria <br />
: Entropy Analysis for Stochastic System Control<br />
: INTERNATIONAL JOURNAL OF FACTORY AUTOMATION, ROBOTICS AND SOFT COMPUTING 2(2): 88-92<br />
<br />
==2006==<br />
<br />
;F.J. Torrealdea, A. d'Anjou, Manuel Graña, C. Sarasola<br />
:''Energy aspects of the synchronization of model neurons''<br />
: Physical Review E 74:011905<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2006 2.438<br />
<br />
;Toro, C. Posada, J Wundrak, S Stork, A<br />
: Improving Virtual Reality Applications in CAD through Semantics,<br />
:The International Journal of Virtual Reality, 2006, volume 5, Number 4, pages 39-46<br />
<br />
;Posada, J. / Wundrak, S. / Toro, C. / Stork, A. <br />
: Using Ontologies and STEP standards for the semantic simplification of CAD models in different engineering domains <br />
: Journal of Applied Ontology, Volume 1, Number 3-4/2006, pp. 263-279<br />
<br />
==2005==<br />
<br />
; Gurutze Arzamendi, Alicia d'Anjou, Manuel Graña, José R. Leiza, José M. Asua<br />
: ''Model reduction in emulsion polymerization using hybrid first principles/artificial neural networks models 2a Long Chain Branching Kinetics''<br />
: Macromolecular Theory and Simulations 14:125-132<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 1.544<br />
<br />
; C. Sarasola, A. d'Anjou, F.J. Torrealdea, Manuel Graña<br />
: ''Minimization of the energy flow in the synchronization of nonindentical chaotic systems''<br />
: Physical Review E 72:026223<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 2.418<br />
<br />
;C. Sarasola, , A. d'Anjou, F. J. Torrealdea and A. Moujahid<br />
: ''Energy-like functions for some dissipative chaotic systems.'' <br />
: Int. J. Bifurcation and Chaos 15(8), 2507-2521<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.845<br />
<br />
; A. d'Anjou, C. Sarasola, , F. J. Torrealdea. <br />
: ''On the characterization of different synchronization stages by energy considerations.''<br />
: Journal of Physics: Conference Series, 23, 238–251<br />
<br />
;Blanca Cases and Manuel Alfonseca<br />
:Towards a proof of the decidability of the momentary stagnation of the growth function of D0L systems<br />
:Theoretical Computer Science, Volume 341, Issues 1-3, 5 September 2005, Pages 247-262<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.743<br />
<br />
;Posada, J. / Wundrak, S. / Toro, C. / Stork, A. <br />
: Using Ontologies and STEP standards for the semantic simplification of CAD models in different engineering domains <br />
: Journal of Applied Ontology, Volume 1, Number 3-4/2006, pp. 263-279<br />
<br />
==2004==<br />
<br />
; M. Graña, J. Gallego, C. Hernandez<br />
: ''A Single Individual Evolutionary Strategy for Endmember Search in Hyperspectral Images.''<br />
:Information Sciences, Int. J 161(3-4):181-197<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2003, 2005) 0.264, 0.447, 0.723<br />
<br />
;B. Raducanu, Manuel Graña, F.X. Albizuri, A. d'Anjou<br />
: ''A Probabilistic Hit-and-Miss Tranform for Face Localization''<br />
:Pattern Análisis and Applications 7:117-127<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 0.803<br />
<br />
;Elsa Fernandez, Manuel Graña, Jesús Ruiz-Cabello<br />
: ''On a Gradient Based Evolution Strategie For Parametric Illumination Correction''<br />
:Electronics Letters 40(9):531-532<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 0.968<br />
<br />
;Cecilia Sarasola, Francisco J. Torrealdea, Alicia d'Anjou, A. Moujahid, Manuel Graña<br />
: ''Energy balance in feedback synchronization of chaotic systems''<br />
: Physical review E 69-011606<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 2.352<br />
<br />
==2003==<br />
<br />
; F. Xabier Albizuri, Manuel Graña, Bogdan Raducanu <br />
:Statistical transmission delay guarantee for nonreal-time traffic multiplexed with real-time traffic<br />
:Computer Communications 26 (2003) 1365–1375<br />
: Indicadores de calidad, JCR (2005) 0.556 (2009) 0.933<br />
<br />
; M. Graña, P. Sussner, G.X. Ritter<br />
: [[media:Grana-sussner-ritter-2003-mathware.pdf|Innovative Applications of Associative Morphological Memories]]<br />
: Mathware & Soft Computing 10(3):155-168<br />
: [http://ic.ugr.es/Mathware/index.php/Mathware/issue/view/6 journal web page]<br />
<br />
;A. d'Anjou, F. J. Torrealdea, J.R. Leiza, J.M. Asua, G. Arzamendi <br />
: ''Model reduction in emulsion polymerization using Hybrid First-Principles/Artificial Neural Networks models''<br />
: Macromolecular Theory and Simulation 12:42-56<br />
: indicadores de calidad, JCR (2005) 1.544 (2006) 1.073 (2007) 1.792 (2008) 1.912 (2009) 1.683<br />
<br />
; C. Sarasola, F.J. Torrealdea, A. d'Anjou, A. Moujahid and M. Graña<br />
: ''Feedback synchronization of chaotic systems''<br />
: Int. J. Bifurcation and Chaos 13(1):177-191<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.014<br />
<br />
;B. Raducanu, M. Graña, F.X. Albizuri<br />
: ''Morphological Scale Spaces and Associative Morphological Memories: Results on Robustness and Practical Applications''<br />
: Journal of Mathematical Imaging and Vision 9(2):113-131<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2003, 2005) 0.617,2.197<br />
<br />
;C. Sarasola, F.J. Torrealdea, A. d’Anjou, A. Moujahid, M. Graña,<br />
: ''Nonzero error synchronization of chaotic systems via dynamic coupling''<br />
: Physica D 177(1-4):39-49<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2002,2003:1.144,1.014<br />
<br />
;R. Perez de Alejo, J. Ruiz-Cabello, M. Cortijo, I. Rodriguez, I. Echave, J. Regadera, J. Arrazola, P. Avilés, P. Barreiro, D. Gargallo, M. Graña<br />
: ''Computer- Assisted Enhanced Volumetric Segmentation Magnetic Resonance Imaging Data Using a Mixture of Artificial Neural Networks''<br />
: Magnetic Resonance Imaging 21:901-912<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.420<br />
<br />
; JOSE MARIA GONZALEZ DE DURANA GARCIA; TEODORO RICO PASTRANA; EKAITZ ZULUETA GUERRERO<br />
: HYBRID MODELING OF OPEN LOOP DC-DC CONVERTERS.<br />
: FACING 11(2): 41--47<br />
<br />
==2002==<br />
<br />
;C. Sarasola, F.J. Torrealdea, A. d'Anjou, M. Graña<br />
: ''Cost of synchronizing different chaotic systems''<br />
: Mathematics and Computers in Simulation 58:309-327<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2005): 0.253,0.554<br />
<br />
; Jesús Ruiz-Cabello, Javier Regadera, Carmen Santisteban, Manuel Graña, Rigoberto Pérez de Alejo, Imanol Echave, Pablo Avilés, Ignacio Rodriguez, Inmaculada Santos, Domingo Gargallo, Manuel Cortijo<br />
: ''Monitoring actute inflammatory processes in the mouse muscle by MR imaging and spectroscopy: a comparision with pathological results''<br />
: NMR in Biomedicine 15:204-214<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2002,2005) 2.160, 2.469<br />
<br />
==2001==<br />
<br />
; B. Raducanu, M. Graña, F.X. Albizuri, A. D'Anjou<br />
: ''Face localization based on the morphological multiscale fingerprints''<br />
: Pattern Recognition Letters 22:359-371<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005) 0.552, 1.138<br />
<br />
;A.I. Gonzalez, M. Graña, J. Ruiz-Cabello, A. d'Anjou<br />
: ''Experimental results of an Evolution-based Adaptation Strategy for VQ Image Filtering'' [[media:IS2001_Evolution_VQfilter.pdf|pdf]]<br />
: Information Sciences, Int. J. 133 (3-4):249-266<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2003, 2005) 0.264, 0.447, 0.723<br />
<br />
; M.C. Hernandez, F.X Albizuri, A. d'Anjou, M. Graña, F.J. Torrealdea<br />
: ''Efficient solution of MAX-SAT and SAT via higher order Boltzmann Machines''<br />
: Investigacion Operacional 22(1):67-78<br />
:Indicadores de calidad (Índice de Impacto o similares): <br />
:Editorial y Lugar de publicación: Dept. Matematica Aplicada, Fac. Matematica y Computación, Universidad de la Habana<br />
<br />
;Israel Rebollo, Manuel Graña y Carmen Hernández<br />
:APLICACION DE ALGORITMOS ESTOCASTICOS DE OPTIMIZACION AL PROBLEMA DE LA DISPOSICION DE OBJETOS NO-CONVEXOS. [[http://rev-inv-ope.univ-paris1.fr/files/22201/IO-22201-11.pdf]]<br />
: Investigacion Operacional 22(2):184-192<br />
:Indicadores de calidad (Índice de Impacto o similares): <br />
:Editorial y Lugar de publicación: Dept. Matematica Aplicada, Fac. Matematica y Computación, Universidad de la Habana<br />
<br />
; A. d'Anjou,C. Sarasola, F.J. Torrealdea, R. Orduna, M. Graña<br />
: ''Parameter adaptive identical synchronization disclosing Lorenz chaotic mask''<br />
: Physical Review E E63-046213<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 2.202, (JCR 2002 2.397)<br />
<br />
; S. O. Anchorena, B. Cases<br />
: ''Modeling Chaotic Series by Simple Eco-Grammar Systems with Reproduction, Death and Maturation of Agents.''<br />
: Grammars, vol. 6 num. 3, pp. 155-168 (2003)<br />
: EE: http://www.springerlink.com/content/n68251124147700r/<br />
<br />
==2000==<br />
<br />
;A.I. Gonzalez, M. Graña, F.X. Albizuri, A. D'Anjou, F.J. Torrealdea<br />
: A Near Real-Time Evolution-based Adaptation Strategy for Dynamic Color Quantization of Image Sequences [[media:IS2000_Evolution_CQ_image_sequence.pdf|pdf]]<br />
: Information Sciences, Int. J. 122:161-183<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2003, 2005) 0.447, 0.723<br />
<br />
;J. Ruiz Cabello, I Rodriguez, P. Avilés, M. Graña, I. Echave, J. Regadera, D. Gargallo, M. Cortijo<br />
: Magnetic resonance imaging to monitor the biology of inflammation<br />
: European Biophysics Journal 29(4-5):363<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2005) 1.917,1.811 <br />
:ISSN: 0175-7571<br />
<br />
;I Rodriguez, M. Graña, I. Echave, P. Barreiro, M. Cortijo, J. Ruiz Cabello<br />
: MR image processing using neural networks and vector quantization<br />
: Magnetic Resonance Materials in Physics, Biology and Medicine (MAGMA) 11 (supl. 1):143<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.836<br />
<br />
;F.X. Albizuri, A.I. Gonzalez, M. Graña, A. D'Anjou<br />
: ''Neural learning for distributions on categorical data''[[media:Albizuri2000_Neural_learning.pdf|pdf]]<br />
: Neurocomputing 34:1-9<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005) 0.534, 0.790<br />
<br />
==1999==<br />
<br />
;J.A. Lozano, P. Larrañaga, M. Graña, F.X. ALbizuri<br />
: ''Genetic Algorithms: bridging the convergence gap''<br />
: Theoretical Computer Science 229:11-22<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.743<br />
<br />
;A.I. Gonzalez, M. Graña, M. Cottrell<br />
: ''Basic competitive neural networks as adaptive mechanisms for non-stationary color quantization'' [[media:Ai-gonzalez-neural-computing-appl-1999.pdf|pdf]]<br />
: Neural Computing and Applications 8: 347-367<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.403<br />
<br />
==1998==<br />
<br />
; A. I. Gonzalez, M. Graña<br />
: ''Una estrategia evolutiva para clustering no estacionario''<br />
: Inteligencia Artificial, Revista Iberoamericana de Inteligencia Artificial, 2(5): 68-73<br />
<br />
;A. I. Gonzalez, M. Graña, A. D'Anjou, F.X. Albizuri, F.J Torrealdea<br />
: ''A comparison of experimental results with a Evolution Strategy and Competitive Neural Networks for near real-time Color Quantization of image sequences'' [[media:AppInt1998_Evol_CNN_CQ_sequences.pdf|pdf]]<br />
: Applied Intelligence 8 (1): 43-51<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 0.9<br />
<br />
==1997==<br />
<br />
; M. Graña, A. D´Anjou, F.J. Torrealdea<br />
: User expectations for the intelligent blackboard [[media:M-grana-displays-1997.pdf|pdf]]<br />
: Displays 17 (3-4): 143-146<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor: 0.947, JCR 2007 1.179<br />
<br />
; A. I. Gonzalez, M. Graña, A. D´Anjou, F.X. Albizuri, M. Cottrell<br />
: A sensitivity analysis of the Self Organizing Map as an Adaptive One-pass Non-stationary Clustering algorithm: the case of Color Quantization of image sequences [[media:NPL1997_SOM_onepass_nonstat_clustering.pdf|pdf]]<br />
: Neural Processing Letters 6: 77-89<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 0.701<br />
<br />
; F.X. Albizuri, A. D'Anjou, M. Graña, P. Larrañaga<br />
: Structure of the high-order Boltzmann Machine from Independence Maps<br />
: IEEE trans. Neural Networks 8 (6): 1351-1358<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 2.205<br />
<br />
; M. Graña, A. D'Anjou , F.X. Albizuri, M. Hernandez, F. J. Torrealdea, A.I. Gonzalez<br />
: Experiments of fast learning with High Order Boltzmann Machines [[media:Grana-HOBM-appl-int-1997.pdf|pdf]]<br />
: Applied Intelligence 7 (4): 287-303<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 0.569<br />
<br />
==1996==<br />
<br />
; F.X. Albizuri, A. D'Anjou , M. Graña,J.A. Lozano<br />
: Convergence properties of High-Order Boltzmann Machines<br />
: Neural Networks 9(9): 1561-1567<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 1.665<br />
<br />
;M. Graña, A. D'Anjou , F.X. Albizuri, J.A. Lozano, P. Larrañaga, Y. Yurramendi, M. Hernandez, J.L. Jimenez, F. J. Torrealdea, M. Poza, A.I. Gonzalez<br />
: Experimentos de aprendizaje con Máquinas de Boltzmann de alto orden [[media:Inf-y-automatica-exp-HOBM-96.pdf|draft]]<br />
: Informática y Automática 29(4): 42-57<br />
<br />
==1995==<br />
<br />
;A. I. González , M. Graña - A. D'Anjou<br />
: An analysis of the GLVQ algorithm [[media:IEEENN95_analysis_GLVQ.pdf|pdf]]<br />
: IEEE Transactions on Neural Netwoks 6 (4): 1012-1016<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 2.205<br />
<br />
; F. X. Albizuri - A. D'Anjou - M. Graña - F. J. Torrealdea - M. C. Hernández<br />
: The high order Boltzmann machine: learned distribution and topology<br />
: IEEE Transactions. on Neural Networks 6 (3): 767-770<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 2.205<br />
<br />
; M. Graña - A. D'Anjou - A. I. González - F. X. Albizuri - M. Cottrell<br />
: Competitive stochastic neural networks for vector quantization of images [[media:Neurocomputing95_CSNN_VQ.pdf|pdf]]<br />
: Neurocomputing 7: 187-195<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 0.790<br />
<br />
==1993==<br />
<br />
;Alicia D'Anjou - Manuel Graña - Fco. Javier Torrealdea - Mª Carmen Hernández<br />
: Solving satisfiability via Boltzmann machines [[media:Danjou-pami-1993.pdf|pdf]]<br />
: IEEE Transactions on pattern analysis and machine intelligence, 15:514-521<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 2.923<br />
<br />
==1992==<br />
<br />
;Alicia D'Anjou - Manuel Graña - Fco. Javier Torrealdea - Mª Carmen Hernández<br />
: Máquinas de Boltzmann para la resolución del problema de la satisfacibilidad en el cálculo proposicional<br />
: Revista Española de Informática y Automática 24: 40-49<br />
<br />
==1987==<br />
<br />
;Luis M. Alonso - Manuel Graña<br />
: Formal techniques and concurrent systems<br />
: Communications ACM 30: 752-753<br />
Indicadores de calidad (Índice de Impacto o similares): ISI JCR (2008) 2.646<br />
<br />
==1986==<br />
<br />
;Manuel Graña - Fco. Javier Torrealdea<br />
: Hierarchically structured Systems [[media:Grana-torrealdaea-1986.zip|scan]] [[media:Grana-torrealdea-1986.pdf|scan compressed]]<br />
: European Journal of Operational Research 25:20-26<br />
Indicadores de calidad ISI JCR: (2008) 1.627, <br />
<br />
; Fco. Javier Torrealdea - Manuel Graña - Fernando Ferreres<br />
: A comparison between stochastic and deterministic simulation<br />
: Advances in Modelling and Simulation (AMSE press) 5:15-32<br />
:Indicadores de calidad (Índice de Impacto o similares):<br />
<br />
; T. Alvarez - J. J. Dolado - M. Graña - I. Sukia - F. J. Torrealdea<br />
: Una versión de GPSS<br />
: Revista Española de Informática y Automática 19:45-59<br />
: Indicadores de calidad (Índice de Impacto o similares):<br />
<br />
==1984==<br />
<br />
;Fco. Javier Torrealdea - Manuel Graña<br />
: Some ideas for a history dynamics model.<br />
: Dynamica 10: 103-106 [http://www.systemdynamics.org/dynamica/articles/102/5.pdf]<br />
:Originalmente editada por el Bradford System Dynamics group fue posteriormente asumida por la System Dynamics Society y convertida en la actual The International Journal of System Dynamics, manteniendo los fondos bibliograficos asociados a Dynamica.<br />
: [http://www.systemdynamics.org/conferences/1983/proceed/parallel-vol2/torre913.pdf la publicación en la conferencia de System Dynamics que dió lugar al artículo]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Revistas&diff=17738
Revistas
2015-04-25T13:19:43Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>[[media:Revistas-GIC-1984-2009.bib.zip|bib de revistas hasta 2009]]<br />
==submitidos sin decision==<br />
<br />
<br />
<br />
; Ion Marques, Manuel Graña, and Miguel Velez-Reyes<br />
:Towards human skin detection via hyperspectral image unmixing<br />
: GRSL<br />
: JCR (2013) 1.809 (Q2 EEE, Q2 GEOCHEMISTRY & GEOPHYSICS, Q2 ISPT, Q2 remote sensing)<br />
<br />
; Dacosta-Aguayo R, Graña M, Falcón C, Fernández-Andújar M, López-Cancio E, Cáceres C, Bargalló N, Barrios M, Clemente IC, Torán Pera, Forés Rosa, Dávalos A, Tibor A and Mataró M<br />
:Multimodal imaging of the healthy contralesional hemisphere provides insight into neural, functional and cognitive recovery in ischemic stroke patients<br />
:<br />
<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br />
:Further Results Learning Hose Transport Control with Q-learning<br />
: Journal of Physical Agents (aceptado con revisiones)<br />
<br />
<br />
; Borja Ayerdi, Manuel Grana<br />
: Adaptive Hybrid Extreme Rotation Forest<br />
: Neural Processing Letters<br />
: JCR 2013 1.237 (Q2 CSAI)<br />
<br />
<br />
; Borja Ayerdi, Bartosz Krawczyk, Manuel Graña, Michal Wozniak<br />
: Combining One-Class Classifiers for Hyperspectral Image Segmentation<br />
: Fundamenta Informaticae<br />
<br />
==aceptados ==<br />
<br />
;Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzherimer Research, (accepted)<br />
: JCR (2013) 3.796 (Q1 Clin Neurol, Q2 Neurosciences)<br />
<br />
<br />
;Borja Fernandez-Gauna; Ismael Etxeberria-Agiriano; Manuel Graña<br />
:Learning Multirobot Hose Transportation and Deployment by Distributed Round-Robin Q-Learning<br />
: PlosOne (aceptado 18 de marzo)<br />
: JCR (2012) 3.730, (Q1 mult. sciences) (2013) 3.534 (Q1 mult. sci.)<br />
<br />
<br />
;Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
:Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (8 abril)<br />
: DOI 10.1016/j.neunet.2015.04.002<br />
: JCR (2013) 2.076 (Q1 CSAI, Q3 Neurosciences)<br />
<br />
;Maite Termenon, Manuel Graña, Alexandre Savio, Anton Akusok, Yoan Miche, Amaury Lendasse<br />
:Brain MRI Morphological Patterns Extraction Tool based on Extreme Learning Machine and Majority Vote Classification<br />
:Neurocomputing (aceptado 6 de marzo)<br />
<br />
; Borja Ayerdi, Manuel Graña<br />
: Hyperspectral Image Nonlinear Unmixing and Reconstruction by ELM Regression Ensemble<br />
: Neurocomputing<br />
<br />
;I. Macía, M. de Blas, J.H. Legarreta, L. Kabongo, O. Hernández, J.M. Egaña, J.I. Emparanza, A. García-Familiar, M. Graña<br />
:Standard and Fenestrated Endograft Sizing in EVAR Planning: Description and Validation of a Semi-automated 3D Software<br />
: Computerized Medical Imaging and Graphics [http://www.journals.elsevier.com/computerized-medical-imaging-and-graphics/] (accept 16 enero 2015)<br />
: JC· 2013 1.496 (Q3 RNMMI)<br />
<br />
<br />
<br />
;J. David Nuñez-Gonzalez, Manuel Graña, Bruno Apolloni, <br />
:Reputation Features for Trust Prediction in Social Networks, <br />
:Neurocomputing (aceptado)<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Ion Marques, Manuel Graña, Anna Kamińska-Chuchmała, Bruno Apolloni, <br />
:An experiment of subconscious intelligent social computing on household appliances, <br />
:Neurcomputing (aceptado agosto 2014)<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Fernández-Andújar M, Doornink F, Dacosta-Aguayo R, Soriano-Raya JJ, Miralbell J, Bargalló N, López-Cancio E, Pérez de la Ossa N, Gomis M, Millán M, ;Barrios M, Cáceres C, Clemente I, Dávalos A, Mataró M <br />
: Remote thalamic microstructural abnormalities related to cognitive function in ischemic stroke patients <br />
: Neuropsychology (aceptado 4 de abril 2014)<br />
: JCR (2012): 3.477 (Q1)<br />
<br />
<br />
;Maria Mataró, Juan José Soriano-Raya, Jorge López-Olóriz, Júlia Miralbell, Rosalia Dacosta-Aguayo<br />
:CEREBROVASCULAR MARKERS IN LOWERED COGNITIVE FUNCTION<br />
:Journal of Alzheimer Disease, (accepted)<br />
:JCR (2013) 3.612 (Q1 clinical neu.)<br />
<br />
== online first==<br />
<br />
; Alexandre Savio, Manuel Graña<br />
:Local Activity Features for Computer Aided Diagnosis of Schizophrenia on resting-state fMRI<br />
:Neurocomputing (aceptado 10 enero 2015) [http://authors.elsevier.com/sd/article/S0925231215002970]<br />
: DOI 10.1016/j.neucom.2015.01.079<br />
<br />
<br />
;Lopez-Guede, Jose M.; Fernandez-Gauna, Borja; Graña, Manuel; Zulueta, Ekaitz; <br />
:Training Multi-agent systems by Q-learning: approaches and empirical results<br />
: Computational Intelligence [http://onlinelibrary.wiley.com/doi/10.1111/coin.12035/abstract]<br />
: DOI: 10.1111/coin.12035<br />
: JCR (2012) 1.000 (Q3 CSAI) (2013) 0.870<br />
<br />
;PAWEL KSIENIEWICZ, DARIUSZ JANKOWSKI, BORJA AYERDI, KONRAD JACKOWSKI, MICHAL WOZNIAK, MANUEL GRANA<br />
:A Novel Hyperspectral Segmentation Algorithm - Concept and Evaluation<br />
: Logic journal IGPL (aceptado noviembre 2014) [http://jigpal.oxfordjournals.org/content/early/2014/12/29/jigpal.jzu045.short]<br />
: JCR 2013 0.530 (Q2 Logic, Q3 Mathematics, Q4 MA)<br />
<br />
<br />
;Borja Fernandez-Gauna; Jose Manuel Lopez-Guede; Ismael Etxeberria-Agiriano; Igor Ansoategi; Manuel Graña<br />
:Reinforcement Learning endowed with safe veto policies to learn the control of L-MCRS<br />
:Information Sciences [http://www.sciencedirect.com/science/article/pii/S002002551500273X]<br />
: DOI 10.1016/j.ins.2015.04.005<br />
<br />
==2015==<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International Journal of Neural Systems 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] [http://www.worldscientific.com/doi/abs/10.1142/S0129065715500070?src=recsys&journalCode=ijns&]<br />
: JCR 2014 6.056 (Q1 CSAI)<br />
<br />
;A. Suberbiola, E. Zulueta, J.M. Lopez-Guede, I. Etxeberria-Agiriano, and M. Grana<br />
: Arm Orthosis/Prosthesis Movement Control Based on Surface EMG Signal<br />
: International Journal of Neural Systems 25(3):1550009 [http://www.worldscientific.com/doi/10.1142/S0129065715500094] (2015)<br />
: JCR 2014 6.056 (Q1 CSAI)<br />
<br />
; MANUEL GRAÑA, J. DAVID NUÑEZ-GONZALEZ, LEIRE OZAETA, ANNA KAMIŃSKA-CHUCHMAŁA<br />
:Experiments of Trust Prediction in Social Networks by Artificial Neural Networks [http://www.tandfonline.com/doi/full/10.1080/01969722.2015.1007725#.VRJqFkvXmlI]<br />
: Cybernetics and Systems Volume 46, Issue 1-2, 2015 pages 19-34<br />
: DOI:10.1080/01969722.2015.1007725<br />
<br />
; EIDER SANCHEZ, CARLOS TORO, MANUEL GRAÑA, CESAR SANIN, EDWARD SZCZERBICKI<br />
:Extended Reflexive Ontologies for the generation of clinical recommendations [http://www.tandfonline.com/doi/full/10.1080/01969722.2015.1007723#abstract]<br />
: Cyberntetics and Systems Volume 46, Issue 1-2, 2015 pages 4-18<br />
<br />
<br />
<br />
;Julián Estévez, Jose Manuel Lopez-Guede, Manuel Graña<br />
: Quasi-stationary State Transportation of a Hose with Quadrotors<br />
: Robotics and Automous Systems (aceptado 5 sept) Volume 63, Part 2, January 2015, Pages 187–194 [http://www.sciencedirect.com/science/article/pii/S0921889014001791]<br />
: JCR (2013) 1.105, (Q3 Robotics, Q3 CSAI, Q3 ACS)<br />
<br />
<br />
;M Graña, B Raducanu<br />
:Bioinspired and knowledge based techniques and applications<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 1–3<br />
:DOI 10.1016/j.neucom.2014.09.039<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Darya Chyzhyk, Manuel Graña<br />
:Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160<br />
: DOI 10.1016/j.neucom.2014.09.075<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña<br />
:An active learning approach for Stroke lesion segmentation on multimodal MRI data<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 26–36 [http://www.sciencedirect.com/science/article/pii/S0925231214012466]<br />
:DOI:10.1016/j.neucom.2014.01.077<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Borja Ayerdi, Ion Marqués, Manuel Graña<br />
:Spatially regularized semisupervised Ensembles of Extreme Learning Machines for hyperspectral image segmentation<br />
: Neurocomputing (aceptado 18 de enero 2014) Volume 149, Part A, 3 February 2015, Pages 373–386 [http://www.sciencedirect.com/science/article/pii/S0925231214011424] <br />
: JCR 2013 2.005 (Q1 CSAI)<br />
: DOI 10.1016/j.neucom.2014.01.068<br />
<br />
<br />
; Jose Manuel Lopez-Guede, Borja Fernandez-Gauna,Jose Antonio Ramos-Hernanz<br />
:Single robot dynamics approximation by ELM for Reinforcement Learning for hose control<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 116–123<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;G.A. Papakostas, A. Savio, M. Graña, V.G. Kaburlasos<br />
:A Lattice Computing Approach to Alzheimer’s Disease Computer Assisted Diagnosis Based on MRI Data [http://www.sciencedirect.com/science/article/pii/S0925231214012454]<br />
: Neurocomputing Volume 150, Part A, 20 February 2015, Pages 37–42<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
;Dacosta-Aguayo, Rosalia; Graña, Manuel; Iturria-Medina, Yasser; Fernández-Andújar, Marina; López-Cancio, Elena; Caceres, Cynthia; Bargallo, Nuria; Barrios, Maite; Clemente, Imma; Pera, Guillem; Fores, Rosa; Davalos, Antoni; Mataro, Maria<br />
:Impairment of Functional Integration of the Default Mode Network correlates with Cognitive Outcome at three months after Stroke<br />
: Human Brain Mapping Volume 36, Issue 2, February 2015, Pages: 577–590<br />
: DOI: 10.1002/hbm.22648<br />
: Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine & Medical Imaging); 23/252 (Neurosciences) (2013) 6.924 (Q1 Neuroimaging, Q1 RNMMI, Q1 Neurosciences)<br />
<br />
== 2014 ==<br />
<br />
;Eider Sanchez, Peng Wang, Carlos Toro, Cesar Sanin, Manuel Graña, Edward Szczerbicki, Eduardo Carrasco, Frank Guijarro and Luis Brualla<br />
:Decisional DNA for modeling and reuse of experiential-based clinical assessments in breast cancer diagnosis and treatment<br />
: Neurocomputing Volume 146, 25 December 2014, Pages 308–318 [http://www.sciencedirect.com/science/article/pii/S0925231214007826]<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Jose Manuel Lopez-Guede, Manuel Graña, Jesus Maria Larrañaga, Fernando Oterino<br />
: Educational innovation project in the field of Industrial Informatics <br />
: Procedia - Social and Behavioral Sciences, Volume 141, 25 August 2014, Pages 20–24<br />
: DOI 10.1016/j.sbspro.2014.05.006<br />
<br />
; Jose Manuel Lopez-Guede, Manuel Graña, Jesus Maria Larrañaga, Fernando Oterino<br />
: Retrospective Vision of a Long Term Innovative Experience<br />
: Procedia - Social and Behavioral Sciences, Volume 141, 25 August 2014, Pages 15–19<br />
: DOI 10.1016/j.sbspro.2014.05.005<br />
<br />
;Rosalia Dacosta-Aguayo; Manuel Graña; Alexandre Savio; Marina Fernández-Andújar ; Tibor Auer ; Monica Millán ; Elena López-Cancio ; Cynthia Cáceres ; Nuria Bargalló ; Cesar Garrido ; Maite Barrios ; Inmaculada Clemente ; Monica Hernández ; Jose Munuera ; Antonio Dávalos ; Maria Mataró <br />
:Prognostic value of changes in resting-state functional connectivity patterns in cognitive recovery after stroke: a 3T fMRI pilot study<br />
: Human Brain Mapping (aceptado 15 nov 2013) Volume 35, Issue 8, pages 3819–3831, August 2014 [http://onlinelibrary.wiley.com/doi/10.1002/hbm.22439/abstract]<br />
: Impact Factor: 6.878, ISI Journal Citation Reports © Ranking: 2012: 1/14 (Neuroimaging); 1/120 (Radiology Nuclear Medicine & Medical Imaging); 23/252 (Neurosciences) (2013) 6.924 (Q1 Neuroimaging, Q1 RNMMI, Q1 Neurosciences)<br />
<br />
;Borja Fernández-Gauna; Igor Ansoategui; Ismael Etxeberria-Agiriano; Manuel Graña<br />
:Reinforcement Learning of ball screw feed drive controllers<br />
:Engineering Applications of Artificial Intelligence Volume 30, April 2014, Pages 107–117 [http://www.sciencedirect.com/science/article/pii/S0952197614000220]<br />
: JCR (2011) 1.665 (Q1 ENG) (2012) 1.625 (Q1 ENG, Q2 ACS, Q2 CSAI, Q2 EEE) (2013) 1.962 (Q1 ENG, Q2 ACS, Q2 CSAI, Q2 EEE)<br />
<br />
;Borja Ayerdi and Manuel Graña<br />
:Hybrid Extreme Rotation Forest <br />
: Neural Networks Volume 52, April 2014, Pages 33–42 [http://www.sciencedirect.com/science/article/pii/S0893608014000045]<br />
: JCR (2012) 1.927 (Q1 CSAI, Q3 NS) (2013) 2.076 (Q1 CSAI, Q3 NS)<br />
<br />
;Tuia, D. ; Merenyi, E. ; Jia, X. ; Grana-Romay, M.<br />
:Foreword to the Special Issue on Machine Learning for Remote Sensing Data Processing [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6804709]<br />
: Selected Topics in Applied Earth Observations and Remote Sensing, IEEE Journal of (Volume:7 , Issue: 4 ) pp. 1007 - 1011<br />
: JCR (2012) 2.874 (Q2 GP, Q1 ISPT, Q1 RS) (2013) 2.827 (Q2 GP, Q1 ISPT, Q1 RS, Q1 EEE)<br />
<br />
; Abdelmalik Moujahid, Alicia d'ANjou, Manuel Graña<br />
:Energy demands of diverse spiking cells from the neocortex, hippocampus and thalamus<br />
: Frontiers in Computational Neuroscience (2014) 8:41 [http://journal.frontiersin.org/Journal/10.3389/fncom.2014.00041/abstract]<br />
: DOI: 10.3389/fncom.2014.00041<br />
: JCR (2013) 2.233 (Q1 MCB, Q2 neurosciences)<br />
<br />
;Iker Mesa, Eider Sanchez, Carlos Toro, Javier Diaz, Arkaitz Artetxe, Manuel Graña, Frank Guijarro, Cesar Martinez, Jose Manuel Jimenez, Shabs Rajasekharan, Jose Antonio Alarcon, Alessandro De Mauro.<br />
:Design and Development of a Mobile Cardiac Rehabilitation System<br />
:Cybernetics and Systems: An International Journal, Volume 45 Issue 2 (2014), pp 92-108 [http://www.tandfonline.com/doi/full/10.1080/01969722.2014.874804#.UyF23OCEl48]<br />
:JCR (2012): 0.973 (Q3 CSC)<br />
<br />
;Israel Rebollo-Ruiz and Manuel Graña<br />
:An empirical evaluation of Gravitational Swarm Intelligence for Graph Coloring algorithm<br />
: Neurocomputing Volume 132, 20 May 2014, Pages 79–84 [http://www.sciencedirect.com/science/article/pii/S0925231213011041]<br />
: JCR (2011) 1.580 (Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Rosalia Dacosta-Aguayo; Manuel Graña; Marina Fernandez-Andujar; Elena López-Cancio; Cynthia Cáceres; Nuria Bargallo; Maite Barrios; Imma Clemente; Antoni Dávalos; Auer Tibor; Maria Mataró<br />
:Structural integrity of the contralesional hemisphere predicts cognitive impairment in ischemic stroke at three months<br />
: PLosONe January 2014 | Volume 9 | Issue 1 | e86119 [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0086119]<br />
: JCR (2012) 3.730, (Q1 mult. sciences) (2013) 3.534 (Q1 mult. sci.)<br />
<br />
; Ramon Moreno, Francesco Corona, Amaury Lendasse, Manuel Grana and Lenio Galvao<br />
: Extreme Learning Machines for Soybean classification in remote sensing Hyperspectral Images<br />
: Neurocomputing Volume 128, 27 March 2014, Pages 207–216 [http://dx.doi.org/10.1016/j.neucom.2013.03.057]<br />
: JCR (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Josu Maiora; Borja Ayerdi; Manuel Graña<br />
: Random forest active learning for AAA thrombus segmentation in computed tomography angiography images<br />
: Neurocomputing Volume 126, 27 February 2014, Pages 71–77 [http://www.sciencedirect.com/science/article/pii/S0925231213006978]<br />
: (2011) JCR 1.580 (Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
;Michal Wozniak,, Manuel Graña, Emilio Corchado, <br />
: A Survey of Multiple Classifier System as Hybrid Systems <br />
: Information Fusion Volume 16, March 2014, Pages 3–17 [http://www.sciencedirect.com/science/article/pii/S156625351300047X]<br />
: JCR (2011) 1.467 (Q2 CSAI, Q1 CSTM) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
; Michal Wozniak, Emilio Corchado, Manuel Graña<br />
:Guest Editorial: Hybrid Intelligent Fusion Systems<br />
: Information Fusion Volume 16, March 2014, Pages 2<br />
: (2011) JCR 1.467 (Q1 CSTM, Q2 CSAI) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
;Carmen Hernández , Leónia Nunes , Domingos Lopes , Manuel Graña <br />
:Data Fusion for high spatial resolution LAI estimation <br />
:Information Fusion Volume 16, March 2014, Pages 59–67 [http://www.sciencedirect.com/science/article/pii/S1566253512000395]<br />
: JCR (2010) 1.621 (2011) 1.467 (Q1 CSTM, Q2 CSAI) (2012) 2.262 (Q1 CSAI, Q1 CSTM) (2013) 3.472<br />
<br />
;B Ayerdi, J Maiora, A d'Anjou, M Graña<br />
:Applications of Hybrid Extreme Rotation Forests for image segmentation<br />
:International Journal of Hybrid Intelligent Systems 11 (1), 13-24<br />
<br />
;Noelia Oses, Fadi Dornaika, and Abdelmalik Moujahid<br />
:Image-based delineation and classification of built heritage masonry [http://www.mdpi.com/2072-4292/6/3/1863]`<br />
:Remote Sens. 2014, 6(3), 1863-1889; doi:10.3390/rs6031863<br />
<br />
==2013==<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna and Manuel Grana<br />
:"State-action value modeled by ELM in Reinforcement Learning for Hose Control Problems" , <br />
: International Journal of Uncertainty Fuzziness and Knowledge-Based Systems 21, supp02, 99-116 [http://www.worldscientific.com/doi/abs/10.1142/S0218488513400199]<br />
: JCR (2011) 1.781 (Q2 CSAI) (2012) 0.886 (Q3 CSAI)<br />
<br />
;Miguel A. Veganzonesa, Mihai Datcu, Manuel Graña,<br />
: Further results on dissimilarity spaces for hyperspectral images RF-CBIR<br />
: Pattern Recognition Letters Volume 34, Issue 14, 15 October 2013, Pages 1659-1668 [http://www.sciencedirect.com/science/article/pii/S0167865513002237]<br />
: JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
;Israel Rebollo-Ruiz and Manuel Graña Romay <br />
:Swarm Graph Coloring for the identification of user groups on ERP logs <br />
: Cybernetics and systems Volume 44, Issue 6-7: 489–504, (2013) [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.803891#.UhuA7Ra5fyI]<br />
: JCR 2012 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI) : JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
;Eider Sanchez, Carlos Toro, Arkaitz Artetxe, Manuel Graña, Cesar Sanin, Edward Szczerbicki, Eduardo Carrasco and Frank Guijarro<br />
:Bridging challenges of Clinical Decision Support Systems with a semantic approach . A case study on breast cancer.<br />
: Pattern Recognition Letters 34 (2013), pp. 1758-1768 [http://authors.elsevier.com/sd/article/S016786551300144X] <br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI) : JCR (2012) 1.266 (CSAI Q2) (2013) 1.062 (Q3 CSAI)<br />
<br />
<br />
;Edward Szczerbicki, Manuel Graña, Jorge Posada & Carlos Toro <br />
: CURRENT RESEARCH ADVANCES AND IMPLEMENTATIONS IN SMART KNOWLEDGE-BASED SYSTEMS: PART I<br />
: Cybernetics and Systems 44(2-3):95-97 [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762247]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Edward Szczerbicki, Manuel Graña, Jorge Posada & Carlos Toro <br />
: CURRENT RESEARCH ADVANCES AND IMPLEMENTATIONS IN SMART KNOWLEDGE-BASED SYSTEMS: PART II<br />
: Cybernetics and Systems 44(2-3):184-186[http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762254]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Iñigo Barandiaran, Manuel Graña, Marcos Nieto<br />
:An Empirical Evaluation of Interest Point Detectors<br />
:Cybernetics and Systems 44(2-3):98-117 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2013.762232]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
<br />
;Arkaitz Artetxe, Eider Sanchez, Carlos Toro, Cesar Sanin, Edward Szczerbick, Manuel Graña, Jorge Posada<br />
: Impact of Reflexive Ontologies in Semantic Clinical Decision Support Systems [http://www.tandfonline.com/doi/full/10.1080/01969722.2013.762256]<br />
:Cybernetics and Systems 44(2-3):187-203 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2013.762232]<br />
: JCR 2011 1.182 (Q2 CSC) (2012) 0.973 (Q3 CSC) 2013 0.507 (Q4 CSC)<br />
<br />
;Borja Fernandez-Gauna; Ion Marques; Manuel Graña<br />
:Undesired State-Action Prediction in Multi-Agent Reinforcement Learning. Application to Multicomponent Robotic System control<br />
: Information Sciences (2013) 232:309–324 [http://www.sciencedirect.com/science/article/pii/S0020025513000133]<br />
: (2011) JCR 2.833 (Q1 CSIS) (2012) 3.643 (Q1 CSIS) (2013) 3.893<br />
<br />
;Maite Termenon, Manuel Grana, Barros-Loscertales Alfonso and Cesar Avila<br />
:"Extreme Learning Machines for feature selection and classification of cocaine dependent patients on structural MRI data " , <br />
: Neural Processing Letters December 2013, Volume 38, Issue 3, pp 375-387 [http://link.springer.com/article/10.1007/s11063-013-9277-x]<br />
: JCR (2012) 1.240 (Q2 CSAI) 2013 1.237 (Q2 CSAI)<br />
<br />
<br />
;M. Termenon, M. Graña, A. Besga, J. Echeveste, A. Gonzalez-Pinto <br />
:Lattice Independent Component Analysis feature selection on Diffusion Weighted Imaging for Alzheimer’s Disease Classification <br />
: Neurocomputing (2013) Volume 114, 19 August 2013, Pages 132–141 [http://dx.doi.org/10.1016/j.neucom.2012.08.044]<br />
: JCR (2011) 1.580: (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) <br />
<br />
;Eloy Irigoyen, , Gorka Miñano<br />
:A NARX neural network model for enhancing cardiovascular rehabilitation therapies<br />
: Neurocomputing (2013) 109(3):9–15<br />
: JCR (2010) 1.442 (2011) 1.580 (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
<br />
;Ion Marques, Manuel Graña<br />
: Fusion of lattice independent and linear features improving face identification<br />
: Neurocomputing Volume 114, 19 August 2013, Pages 80–85<br />
: JCR (2011) 1.580 : (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; M. Graña, A.I Gonzalez-Acuña<br />
: Learning Parsimonious Dendritic Classifiers<br />
: Neurocomputing (2013) 109(3):3–8 [http://dx.doi.org/10.1016/j.neucom.2012.03.025] [http://www.sciencedirect.com/science/article/pii/S0925231212006765]<br />
: JCR (2010) 1.442 (2011) 1.580 (Q2 CSAI) (2012) 1.634 (T1, Q2 CSAI) 2013 2.005 (Q1 CSAI)<br />
<br />
; Alexandre Savio, Manuel Graña<br />
: Deformation Based Feature Selection for Computer Aided Diagnosis of Alzheimer's Disease<br />
: Expert Systems With Applications 40 (2013), pp. 1619-1628 [http://dx.doi.org/10.1016/j.eswa.2012.09.009]<br />
: JCR (2011) 2.203 (Q1 in CSAI) (2012) (Q2 CSAI, Q1 EEE, Q1 ORMS) (2013) 1.965 (Q1 CSAI, Q2 EEE, Q1 ORMS)<br />
<br />
; F. Dornaika, A. Moujahid, and B. Raducanu<br />
: Facial expression recognition using tracked facial actions: Classifier performance analysis<br />
: Engineering Applications of Artificial Intelligence 26(1), pp.467-477 (2013).<br />
: 5-Year Impact Factor: 1.844<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Manuel Graña<br />
:Transfer Learning with Partially Constrained Models: application to reinforcement learning of linked multicomponent robot system control<br />
: Robotics and Autonomous Systems 61 (7) (2013):694–703 [http://dx.doi.org/10.1016/j.robot.2012.07.020]<br />
: JCR (2011) 1.056 (Q2 ACS, Q3 CSAI, Q3 Rob.) (2012) 1.156 (Q3 ACS, Q3 CSAI, Q2 Robotics) (2013) 1.105 (Q3 ACS, Q3 CSAI, Q3 Robotics)<br />
<br />
; Manuel Graña, Adrian Agreda<br />
:Trust models and applications in communication and multi-agent systems<br />
: International Journal of Knowledge-based and Intelligent Engineering Systems 17 (2013) 187–193<br />
<br />
;Diego Acosta · John Congote · Iñigo Barandiaran · Oscar Ruiz · Alejandro Hoyos · Manuel Graña<br />
:Tuning of Adaptive Weight Depth Map Generation Algorithms Exploratory Data Analysis and Design of Computer Experiments (DOCE)<br />
:Journal of Mathematical Imaging and Vision 47:3-12 [http://www.springer.com/alert/urltracking.do?id=Lcb6681Ma53e73Sa]<br />
: JCR (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767 (Q2 CSAI, Q1 CSSE, Q1 MA) (2013) 2.330 (Q1 CSAI, Q1 CSSE, Q1 MA) <br />
<br />
;Bosaghzadeh, A., Moujahid, A., & Dornaika, F. <br />
:Parameterless local discriminant embedding. <br />
:Neural Processing Letters August 2013, Volume 38, Issue 1, pp 53-67<br />
: JCR (2012) 1.240 2013 1.237 (Q2 CSAI)<br />
<br />
== 2012 ==<br />
<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernadez-Gauna, Manuel Graña, Fernando Oterino and Jesus Maria Larrañaga <br />
:Effect of the Lambda Parameter in Dynamic Matrix Controllers Performance<br />
: Journal of Computer and Information Technology Vol.2, No.2, pp. 81-88<br />
<br />
;A. Moujahid, A. D'Anjou<br />
:Metabolic efficiency with fast spiking in the squid axon<br />
: Front. Comput. Neurosci. 6:95. doi: 10.3389/fncom.2012.00095 [http://www.frontiersin.org/Computational_Neuroscience/10.3389/fncom.2012.00095/abstract]<br />
: 5-Year Impact Factor: 2.147<br />
<br />
;R. Moreno , D. M. Ramik , M. Graña , and K. Madani<br />
:Image Segmentation on the Spherical Coordinate Representation of the RGB Color Space [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?reload=true&arnumber=6407287]<br />
:IET Image Processing 6(9):1275 - 1283<br />
: jCR (2010) 0.862 (2011) 0.639 (Q3 EEE) (2012) 0.895 (Q3 EEE)<br />
<br />
; A. Moujahid, A. D'Anjou, B. Cases<br />
: Community structure in real-world networks from a non-parametrical synchronization-based dynamical approach. <br />
: Chaos, Solitons and Fractals: the interdisciplinary journal of Nonlinear Science, and Nonequilibrium and Complex Phenomena<br />
: Volume 45, Issues 9–10, September–October 2012, Pages 1171–1179 <br />
: JCR 5-Year Impact Factor: 1.41<br />
<br />
; A. Besga, M. Termenon, M. Graña, J. Echeveste, J. M. Perez, A. Gonzalez-Pinto<br />
: "Discovering Alzheimer's disease and bipolar disorder white matter effects building computer aided diagnostic systems on brain diffusion tensor imaging features" [http://www.sciencedirect.com/science/article/pii/S0304394012006799].<br />
: '''Neuroscience Letters''', Volume 520, Issue 1, 27 June 2012, Pages 71–76.<br />
: JCR (2011) 2.105 (Q3 Neurosciences) (2012) 2.026 (Q3 Neurosciences)<br />
<br />
;Manuel Graña, Miguel A. Veganzones<br />
: [http://www.sciencedirect.com/science/article/pii/S0031320312001483 "An Endmember-based distance for content based hyperspectral image retrieval."]<br />
: Pattern Recognition 49(9), pp 3472-3489. September 2012. [http://dx.doi.org/10.1016/j.patcog.2012.03.015 doi]<br />
: JCR (2010) 2.607 (2011) 2.292 (Q1 CSAI, Q1 EEE) (2012) 2.632<br />
<br />
;Ion Marques, Manuel Graña<br />
:Face recognition with Lattice Independent Component Analysis and Extreme Learning Machines<br />
: Soft Computing, 2012,Volume 16, Issue 9, pp 1525-1537 [http://dx.doi.org/10.1007/s00500-012-0826-4 DOI]<br />
: JCR (2010) 1.512 (2011) 1.880 (Q2 CSAI, Q1 CSIA) (2012) 1.124 (Q3 CSAI, Q3 CSIA)<br />
<br />
; Israel Rebollo, Manuel Graña, Blanca Cases<br />
:On the effect of spatial percolation on the convergence of Graph Coloring Boid Swarm<br />
: Int. Journal on Artificial Intelligence Tools (2012) 21(6): 1250015 [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/87/IJAIT-convergence-percolation-boids-2010-12-26-submitted.zip] [http://www.worldscientific.com/doi/abs/10.1142/S0218213012500157]<br />
: JCR (2010) 0.330 (2011) 0.217 (2012) 0.250 (Q4 CSAI, Q4 CSIA)<br />
<br />
; Jbabdi S, Sotiropoulos SN, Savio AM, Graña M, Behrens TE<br />
: Model-based analysis of multi-shell diffusion MR data for tractography: How to get over fitting problems<br />
: Magnetic Resonance in Medicine (2012) 68(6):1846-1855 [http://onlinelibrary.wiley.com/doi/10.1002/mrm.24204/abstract]<br />
: ISSN 0740-3194<br />
: JCR (2010): 3.268 (2011) 2.964 (2012) 3.267 (Q1 RNMMI)<br />
<br />
;Jose Manuel Lopez-Guede, Borja Fernandez-Gauna, Manuel Graña, Ekaitz Zulueta<br />
: Improving the control of single robot hose transport <br />
: Cybernetics and Systems: An International Journal, 2012, 43:4, 261-275<br />
: JCR (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
<br />
;Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
:Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: [http://dx.doi.org/10.1016/j.neucom.2011.02.024 DOI]<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440 (2010) 1.429<br />
<br />
; Emilio Corchado, Manuel Graña, Michal Wozniak<br />
: Neurocomputing January 2012, Volume 75, Issue 1, pp. 61-63<br />
: editorial New trends and applications on hybrid artificial intelligence systems [http://www.sciencedirect.com/science/article/pii/S0925231211004206]<br />
: JCR (2010) 1.429, : (2011) JCR 1.580 (Q2 CSAI)<br />
<br />
;Miguel A. Veganzones and Manuel Graña<br />
:[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6169956&contentType=Journals+%26+Magazines&queryText%3Dspectral+spatial+cbir "A spectral/spatial CBIR system for hyperspectral images."]<br />
: IEEE Journal of Selected Topics in Applied Earth Observation and Remote Sensing 5(2), pp 488-500. April 2012.<br />
: JCR (2010) 1.140 (2011) 1.489 (2012) 2.874 (Q2 GP, Q1 ISPT, Q1 RS)<br />
<br />
;Manuel Graña and Miguel A. Veganzones<br />
:[http://asp.eurasipjournals.com/content/2012/1/64 "Endmember induction by Lattice Associative Memories and Multi-Objective Genetic Algorithms."]<br />
: EURASIP Journal on Advances in Signal Processing 2012, nº. 1 (marzo 13, 2012): 64. [http://www.biomedcentral.com/content/qcpdf/1687-6180-2012-64.pdf pdf]<br />
:JCR (2010) 1.012 (2011) 0.811 (2012) 0.807 (Q3 EEE)<br />
<br />
;Maite Termenon, Manuel Graña<br />
:A two stage sequential ensemble applied to the classification of Alzheimer's Disease based on MRI features [http://www.springerlink.com/content/x74212k073375777/]<br />
: Neural Processing Letters (2012) 35(1): 1-12 <br />
: JCR (2010) 1.088 (2012) 1.240 (Q2 CSAI)<br />
<br />
;Ivan Macia, Manuel Graña; Celine Paloc,<br />
: Knowledge Management in Image-based Analysis of Blood Vessel Structures<br />
:Knowledge and Information Systems 30(2) (2012):457-491 [http://www.springerlink.com/content/l747p10765858h1j/]<br />
: JCR Impact factor (2009) 2.211 (2010) 2.000 (2011) 2.225<br />
<br />
<br />
;Andoni Beristain, Manuel Graña, Ana I. Gonzalez<br />
:A Pruning Algorithm for Stable Voronoi Skeletons<br />
: Journal of Mathematical Imaging and Vision (2012) 42:225–237 <br />
: JCR (2009) 1.437 (2010) 1.244 (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Z. Echegoyen, J.M. Lopez-Guede, B. Fernandez-Gauna and M. Graña<br />
: Visual Servoing of Legged Robots<br />
: Journal of Mathematical Imaging and Vision 42(2) (2012): 196-211 [http://www.springerlink.com/content/c4x1r11188l31083/ doi]<br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Peter Sussner, Estevão L.Esmi, Ivan Villaverde, Manuel Graña<br />
:The Kosko Subsethood FAM: Mathematical Background, Properties, and Some Experimental Results in Computer Vision<br />
: Journal of Mathematical Imaging and Vision (2012) 42:134–149 <br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Manuel Graña, Emilio Corchado, Michal Wozniak<br />
:Special Issue on Hybrid Artificial Intelligent Systems <br />
: Journal of Mathematical Imaging and Vision: Volume 42, Issue 2 (2012), Page 101-102 [http://www.springerlink.com/content/457024354t87u21u/ doi]<br />
: JCR (2009) 1.437 (2010) 1.244 : (2011) 1.391 (Q2 CSAI, Q1 CSSE, Q1 MA) (2012) 1.767<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011). <br />
:Experiments for the selection of sub-word units in the Basque context for semantic tasks, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 49-56<br />
: DOI 10.1007/s10772-011-9109-1<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011) <br />
:Semantic Speech Recognition in the Basque context Part I: Cross-lingual approaches, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 33-40<br />
: DOI 10.1007/s10772-011-9111-7<br />
<br />
;Barroso, N., López de Ipiña, K., Hernández C., Ezeiza A. & Graña M. (2011). <br />
:Semantic Speech Recognition in the Basque context Part II: Language Identification for under-resourced languages, <br />
:International Journal of Speech Technology, March 2012, Volume 15, Issue 1, pp 41-47<br />
: DOI 10.1007/s10772-011-9114-4<br />
<br />
;Juan José Valera García Vicente Gómez Garay, Eloy Irigoyen Gordo, Fernando Artaza Fano, Mikel Larrea Sukia<br />
:Intelligent Multi-Objective Nonlinear Model Predictive Control (iMO-NMPC): Towards the ‘on-line’ optimization of highly complex control problems<br />
:Expert Systems with Applications, Volume 39, Issue 7, 1 June 2012, Pages 6527–6540<br />
: JCR (2010) 1.924<br />
<br />
;Carlos Toro, Eider Sanchez, Eduardo Carrasco, Leonardo Mancilla-Amaya, Cesar Sanín, Edward Szczerbicki, Manuel Graña, Patricia Bonachela, Carlos Parra, Gloria Bueno, Frank Guijarro<br />
:USING SET OF EXPERIENCE KNOWLEDGE STRUCTURE TO EXTEND A RULE SET OF CLINICAL DECISION SUPPORT SYSTEM FOR ALZHEIMER'S DISEASE DIAGNOSIS [http://www.ehu.es/ccwintco/groupware/webdav.php/apps/phpbrain/465/ToroSanchez2012.pdf]<br />
:Cybernetics and Systems: An International Journal, 2012. Volume 43, Issue 2, pp 81-95 [http://www.tandfonline.com/doi/abs/10.1080/01969722.2012.654070 doi]<br />
:JCR (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
<br />
Carlos Toro, Javier Vaquero, Manuel Graña, Cesar Sanín, Edward Szczerbicki & Jorge Posada<br />
:BUILDING DOMAIN ONTOLOGIES FROM ENGINEERING STANDARDS [http://www.tandfonline.com/doi/full/10.1080/01969722.2012.654073#.VDGS9ufhpiU]<br />
;Cybernetics and Systems 2012, 43(2): 114-126<br />
:JCR (2010) 0.662 (2011) 1.182 (Q2 CSC) (2012) 0.973<br />
<br />
<br />
;Blanca Cases, Israel Rebollo, Manuel Graña <br />
:A Spatial-social-logical model explaining human behavior in emergency situations <br />
: Logic Journal of the IGPL 20(3):625-633<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
;Josune Gallego, Carmen Hernandez, Manuel Graña<br />
:A Morphological Cellular Automata based on Morphological Independence <br />
: Logic Journal of the IGPL 20(3):617-624<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
; Manuel Graña, Emilio Corchado, Michal Wozniak<br />
:Special issue: HAIS 2010<br />
: Logic Journal of the IGPL 20(3):533-534<br />
: doi: 10.1093/jigpal/jzr001 [http://jigpal.oxfordjournals.org/content/early/2011/02/24/jigpal.jzr001.full.pdf]<br />
: Indice de impacto JCR(2009) 0.320 (2010) 0.458 (2011) 0.913 (2012) 1.136 (Q1 Logic, Q1 Mathematics, Q2 MA)<br />
<br />
<br />
;G. García, J. Maiora A. Tapia, M. De Blas<br />
:Evaluation of Texture for Classification of Abdominal Aortic Aneurysm After Endovascular Repair<br />
:Journal of Digital Imaging 25(3):369-376<br />
:(ISI JCR 0.96) (2011) 1.255 (Q3 RNMMI)<br />
<br />
; Manuel Graña, Ivan Villaverde, Jose Manuel Lopez-Guede, Borja Fernandez-Gauna<br />
: Lattice Independent Component Analysis for Appearance Based Mobile Robot Localization<br />
: Neural Computing and applications, 21(5) (2012): 1031-1042<br />
: Indice de impacto JCR (2009) 0.812 (2010) 0.563 (2011) 0.699 (Q3 CSAI) (2012) (Q3 CSAI) (2012) 1.168<br />
<br />
==2011==<br />
<br />
; Josu Maiora, Manuel Graña<br />
: A computer aided diagnostic system for survival analysis after EVAR treatment<br />
: Journal of Medical Informatics & Technologies, (2011) 18:51-58<br />
<br />
;Ivan Macia; Manuel Graña; Josu Maiora; Celine Paloc; Mariano de Blas<br />
:Detection of Type II Endoleaks in Abdominal Aortic Aneurysms After Endovascular Repair<br />
:Computers in Biology and Medicine 41(10): 871-880 [http://dx.doi.org/10.1016/j.compbiomed.2011.07.005]<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112 (2011) 1.089 (Q3 B, Q3 CSIA, Q3 EB, Q4 MCB)<br />
<br />
;M. Graña, M. Termenon, A. Savio, A. Gonzalez-Pinto, J. Echeveste, J. M. Pérez, A. Besga<br />
:Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson’s correlation<br />
:Neuroscience letters,Volume 502, Issue 3, 20 September 2011, Pages 225-229 [http://dx.doi.org/10.1016/j.neulet.2011.07.049 on line]<br />
: Indice de impacto JCR (2010) 2.055 (2011) 2.105 (Q3 Neurosciences)<br />
<br />
; Manuel Graña, Borja Fernandez-Gauna, Jose Manuel Lopez-Guede<br />
:Cooperative Multi-Agent Reinforcement Learning for Multi-Component Robotic Systems: guidelines for future research<br />
: Paladyn . Journal of Behavioral Robotics. [http://www.editorialmanager.com/paladyn/mainpage.html] 2(2):71-81 [[media:Draft-2011-07-01-Paladyn.MARLReview.Grana.Borja.pdf|draft]]<br />
<br />
;A. Moujahid, A. d' Anjou, F. J. Torrealdea, and F. Torrealdea<br />
:Energy and information in Hodgkin-Huxley neurons<br />
:Phys. Rev. E 83, 031912 (2011)<br />
:Impact Factor: 2.400<br />
<br />
;A. Moujahid, A. d' Anjou, F. J. Torrealdea, and F. Torrealdea<br />
:Efficient synchronization of structurally adaptive coupled Hindmarsh-Rose neurons<br />
:Chaos, Solitons and Fractals: the interdisciplinary journal of Nonlinear Science, and Nonequilibrium and Complex Phenomena, DOI:10.1016/j.chaos.2011.07.005 (2011)<br />
:Impact Factor: 1.72<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI]<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112 (2011) 1.089 (Q3 B, Q3 CSIA, Q3 EB, Q4 MCB)<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez Guede, Ekaitz Zulueta, Zelmar Echegoyen, Manuel Graña<br />
: Basic Results and Experiments on Robotic Multi-Agent System for Hose Deployment and Transportation <br />
: International Journal of Artificial Intelligence (IJAI) 6(S11):183-202 [http://www.ceserp.com/cp-jour/index.php?journal=ijai&page=article&op=view&path%5B%5D=923]<br />
<br />
;Ramón Moreno, Manuel Graña, Alicia d’Anjou<br />
:Illumination Source Chromaticity Estimation Based on Spherical Coordinates in RGB<br />
: Electronics letters, (2011) 47(1):28–30 [http://dx.doi.org/10.1049/el.2010.2735 DOI]<br />
: An implementation can be found in [[Illumination Source Chromaticity Estimation (ISC)]] <br />
: ISI JCR (2009) 0.970<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181 (2011), pp. 1910-1928 <br />
:Impact factor JCR (2008): 3.095 (2009) 3.291 (2010) 2.836 (2011) 2.833 (Q1 CSIS) (2012) 3.643 (Q1 CSIS)<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
;Javier Vaquero, Carlos Toro, Manuel Graña<br />
: Preserving Virtual Engineering Knowledge thorough the Product Life Cycle<br />
: Cybernetics & Systems 42 (2): 124-138. <br />
: ISSN: 0196-9722 (Print), 1087-6553 (Online), Taylor and Francis publishers (2011)<br />
: ISI JCR (2009) 0.780 (2010) 0.662 (2011) 1.182 (Q2 CSC)<br />
: [[media:Draft jvaquero 2010.pdf|draft of the paper]]<br />
<br />
<br />
; Ivan Villaverde, Manuel Graña<br />
:Neuro-Evolutionary mobile robot egomotion estimation with a 3D ToF camera<br />
: Neural Computing and applications 20(3): 345-354, [http://dx.doi.org/10.1007/s00521-010-0384-6 DOI]<br />
: ISI JCR (2008) 0.767 (2009) 0.812 (2010) 0.563 (2011) 0.699 (Q3 CSAI)<br />
<br />
==2010==<br />
<br />
; Miguel Angel Veganzones, Leonia Nunes, Domingos Lopes, Carmen Hernández and Manuel Graña<br />
: Implementation of an user-friendly interface of the Forest-BGC model for regional/global-scale researches<br />
: [http://www.inrb.pt/inia/silva-lusitana SILVA LUSITANA], Año XVIII, December 2010.<br />
: Instituto Nacional de Investigaçao Agraria (Eds.); Portugal.<br />
: ISSN 0870-6352.<br />
<br />
;Borja Fernandez-Gauna, Jose Manuel Lopez-Guede, Ekaitz Zulueta, Manuel Graña <br />
:Learning hose transport control with Q-learning <br />
: Neural Network World 20(7):913-923 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511<br />
<br />
;Alexandre Savio, Juliette Charpentier, Maite Termenón, Ann K. Shinn, Manuel Graña<br />
:Neural classifiers for schizophrenia diagnostic support on diffusion imaging data<br />
: Neural Network World 20(7):935-949 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511 (2011) 0.646 (Q4 CSAI)<br />
<br />
;E. Irigoyen, M. Larrea, J. Valera, V. Gómez, F. Artaza<br />
:A Neuro‐Genetic Control Scheme application for industrial R^3 workspaces<br />
: Neural Network World 20(7):811-824 [http://www.nnw.cz/obsahy10.html]<br />
: ISI JCR 2009: 0.475 (2010) 0.511<br />
<br />
;Maiora, J., Garcia, G., Tapia, A., Macia, I., Legarreta, J.H., Paloc, C., De Blas, M. & Grana, M.<br />
:Thrombus Change Detection After Endovascular Abdominal Aortic Aneurysm Repair<br />
:International Journal of Computer Assisted Radiology and Surgery<br />
:Springer-Verlag, 2010, Vol. 5 (Suppl 1), pp. S15<br />
: IF JCR (2011) 1.481<br />
<br />
; Iñigo Barandiaran, Celine Paloc, Manuel Graña<br />
:Real-time Optical Markerless Tracking for Augmented Reality Applications<br />
:J Real-Time Image Processing 5(2):129-138 [http://www.springerlink.com/content/1861-8200], doi [http://www.springerlink.com/content/x281360862565132/]<br />
: Impact factor JCR (2010): 0.962 (2011) 1.020 (Q3 CSAI, Q3 EEE, Q2 ISPT)<br />
<br />
;Z. Echegoyen, I. Villaverde, R. Moreno, M. Graña, A. d’Anjou<br />
:Linked Multi-Component Mobile Robots: modeling, simulation and control<br />
: Robotics and Autonomous Systems 58(12) : 1292-1305<br />
:Impact Factor (2008): 1.214 (2009) 1.361 (2010) 1.313<br />
: DOI [http://dx.doi.org/10.1016/j.robot.2010.08.008]<br />
<br />
; Ramón Moreno, Manuel Graña, Ekaitz Zulueta<br />
:An RGB Color Gradient following Color Constancy Preservation<br />
: Electronics Letters 46(13): 908--910<br />
: ISI JCR (2009) 0.970 (2010) 1.001<br />
<br />
;Richard J Duro; Manuel Graña Romay; Javier de Lope Asiain,<br />
:On the Potential Contributions of Hybrid Intelligent Approaches to Multicomponent Robotic System Development [[media:14-04-09-Hais2008-Duro.pdf|draft]] <br />
: Information Sciences 180 (14):2635-2648<br />
: DOI [http://dx.doi.org/10.1016/j.ins.2010.02.005]<br />
: Impact factor JCR (2008): 3.095 (2009) 3.291 (2010) 2.833<br />
<br />
; Andoni Beristain, Manuel Graña<br />
: A pruning algorithm for Voronoi Skeletons<br />
: Electronics Letters 46(1):39-41 <br />
:ISI JCR (2008) 1.140 (2009) 0.970 (2010) 1.001<br />
<br />
;Manuel Graña, Alexandre M. Savio, Maite García-Sebastián, Elsa Fernández. <br />
:A Lattice Computing approach for On-line fMRI analysis, <br />
:Image and Vision Computing 28(7):1155-1161, July 2010, <br />
: DOI http://dx.doi.org/10.1016/j.imavis.2009.10.004<br />
:ISI JCR (2008) 1.496 (2009) 1.474 (2010) 1.525<br />
<br />
==2009==<br />
<br />
;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou, Abdelmalik Moujahid, N. Vélez de Mendizábal<br />
:Energy efficiency of information transmission by electrically coupled neurons<br />
:Biosystems, Volume 97, Issue 1, July 2009, Pages 60-71<br />
:Impact factor: 1.646<br />
<br />
;Francisco J. Torrealdea, Cecilia Sarasola, Alicia d’Anjou<br />
:Energy consumption and information transmission in model neurons<br />
:Chaos, Solitons & Fractals, Volume 40, Issue 1, 15 April 2009, Pages 60-68<br />
:Impact factor: 3.025 (2009) 3.315<br />
<br />
;Maite García-Sebastián, Ana Isabel González, Manuel Graña<br />
:An Adaptive Field Rule for Non-parametric MRI Intensity Inhomogeneity Estimation Algorithm [http://dx.doi.org/10.1016/j.neucom.2008.12.034]<br />
:Neurocomputing 72 (2009) 3556–3569<br />
:DOI: doi:10.1016/j.neucom.2008.12.034<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
:JCR (2008) 1.234<br />
<br />
;Abdelmalik Moujahid, Blanca Cases, F.J. Olasagasti<br />
:Consensus dynamics in a dolphin social network<br />
:CEUR Workshop Proceedings, vol-442,2 (ISSN 1613-0073) <br />
<br />
;Blanca Cases, F.Javier Olasagasti, Abdelmalik Moujahid, Alicia D'Anjou <br />
:Swarm Intelligence: una aplicación a la toma de decisiones colectivas<br />
:CEUR Workshop Proceedings, vol-442,6 (ISSN 1613-0073) <br />
<br />
;Andoni Beristain, Manuel Graña.<br />
:Emotion Recognition Based on the Analysis of Facial Expressions.<br />
: New Mathematics and Natural Computation (NMNC), 5(2) pp.513-534 (world scientific press [http://www.worldscinet.com/nmnc/nmnc.shtml])<br />
<br />
;Manuel Graña, Ivan Villaverde, José Orlando Maldonado, Carmen Hernandez<br />
:Two Lattice Computing approaches for the unsupervised segmentation of Hyperspectral Images<br />
: Neurocomputing, 72(2009):2111–2120<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI 10.1016/j.neucom.2008.06.026<br />
<br />
; Manuel Graña<br />
: Special issue on the Lattice Computing and Natural Computing track from JCIS 2007<br />
: Neurocomputing 72:2065–2066<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI http://dx.doi.org/10.1016/j.neucom.2008.11.021<br />
<br />
;Maite García-Sebastián, Carmen Hernandez, Alicia d'Anjou<br />
:Robustness of an Adaptive MRI Segmentation Algorithm Parametric Intensity Inhomogeneity Modeling [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V10-4V59VW3-8&_user=984461&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000049823&_version=1&_urlVersion=0&_userid=984461&md5=706b7323a65e4074fdf4015bcb1a34d3]<br />
:Neurocomputing 72 (2009) 2146-2152. [[BibTeX]]<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
: DOI 10.1016/j.neucom.2008.07.014<br />
<br />
==2008==<br />
<br />
;Pablo González-Nalda and Blanca Cases<br />
:Topos: Spiking neural networks for temporal pattern recognition in complex real sounds<br />
:Neurocomputing, (2008) 71(4-6) :721-732<br />
: JCR 2008 1.234 JCR 2009 1.440<br />
<br />
;Ivan Villaverde, Zelmar Echegoyen, Manuel Graña<br />
: Neuro-Evolutive system for ego-motion estimation with a 3D camera<br />
: Australian Journal of Intelligent Information Systems, 10(1):59-70<br />
: ISSN 1321-2133<br />
<br />
;Israel Rebollo, Manuel Graña<br />
: Aplicaciones de RFID<br />
: Novatica,195:42-46, sept. 2008, <br />
<br />
; Jose Orlando Maldonado, Manuel Graña<br />
:Recycled paper visual indexing for quality control<br />
: Expert Systems with Applications, 45(4) pp 8807–8815<br />
: ISI JCR 2007 1.177- 2008 2.596 (Q1 CSAI, Q1 EEE, Q1 ORMS)<br />
: http://dx.doi.org/10.1016/j.eswa.2008.11.023<br />
<br />
;Sanin, C., Toro, C., Vaquero, J., Szczerbicki, E. Posada, J. <br />
:Implementing Decisional DNA in Industrial Maintenance by a knowledge SOUPA Extension <br />
: Systems Science, Vol. 33 No. 2:61-68 <br />
: ISSN: 0137-1223, Wroclaw, Poland 2008.<br />
<br />
;Toro, C ,Sanin, C. / Szczerbicki, E. / Posada, J. <br />
: Reflexive Ontologies: Enhancing Ontologies with self-contained queries <br />
:Cybernetics and Systems: An International Journal, 39: 1–19 <br />
:ISSN: 0196-9722 print, 1087-6553 online, USA 2008.<br />
: ISI JCR 2006 0.964<br />
<br />
;Eloy Irigoyen, Miguel Pinzolas<br />
:Numerical bounds to assure initial local stability of NARX multilayer perceptrons and radial basis functions<br />
:Neurocomputing, 72; 539-547<br />
:ISSN: 0925-2312<br />
:ISI JCR 2008 1.745<br />
:http://dx.doi.org/10.1016/j.neucom.2007.11.018<br />
<br />
==2007==<br />
<br />
;Maite Garcia-Sebastián, Elsa Fernandez, M. Graña, Francisco J. Torrealdea<br />
:''A parametric gradient descent MRI intensity inhomogeneity correction algorithm'' (pdf [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6V15-4NT84HV-2&_user=984461&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_searchStrId=940574918&_rerunOrigin=google&_acct=C000049823&_version=1&_urlVersion=0&_userid=984461&md5=112b05574e5ac5481a15297bb531da15])<br />
:Pattern Recognition Letters 28(13):1657-1666<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005, 2006, 2007) 0.552, 1.138 0.952 0.853<br />
<br />
;Ivan Villaverde, Alicia d'Anjou, M. Graña<br />
:''Morphological Neural Networks and Vision Based Simultaneous Localization and Mapping''<br />
:Integrated Computer-Aided Engineering 14(4):355-363<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.444, JCR 2006 0.236, JCR 2007 0.113, JCR 2008 0.617<br />
<br />
;Toro, C. / Posada, J / Oyarzun, J / Falcón, J<br />
: Supporting the CAD Structural Design Process with knowledge based tools, <br />
:Journal of Cybernetics and systems, <br />
:ISBN 1087-6553 (electronic) 0196-9722 (paper), Taylor and Francis publishers, 2007.<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.681, JCR 2006 0.964, JCR 2007 0.655<br />
<br />
;Sanin, C. / Szczerbicki, E. / Toro, C. <br />
: An OWL Ontology of Set of Experience Knowledge Structure <br />
: Journal of Universal Computer Science , Volume 13, number 2, pages 209-223, 2007<br />
<br />
; EKAITZ ZULUETA GUERRERO; PEDRO MARIA IRIONDO BENGOA; JOSE MANUEL LOPEZ GUEDE; Ander Etxeberria <br />
: Entropy Analysis for Stochastic System Control<br />
: INTERNATIONAL JOURNAL OF FACTORY AUTOMATION, ROBOTICS AND SOFT COMPUTING 2(2): 88-92<br />
<br />
==2006==<br />
<br />
;F.J. Torrealdea, A. d'Anjou, Manuel Graña, C. Sarasola<br />
:''Energy aspects of the synchronization of model neurons''<br />
: Physical Review E 74:011905<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2006 2.438<br />
<br />
;Toro, C. Posada, J Wundrak, S Stork, A<br />
: Improving Virtual Reality Applications in CAD through Semantics,<br />
:The International Journal of Virtual Reality, 2006, volume 5, Number 4, pages 39-46<br />
<br />
;Posada, J. / Wundrak, S. / Toro, C. / Stork, A. <br />
: Using Ontologies and STEP standards for the semantic simplification of CAD models in different engineering domains <br />
: Journal of Applied Ontology, Volume 1, Number 3-4/2006, pp. 263-279<br />
<br />
==2005==<br />
<br />
; Gurutze Arzamendi, Alicia d'Anjou, Manuel Graña, José R. Leiza, José M. Asua<br />
: ''Model reduction in emulsion polymerization using hybrid first principles/artificial neural networks models 2a Long Chain Branching Kinetics''<br />
: Macromolecular Theory and Simulations 14:125-132<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 1.544<br />
<br />
; C. Sarasola, A. d'Anjou, F.J. Torrealdea, Manuel Graña<br />
: ''Minimization of the energy flow in the synchronization of nonindentical chaotic systems''<br />
: Physical Review E 72:026223<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 2.418<br />
<br />
;C. Sarasola, , A. d'Anjou, F. J. Torrealdea and A. Moujahid<br />
: ''Energy-like functions for some dissipative chaotic systems.'' <br />
: Int. J. Bifurcation and Chaos 15(8), 2507-2521<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.845<br />
<br />
; A. d'Anjou, C. Sarasola, , F. J. Torrealdea. <br />
: ''On the characterization of different synchronization stages by energy considerations.''<br />
: Journal of Physics: Conference Series, 23, 238–251<br />
<br />
;Blanca Cases and Manuel Alfonseca<br />
:Towards a proof of the decidability of the momentary stagnation of the growth function of D0L systems<br />
:Theoretical Computer Science, Volume 341, Issues 1-3, 5 September 2005, Pages 247-262<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.743<br />
<br />
;Posada, J. / Wundrak, S. / Toro, C. / Stork, A. <br />
: Using Ontologies and STEP standards for the semantic simplification of CAD models in different engineering domains <br />
: Journal of Applied Ontology, Volume 1, Number 3-4/2006, pp. 263-279<br />
<br />
==2004==<br />
<br />
; M. Graña, J. Gallego, C. Hernandez<br />
: ''A Single Individual Evolutionary Strategy for Endmember Search in Hyperspectral Images.''<br />
:Information Sciences, Int. J 161(3-4):181-197<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2003, 2005) 0.264, 0.447, 0.723<br />
<br />
;B. Raducanu, Manuel Graña, F.X. Albizuri, A. d'Anjou<br />
: ''A Probabilistic Hit-and-Miss Tranform for Face Localization''<br />
:Pattern Análisis and Applications 7:117-127<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 0.803<br />
<br />
;Elsa Fernandez, Manuel Graña, Jesús Ruiz-Cabello<br />
: ''On a Gradient Based Evolution Strategie For Parametric Illumination Correction''<br />
:Electronics Letters 40(9):531-532<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 0.968<br />
<br />
;Cecilia Sarasola, Francisco J. Torrealdea, Alicia d'Anjou, A. Moujahid, Manuel Graña<br />
: ''Energy balance in feedback synchronization of chaotic systems''<br />
: Physical review E 69-011606<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2004 2.352<br />
<br />
==2003==<br />
<br />
; F. Xabier Albizuri, Manuel Graña, Bogdan Raducanu <br />
:Statistical transmission delay guarantee for nonreal-time traffic multiplexed with real-time traffic<br />
:Computer Communications 26 (2003) 1365–1375<br />
: Indicadores de calidad, JCR (2005) 0.556 (2009) 0.933<br />
<br />
; M. Graña, P. Sussner, G.X. Ritter<br />
: [[media:Grana-sussner-ritter-2003-mathware.pdf|Innovative Applications of Associative Morphological Memories]]<br />
: Mathware & Soft Computing 10(3):155-168<br />
: [http://ic.ugr.es/Mathware/index.php/Mathware/issue/view/6 journal web page]<br />
<br />
;A. d'Anjou, F. J. Torrealdea, J.R. Leiza, J.M. Asua, G. Arzamendi <br />
: ''Model reduction in emulsion polymerization using Hybrid First-Principles/Artificial Neural Networks models''<br />
: Macromolecular Theory and Simulation 12:42-56<br />
: indicadores de calidad, JCR (2005) 1.544 (2006) 1.073 (2007) 1.792 (2008) 1.912 (2009) 1.683<br />
<br />
; C. Sarasola, F.J. Torrealdea, A. d'Anjou, A. Moujahid and M. Graña<br />
: ''Feedback synchronization of chaotic systems''<br />
: Int. J. Bifurcation and Chaos 13(1):177-191<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.014<br />
<br />
;B. Raducanu, M. Graña, F.X. Albizuri<br />
: ''Morphological Scale Spaces and Associative Morphological Memories: Results on Robustness and Practical Applications''<br />
: Journal of Mathematical Imaging and Vision 9(2):113-131<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2003, 2005) 0.617,2.197<br />
<br />
;C. Sarasola, F.J. Torrealdea, A. d’Anjou, A. Moujahid, M. Graña,<br />
: ''Nonzero error synchronization of chaotic systems via dynamic coupling''<br />
: Physica D 177(1-4):39-49<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2002,2003:1.144,1.014<br />
<br />
;R. Perez de Alejo, J. Ruiz-Cabello, M. Cortijo, I. Rodriguez, I. Echave, J. Regadera, J. Arrazola, P. Avilés, P. Barreiro, D. Gargallo, M. Graña<br />
: ''Computer- Assisted Enhanced Volumetric Segmentation Magnetic Resonance Imaging Data Using a Mixture of Artificial Neural Networks''<br />
: Magnetic Resonance Imaging 21:901-912<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.420<br />
<br />
; JOSE MARIA GONZALEZ DE DURANA GARCIA; TEODORO RICO PASTRANA; EKAITZ ZULUETA GUERRERO<br />
: HYBRID MODELING OF OPEN LOOP DC-DC CONVERTERS.<br />
: FACING 11(2): 41--47<br />
<br />
==2002==<br />
<br />
;C. Sarasola, F.J. Torrealdea, A. d'Anjou, M. Graña<br />
: ''Cost of synchronizing different chaotic systems''<br />
: Mathematics and Computers in Simulation 58:309-327<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2005): 0.253,0.554<br />
<br />
; Jesús Ruiz-Cabello, Javier Regadera, Carmen Santisteban, Manuel Graña, Rigoberto Pérez de Alejo, Imanol Echave, Pablo Avilés, Ignacio Rodriguez, Inmaculada Santos, Domingo Gargallo, Manuel Cortijo<br />
: ''Monitoring actute inflammatory processes in the mouse muscle by MR imaging and spectroscopy: a comparision with pathological results''<br />
: NMR in Biomedicine 15:204-214<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2002,2005) 2.160, 2.469<br />
<br />
==2001==<br />
<br />
; B. Raducanu, M. Graña, F.X. Albizuri, A. D'Anjou<br />
: ''Face localization based on the morphological multiscale fingerprints''<br />
: Pattern Recognition Letters 22:359-371<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005) 0.552, 1.138<br />
<br />
;A.I. Gonzalez, M. Graña, J. Ruiz-Cabello, A. d'Anjou<br />
: ''Experimental results of an Evolution-based Adaptation Strategy for VQ Image Filtering'' [[media:IS2001_Evolution_VQfilter.pdf|pdf]]<br />
: Information Sciences, Int. J. 133 (3-4):249-266<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2003, 2005) 0.264, 0.447, 0.723<br />
<br />
; M.C. Hernandez, F.X Albizuri, A. d'Anjou, M. Graña, F.J. Torrealdea<br />
: ''Efficient solution of MAX-SAT and SAT via higher order Boltzmann Machines''<br />
: Investigacion Operacional 22(1):67-78<br />
:Indicadores de calidad (Índice de Impacto o similares): <br />
:Editorial y Lugar de publicación: Dept. Matematica Aplicada, Fac. Matematica y Computación, Universidad de la Habana<br />
<br />
;Israel Rebollo, Manuel Graña y Carmen Hernández<br />
:APLICACION DE ALGORITMOS ESTOCASTICOS DE OPTIMIZACION AL PROBLEMA DE LA DISPOSICION DE OBJETOS NO-CONVEXOS. [[http://rev-inv-ope.univ-paris1.fr/files/22201/IO-22201-11.pdf]]<br />
: Investigacion Operacional 22(2):184-192<br />
:Indicadores de calidad (Índice de Impacto o similares): <br />
:Editorial y Lugar de publicación: Dept. Matematica Aplicada, Fac. Matematica y Computación, Universidad de la Habana<br />
<br />
; A. d'Anjou,C. Sarasola, F.J. Torrealdea, R. Orduna, M. Graña<br />
: ''Parameter adaptive identical synchronization disclosing Lorenz chaotic mask''<br />
: Physical Review E E63-046213<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 2.202, (JCR 2002 2.397)<br />
<br />
; S. O. Anchorena, B. Cases<br />
: ''Modeling Chaotic Series by Simple Eco-Grammar Systems with Reproduction, Death and Maturation of Agents.''<br />
: Grammars, vol. 6 num. 3, pp. 155-168 (2003)<br />
: EE: http://www.springerlink.com/content/n68251124147700r/<br />
<br />
==2000==<br />
<br />
;A.I. Gonzalez, M. Graña, F.X. Albizuri, A. D'Anjou, F.J. Torrealdea<br />
: A Near Real-Time Evolution-based Adaptation Strategy for Dynamic Color Quantization of Image Sequences [[media:IS2000_Evolution_CQ_image_sequence.pdf|pdf]]<br />
: Information Sciences, Int. J. 122:161-183<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2003, 2005) 0.447, 0.723<br />
<br />
;J. Ruiz Cabello, I Rodriguez, P. Avilés, M. Graña, I. Echave, J. Regadera, D. Gargallo, M. Cortijo<br />
: Magnetic resonance imaging to monitor the biology of inflammation<br />
: European Biophysics Journal 29(4-5):363<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001,2005) 1.917,1.811 <br />
:ISSN: 0175-7571<br />
<br />
;I Rodriguez, M. Graña, I. Echave, P. Barreiro, M. Cortijo, J. Ruiz Cabello<br />
: MR image processing using neural networks and vector quantization<br />
: Magnetic Resonance Materials in Physics, Biology and Medicine (MAGMA) 11 (supl. 1):143<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2003 1.836<br />
<br />
;F.X. Albizuri, A.I. Gonzalez, M. Graña, A. D'Anjou<br />
: ''Neural learning for distributions on categorical data''[[media:Albizuri2000_Neural_learning.pdf|pdf]]<br />
: Neurocomputing 34:1-9<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR (2001, 2005) 0.534, 0.790<br />
<br />
==1999==<br />
<br />
;J.A. Lozano, P. Larrañaga, M. Graña, F.X. ALbizuri<br />
: ''Genetic Algorithms: bridging the convergence gap''<br />
: Theoretical Computer Science 229:11-22<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.743<br />
<br />
;A.I. Gonzalez, M. Graña, M. Cottrell<br />
: ''Basic competitive neural networks as adaptive mechanisms for non-stationary color quantization'' [[media:Ai-gonzalez-neural-computing-appl-1999.pdf|pdf]]<br />
: Neural Computing and Applications 8: 347-367<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 0.403<br />
<br />
==1998==<br />
<br />
; A. I. Gonzalez, M. Graña<br />
: ''Una estrategia evolutiva para clustering no estacionario''<br />
: Inteligencia Artificial, Revista Iberoamericana de Inteligencia Artificial, 2(5): 68-73<br />
<br />
;A. I. Gonzalez, M. Graña, A. D'Anjou, F.X. Albizuri, F.J Torrealdea<br />
: ''A comparison of experimental results with a Evolution Strategy and Competitive Neural Networks for near real-time Color Quantization of image sequences'' [[media:AppInt1998_Evol_CNN_CQ_sequences.pdf|pdf]]<br />
: Applied Intelligence 8 (1): 43-51<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 0.9<br />
<br />
==1997==<br />
<br />
; M. Graña, A. D´Anjou, F.J. Torrealdea<br />
: User expectations for the intelligent blackboard [[media:M-grana-displays-1997.pdf|pdf]]<br />
: Displays 17 (3-4): 143-146<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor: 0.947, JCR 2007 1.179<br />
<br />
; A. I. Gonzalez, M. Graña, A. D´Anjou, F.X. Albizuri, M. Cottrell<br />
: A sensitivity analysis of the Self Organizing Map as an Adaptive One-pass Non-stationary Clustering algorithm: the case of Color Quantization of image sequences [[media:NPL1997_SOM_onepass_nonstat_clustering.pdf|pdf]]<br />
: Neural Processing Letters 6: 77-89<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 0.701<br />
<br />
; F.X. Albizuri, A. D'Anjou, M. Graña, P. Larrañaga<br />
: Structure of the high-order Boltzmann Machine from Independence Maps<br />
: IEEE trans. Neural Networks 8 (6): 1351-1358<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 2.205<br />
<br />
; M. Graña, A. D'Anjou , F.X. Albizuri, M. Hernandez, F. J. Torrealdea, A.I. Gonzalez<br />
: Experiments of fast learning with High Order Boltzmann Machines [[media:Grana-HOBM-appl-int-1997.pdf|pdf]]<br />
: Applied Intelligence 7 (4): 287-303<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 0.569<br />
<br />
==1996==<br />
<br />
; F.X. Albizuri, A. D'Anjou , M. Graña,J.A. Lozano<br />
: Convergence properties of High-Order Boltzmann Machines<br />
: Neural Networks 9(9): 1561-1567<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR Science Edition Impact Factor 1.665<br />
<br />
;M. Graña, A. D'Anjou , F.X. Albizuri, J.A. Lozano, P. Larrañaga, Y. Yurramendi, M. Hernandez, J.L. Jimenez, F. J. Torrealdea, M. Poza, A.I. Gonzalez<br />
: Experimentos de aprendizaje con Máquinas de Boltzmann de alto orden [[media:Inf-y-automatica-exp-HOBM-96.pdf|draft]]<br />
: Informática y Automática 29(4): 42-57<br />
<br />
==1995==<br />
<br />
;A. I. González , M. Graña - A. D'Anjou<br />
: An analysis of the GLVQ algorithm [[media:IEEENN95_analysis_GLVQ.pdf|pdf]]<br />
: IEEE Transactions on Neural Netwoks 6 (4): 1012-1016<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 2.205<br />
<br />
; F. X. Albizuri - A. D'Anjou - M. Graña - F. J. Torrealdea - M. C. Hernández<br />
: The high order Boltzmann machine: learned distribution and topology<br />
: IEEE Transactions. on Neural Networks 6 (3): 767-770<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 2.205<br />
<br />
; M. Graña - A. D'Anjou - A. I. González - F. X. Albizuri - M. Cottrell<br />
: Competitive stochastic neural networks for vector quantization of images [[media:Neurocomputing95_CSNN_VQ.pdf|pdf]]<br />
: Neurocomputing 7: 187-195<br />
: Indicadores de calidad (Índice de Impacto o similares): JCR 2005 Science Edition Impact Factor 0.790<br />
<br />
==1993==<br />
<br />
;Alicia D'Anjou - Manuel Graña - Fco. Javier Torrealdea - Mª Carmen Hernández<br />
: Solving satisfiability via Boltzmann machines [[media:Danjou-pami-1993.pdf|pdf]]<br />
: IEEE Transactions on pattern analysis and machine intelligence, 15:514-521<br />
:Indicadores de calidad (Índice de Impacto o similares): JCR 2005 2.923<br />
<br />
==1992==<br />
<br />
;Alicia D'Anjou - Manuel Graña - Fco. Javier Torrealdea - Mª Carmen Hernández<br />
: Máquinas de Boltzmann para la resolución del problema de la satisfacibilidad en el cálculo proposicional<br />
: Revista Española de Informática y Automática 24: 40-49<br />
<br />
==1987==<br />
<br />
;Luis M. Alonso - Manuel Graña<br />
: Formal techniques and concurrent systems<br />
: Communications ACM 30: 752-753<br />
Indicadores de calidad (Índice de Impacto o similares): ISI JCR (2008) 2.646<br />
<br />
==1986==<br />
<br />
;Manuel Graña - Fco. Javier Torrealdea<br />
: Hierarchically structured Systems [[media:Grana-torrealdaea-1986.zip|scan]] [[media:Grana-torrealdea-1986.pdf|scan compressed]]<br />
: European Journal of Operational Research 25:20-26<br />
Indicadores de calidad ISI JCR: (2008) 1.627, <br />
<br />
; Fco. Javier Torrealdea - Manuel Graña - Fernando Ferreres<br />
: A comparison between stochastic and deterministic simulation<br />
: Advances in Modelling and Simulation (AMSE press) 5:15-32<br />
:Indicadores de calidad (Índice de Impacto o similares):<br />
<br />
; T. Alvarez - J. J. Dolado - M. Graña - I. Sukia - F. J. Torrealdea<br />
: Una versión de GPSS<br />
: Revista Española de Informática y Automática 19:45-59<br />
: Indicadores de calidad (Índice de Impacto o similares):<br />
<br />
==1984==<br />
<br />
;Fco. Javier Torrealdea - Manuel Graña<br />
: Some ideas for a history dynamics model.<br />
: Dynamica 10: 103-106 [http://www.systemdynamics.org/dynamica/articles/102/5.pdf]<br />
:Originalmente editada por el Bradford System Dynamics group fue posteriormente asumida por la System Dynamics Society y convertida en la actual The International Journal of System Dynamics, manteniendo los fondos bibliograficos asociados a Dynamica.<br />
: [http://www.systemdynamics.org/conferences/1983/proceed/parallel-vol2/torre913.pdf la publicación en la conferencia de System Dynamics que dió lugar al artículo]</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17736
Usuario:Daria.chizhik
2015-04-25T13:14:39Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
<br />
; Ariadna Besga-Basterra, Darya Chyzhyk, Itxaso González-Ortega, Alexandre Savio, Borja Ayerdi, Jon Echeveste, Manuel Graña, Ana González-Pinto<br />
: White matter anatomical correlates with biomarkers discriminating between Alzheimer’s Disease and Late Onset Bipolar Disorder by eigenanatomy on fractional anisotropy imaging<br />
: Current Alzherimer Research, (accepted). JCR (2013) 3.796 (Q1 Clin Neurol, Q2 Neurosciences)<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña<br />
: Computer Aided Diagnosis of Schizophrenia on resting state fMRI data by Ensembles of ELM<br />
: Neural Networks (8 abril) DOI 10.1016/j.neunet.2015.04.002 JCR (2013) 2.076 (Q1 CSAI, Q3 Neurosciences)<br />
<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 25(3):1550007, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]] JCR 2014 6.056 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17628
Usuario:Daria.chizhik
2015-04-07T09:28:15Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, Vol. 25, Nº3, 2015. [[media: Chyzhyk-IJNS-2015.pdf|pdf]]<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17626
Usuario:Daria.chizhik
2015-04-07T09:27:56Z
<p>Chyzhyk.darya: /* Publicaciones */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, Vol. 25, Nº3, 2015.[[media: Chyzhyk-IJNS-2015.pdf|pdf]]<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Archivo:Chyzhyk-IJNS-2015.pdf&diff=17624
Archivo:Chyzhyk-IJNS-2015.pdf
2015-04-07T09:25:15Z
<p>Chyzhyk.darya: IJNS</p>
<hr />
<div>IJNS</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17622
Usuario:Daria.chizhik
2015-04-07T09:24:19Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, Vol. 25, Nº3, 2015.<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17621
Usuario:Daria.chizhik
2015-03-27T11:13:34Z
<p>Chyzhyk.darya: /* Semana de la ciencia */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 2015, in press and online.<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Experiencia en organización de actividades de I+D==<br />
<br />
* Special event for children of sensibilization on robotic research (con ASPANOGI), 14 de marzo de 2015, San-Sebstian, España<br />
* Special event for children of sensibilization on robotic research, 11 de noviembre de 2014, San-Sebstian, España<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17619
Usuario:Daria.chizhik
2015-03-26T17:29:28Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
; Chyzhyk D, Graña M, Öngür D, Shinn AK. <br />
: Discrimination of Schizophrenia Auditory Hallucinators by Machine Learning of Resting-State Functional MRI. <br />
: International journal of neural systems, 2015, in press and online.<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: ¿Cómo se puede discriminar los pacientes con esquizofrenia mediante imagenes de resonancia magnética funcional?<br />
: Poster en Brain Awareness Week, Vitoria, Spain, 20-26 de Marzo, 2014<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Semana de la ciencia==<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17445
Usuario:Daria.chizhik
2014-12-30T10:30:47Z
<p>Chyzhyk.darya: /* 2014 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
;Darya Chyzhyk, Manuel Graña<br />
:Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: Studies in Health Technology and Informatics, 2014, Volume 207, pp. 300-310<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Semana de la ciencia==<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Cosas_temporales_para_cursos&diff=17432
Cosas temporales para cursos
2014-12-09T13:45:30Z
<p>Chyzhyk.darya: </p>
<hr />
<div><br />
sobre image annotation [http://people.csail.mit.edu/brussell/research/AIM-2005-025-new.pdf]<br />
acceso a la toolbox de matlab [http://labelme.csail.mit.edu/Release3.0/browserTools/php/matlab_toolbox.php] dentro del sitio [http://labelme2.csail.mit.edu/Release3.0/index.php]<br />
<br />
<br />
*********************************<br />
<br />
[[sesion de trabajo de vision por computador sobre Trans. Image Processing Nov-Dic 2013]]<br />
******************************<br />
function r=segmentar_active_two_class(x,gt,mask,k,n_ciclos)<br />
<br />
mask=mask>0;<br />
gt=gt>0;<br />
<br />
[n m]=size(gt);<br />
<br />
im_u=zeros(size(x));<br />
<br />
for l=1:n_ciclos<br />
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%positivas<br />
figure(1)<br />
imshow(x+uint8(im_u*255))<br />
title('muestras positivas')<br />
coord=floor(ginput(k));<br />
<br />
for i=1:k<br />
muestra_positiva((l-1)*k+i,:)=squeeze(x(coord(i,2),coord(i,1),:));<br />
end<br />
<br />
distancia=zeros(n,m,l*k);<br />
<br />
for i=1:l*k<br />
d(:,:,1)=double(x(:,:,1))-double(muestra_positiva(i,1));<br />
<br />
d(:,:,2)=double(x(:,:,2))-double(muestra_positiva(i,2));<br />
d(:,:,3)=double(x(:,:,3))-double(muestra_positiva(i,3));<br />
<br />
d=d.^2;<br />
d=sum(d,3);<br />
<br />
distancia(:,:,i)=d;<br />
<br />
end<br />
<br />
distancia_clase_1=min(distancia,[],3);<br />
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%negativas<br />
figure(2)<br />
imshow(x+uint8(im_u*255))<br />
title('muestras negativas')<br />
coord=floor(ginput(k));<br />
<br />
for i=1:k<br />
muestra_negativa((l-1)*k+i,:)=squeeze(x(coord(i,2),coord(i,1),:));<br />
end<br />
<br />
distancia=zeros(n,m,l*k);<br />
<br />
for i=1:l*k<br />
d(:,:,1)=double(x(:,:,1))-double(muestra_negativa(i,1));<br />
<br />
d(:,:,2)=double(x(:,:,2))-double(muestra_negativa(i,2));<br />
d(:,:,3)=double(x(:,:,3))-double(muestra_negativa(i,3));<br />
<br />
d=d.^2;<br />
d=sum(d,3);<br />
<br />
distancia(:,:,i)=d;<br />
<br />
end<br />
<br />
distancia_clase_0=min(distancia,[],3);<br />
<br />
r=distancia_clase_1<=distancia_clase_0;<br />
r=r.*mask;<br />
<br />
u=exp(-abs(distancia_clase_1-distancia_clase_0)/10);<br />
% figure(3)<br />
% imshow(u)<br />
% figure(4)<br />
<br />
<br />
im_u(:,:,1)=u;<br />
im_u(:,:,2)=u;<br />
im_u(:,:,3)=u;<br />
% <br />
% imshow(uint8(double(x).*im_u))<br />
% <br />
% figure(5)<br />
% imshow(x+uint8(im_u*255))<br />
<br />
accuracy(l)=sum(sum(r==gt))/(n*m);<br />
sensitivity(l)=sum(sum(double(gt).*r))/sum(sum(gt));<br />
specificity(l)=sum(sum(double(1-gt).*(1-r)))/sum(sum(1-gt));<br />
<br />
end %%% ciclos<br />
<br />
figure<br />
plot(accuracy)<br />
hold<br />
plot(sensitivity,'r')<br />
plot(specificity,'g')<br />
<br />
<br />
<br />
<br />
****************<br />
function r=segmentar_knn_two_class(x,gt,mask,k)<br />
<br />
mask=mask>0;<br />
gt=gt>0;<br />
<br />
[n m]=size(gt);<br />
<br />
imshow(x)<br />
title('muestras positivas')<br />
coord=floor(ginput(k));<br />
<br />
for i=1:k<br />
muestra(i,:)=squeeze(x(coord(i,2),coord(i,1),:));<br />
end<br />
<br />
distancia=zeros(n,m,k);<br />
<br />
for i=1:k<br />
d(:,:,1)=double(x(:,:,1))-double(muestra(i,1));<br />
<br />
d(:,:,2)=double(x(:,:,2))-double(muestra(i,2));<br />
d(:,:,3)=double(x(:,:,3))-double(muestra(i,3));<br />
<br />
d=d.^2;<br />
d=sum(d,3);<br />
<br />
distancia(:,:,i)=d;<br />
<br />
end<br />
<br />
distancia_clase_1=min(distancia,[],3);<br />
<br />
imshow(x)<br />
title('muestras negativas')<br />
coord=floor(ginput(k));<br />
<br />
for i=1:k<br />
muestra(i,:)=squeeze(x(coord(i,2),coord(i,1),:));<br />
end<br />
<br />
distancia=zeros(n,m,k);<br />
<br />
for i=1:k<br />
d(:,:,1)=double(x(:,:,1))-double(muestra(i,1));<br />
<br />
d(:,:,2)=double(x(:,:,2))-double(muestra(i,2));<br />
d(:,:,3)=double(x(:,:,3))-double(muestra(i,3));<br />
<br />
d=d.^2;<br />
d=sum(d,3);<br />
<br />
distancia(:,:,i)=d;<br />
<br />
end<br />
<br />
distancia_clase_0=min(distancia,[],3);<br />
<br />
r=distancia_clase_1<=distancia_clase_0;<br />
r=r.*mask;<br />
<br />
accuracy=sum(sum(r==gt))/(n*m)<br />
sensitivity=sum(sum(double(gt).*r))/sum(sum(gt))<br />
specificity=sum(sum(double(1-gt).*(1-r)))/sum(sum(1-gt))<br />
<br />
<br />
<br />
<br />
<br />
*****************<br />
<br />
base de datos de retina [[media:DRIVE.zip| base de datos]]<br />
<br />
********************<br />
<br />
function xr=filtro_frec_gauss_pasabanda_2(x,distancia,radio)<br />
% radio 1 > radio 2<br />
h=fspecial('gauss',size(x),radio);<br />
xform = [ 1 0 0<br />
0 1 0<br />
distancia distancia 1 ];<br />
filtro=zeros(size(x));<br />
tform_translate = maketform('affine',xform);<br />
h1=imtransform(h,tform_translate, 'XData',[1 size(h,2)],'Ydata',[1 size(h,1)]);<br />
filtro=filtro+h1;<br />
<br />
xform(3,1)=-distancia;<br />
tform_translate = maketform('affine',xform);<br />
h1=imtransform(h,tform_translate, 'XData',[1 size(h,2)],'Ydata',[1 size(h,1)]);<br />
filtro=filtro+h1;<br />
<br />
xform(3,2)=-distancia;<br />
tform_translate = maketform('affine',xform);<br />
h1=imtransform(h,tform_translate, 'XData',[1 size(h,2)],'Ydata',[1 size(h,1)]);<br />
filtro=filtro+h1;<br />
<br />
xform(3,1)=distancia;<br />
tform_translate = maketform('affine',xform);<br />
h1=imtransform(h,tform_translate, 'XData',[1 size(h,2)],'Ydata',[1 size(h,1)]);<br />
filtro=filtro+h1;<br />
<br />
<br />
filtro=filtro/max(max(filtro));<br />
<br />
figure<br />
imshow(filtro)<br />
xt=fft2(x);<br />
xtc=fftshift(xt);<br />
xtcf=xtc.*filtro;<br />
figure<br />
imshow(log(abs(xtcf)),gray(10))<br />
title('transformada filtrada')<br />
xtcfd=ifftshift(xtcf);<br />
xr=ifft2(xtcfd);<br />
xr=abs(xr);<br />
figure<br />
imshow(xr/max(max(xr)))<br />
<br />
<br />
<br />
<br />
<br />
;***********************<br />
function xr=filtro_frec_gauss(x,radio)<br />
filtro=zeros(size(x));<br />
tamano=radio*9;<br />
radio_masc=int16(floor(tamano/2));<br />
<br />
h=fspecial('gauss',tamano,radio);<br />
h=h/max(max(h));<br />
[m n]=size(x);<br />
arribam=int16(m/2+radio_masc);<br />
abajom=int16(m/2-radio_masc);<br />
arriban=int16(n/2+radio_masc);<br />
abajon=int16(n/2-radio_masc);<br />
filtro(abajom:arribam,abajon:arriban)=h;<br />
figure<br />
imshow(filtro)<br />
xt=fft2(x);<br />
xtc=fftshift(xt);<br />
figure<br />
imshow(log(abs(xtc)),gray(10))<br />
title('transformada centrada')<br />
xtcf=xtc.*filtro;<br />
figure<br />
imshow(log(abs(xtcf)),gray(10))<br />
title('transformada filtrada')<br />
xtcfd=ifftshift(xtcf);<br />
xr=ifft2(xtcfd);<br />
<br />
xr=abs(xr);<br />
figure<br />
imshow(xr)<br />
<br />
<br />
<br />
;************************************<br />
function xr=filtro_frec_gauss_pasaalta(x,radio)<br />
filtro=zeros(size(x));<br />
tamano=radio*9;<br />
radio_masc=int16(floor(tamano/2));<br />
<br />
h=fspecial('gauss',tamano,radio);<br />
h=h/max(max(h));<br />
<br />
[m n]=size(x);<br />
arribam=int16(m/2+radio_masc);<br />
abajom=int16(m/2-radio_masc);<br />
arriban=int16(n/2+radio_masc);<br />
abajon=int16(n/2-radio_masc);<br />
filtro(abajom:arribam,abajon:arriban)=h;<br />
filtro=1-filtro;<br />
figure<br />
imshow(filtro)<br />
xt=fft2(x);<br />
xtc=fftshift(xt);<br />
figure<br />
imshow(log(abs(xtc)),gray(10))<br />
title('transformada centrada')<br />
xtcf=xtc.*filtro;<br />
figure<br />
imshow(log(abs(xtcf)),gray(10))<br />
title('transformada filtrada')<br />
xtcfd=ifftshift(xtcf);<br />
xr=ifft2(xtcfd);<br />
<br />
xr=abs(xr);<br />
figure<br />
imshow(xr)<br />
<br />
<br />
<br />
<br />
<br />
**************************************<br />
<br />
transparencias para el curso de vision [http://www.sc.ehu.es/ccwgrrom/transparencias/]<br />
<br />
Master: Intro a MNI [https://www.dropbox.com/s/qkxvj487iz3ycgz/IntroMRI.pdf?dl=0 Intro a MRI]<br />
<br />
: analisis de imagenes medicas, VBM, [https://www.dropbox.com/s/50l35la77rsn0p4/OASIS-2subj.zip VBM 2 sujetos de OASIS], [https://www.dropbox.com/s/xwhyplwwm8w6qjp/OASIS-40sujetos.zip VBM 40 sujetos de OASIS]<br />
algunos codigos matlab para vision por computador<br />
: analisis de imagenes medicas, fMRI, [https://www.dropbox.com/s/gp5bl43qivvz83x/fMRI_SPM.zip?m fMRI 1 sijeto audiivo]<br />
<br />
[[Imagen:Girasol.png|200px|thumb|]]<br />
**************************************<br />
<br />
% experimento de busqueda basado en corners<br />
<br />
cd('coil-100')<br />
d=dir;<br />
i=floor(rand*7201);<br />
x=imread(d(i+2).name);<br />
figure<br />
imshow(x)<br />
x=rgb2gray(x);<br />
x=x.*uint8(x>45);<br />
cornersx=corner(x,'Harris');<br />
for j=3:size(d,1);<br />
if mod(j,100)==0<br />
j<br />
end<br />
y=imread(d(j).name);<br />
y=rgb2gray(y);<br />
y=y.*uint8(y>45);<br />
cornersy=corner(y,'Harris');<br />
distancias(j-2)=distancia_euclidea_regularizada(cornersx,cornersy);<br />
end<br />
[d_ordenadas,indices]=sort(distancias);<br />
figure<br />
for j=1:10<br />
y=imread(d(indices(j)+2).name);<br />
<br />
subplot(2,5,j)<br />
imshow(y)<br />
<br />
end<br />
cd ..<br />
<br />
<br />
***************************************<br />
function distancia=distancia_corners_chebychev_2(p1,p2)<br />
<br />
for i=1:size(p1,1)<br />
for j=1:size(p2,1)<br />
d(i,j)=norm(p1(i,:)-p2(j,:));<br />
end<br />
end<br />
<br />
minimos_filas=min(d');<br />
distancia_filas=max(minimos_filas);<br />
minimos_cols=min(d);<br />
distancia_cols=max(minimos_cols);<br />
distancia=max(distancia_filas, distancia_cols);<br />
<br />
<br />
****************************************<br />
function distancia=distancia_corners_chebychev(p1,p2)<br />
<br />
for i=1:size(p1,1)<br />
for j=1:size(p2,1)<br />
d(i,j)=norm(p1(i,:)-p2(j,:));<br />
end<br />
end<br />
<br />
minimos=min(d');<br />
distancia=max(minimos);<br />
<br />
***************************************<br />
<br />
function distancia=distancia_euclidea_regularizada(p1,p2)<br />
<br />
for i=1:size(p1,1)<br />
for j=1:size(p2,1)<br />
d(i,j)=norm(p1(i,:)-p2(j,:));<br />
end<br />
end<br />
<br />
distancia=0;<br />
for i=1:size(p1,1)<br />
[minimo indicemin]=min(d(i,:));<br />
if minimo < inf<br />
d(:,indicemin)=inf;<br />
distancia=distancia+minimo;<br />
end<br />
end<br />
<br />
distancia=distancia + abs(size(p1,1)-size(p2,1))*1000;<br />
<br />
***************************************<br />
<br />
function y=normaliza_orientacion_3(x)<br />
<br />
mascarax=x>45;<br />
[r,c]=find(mascarax);<br />
[autovectores, pt]=princomp([r,c]);<br />
pt(:,1)=pt(:,1)+mean(r);<br />
pt(:,2)=pt(:,2)+mean(c);<br />
pt=floor(pt);<br />
y=zeros(size(x));<br />
<br />
for i=1:size(r,1)<br />
if pt(i,1)>0 & pt(i,1)<=size(x,1) & pt(i,2)>0 & pt(i,2)<=size(x,2)<br />
y(pt(i,1),pt(i,2))=x(r(i),c(i));<br />
end<br />
end<br />
<br />
y=imerode(imdilate(y,ones(3)),ones(3));<br />
<br />
*************************************<br />
<br />
function y=normaliza_orientacion_2(x)<br />
<br />
mascarax=x>45;<br />
[r,c]=find(mascarax);<br />
[autovectores, pt]=princomp([r,c]);<br />
pt(:,1)=pt(:,1)+mean(r);<br />
pt(:,2)=pt(:,2)+mean(c);<br />
pt=floor(pt);<br />
y=zeros(size(x));<br />
<br />
for i=1:size(r,1)<br />
if pt(i,1)>0 & pt(i,1)<=size(x,1) & pt(i,2)>0 & pt(i,2)<=size(x,2)<br />
y(pt(i,1),pt(i,2))=x(r(i),c(i));<br />
end<br />
end<br />
<br />
for i=1:size(y,1)<br />
for j=1:size(y,2)<br />
if y(i,j)==0<br />
iabajo=i-1;<br />
iarriba=i+1;<br />
jabajo=j-1;<br />
jarriba=j+1;<br />
if iabajo<1<br />
iabajo=1;<br />
end<br />
if iarriba>size(y,1)<br />
iarriba=size(y,1);<br />
end<br />
if jabajo<1<br />
jabajo=1;<br />
end<br />
if jarriba>size(y,2)<br />
jarriba=size(y,2);<br />
end<br />
<br />
vecinos=y(iabajo:iarriba,jabajo:jarriba);<br />
<br />
h=imhist(vecinos,gray(256));<br />
[maximo ind_maximo]=max(h);<br />
y(i,j)=ind_maximo-1;<br />
end<br />
<br />
end<br />
end<br />
<br />
<br />
*************************************<br />
<br />
function y=normaliza_orientacion(x)<br />
<br />
mascarax=x>45;<br />
[r,c]=find(mascarax);<br />
[autovectores, pt]=princomp([r,c]);<br />
pt(:,1)=pt(:,1)+mean(r);<br />
pt(:,2)=pt(:,2)+mean(c);<br />
pt=floor(pt);<br />
y=zeros(size(x));<br />
<br />
for i=1:size(r,1)<br />
if pt(i,1)>0 & pt(i,1)<=size(x,1) & pt(i,2)>0 & pt(i,2)<=size(x,2)<br />
y(pt(i,1),pt(i,2))=x(r(i),c(i));<br />
end<br />
end<br />
<br />
***************************************<br />
<br />
function dist=distancia_bordes_2(o1,o2)<br />
% objetos que son imagenes binarias de contornos<br />
<br />
[nfilas ncols]=size(o1);<br />
dist=0;<br />
for i=1:nfilas<br />
indices1=find(o1(i,:));<br />
indices2=find(o2(i,:));<br />
n1=size(indices1,2);<br />
n2=size(indices2,2);<br />
<br />
if n1>0 & n2 >0<br />
if n1<n2<br />
for j=1:n1<br />
dist=dist+abs(indices1(j)-indices2(j));<br />
end<br />
dist=dist+ncols*(n2-n1);<br />
else<br />
for j=1:n2<br />
dist=dist+abs(indices1(j)-indices2(j));<br />
end<br />
dist=dist+ncols*(n1-n2);<br />
end<br />
else<br />
dist=dist+ncols*abs(n2-n1);<br />
end<br />
<br />
end<br />
<br />
*************************************<br />
%%% parece hace cosas raras.... mejor no tocar<br />
<br />
function dist=distancia_bordes(o1,o2)<br />
% objetos que son imagenes binarias de contornos<br />
<br />
[nfilas ncols]=size(o1);<br />
dist=0;<br />
for i=1:nfilas<br />
ultimo_borde_o2=0;<br />
for j=1:ncols<br />
if o1(j)<br />
if ultimo_borde_o2<ncols<br />
k=ultimo_borde_o2;<br />
while not(o2(k)) & k<=ncols<br />
k=k+1;<br />
end<br />
if k==ncols<br />
dist=dist+ncols;<br />
else<br />
dist=dist+abs(j-k);<br />
end<br />
ultimo_borde_o2=k;<br />
else<br />
% los bordes sin correspondencia de o1 se penalizan<br />
dist=dist+ncols;<br />
end<br />
end<br />
end<br />
% los bordes sin correspondencia de o2 se penalizan<br />
if ultimo_borde_o2<ncols <br />
<br />
if sum(o2(i,ultimo_borde_o2+1:ncols))>0<br />
<br />
dist=dist + sum(o2(i,ultimo_borde_o2+1:ncols))*ncols;<br />
end<br />
end<br />
<br />
end<br />
<br />
************************************<br />
<br />
cd('coil-100')<br />
d=dir;<br />
i=floor(rand*7201);<br />
x=imread(d(i+2).name);<br />
x=rgb2gray(x);<br />
x=x.*uint8(x>45);<br />
ox=edge(x,'log',0,2);<br />
for j=3:size(d,1);<br />
if mod(j,100)==0<br />
j<br />
end<br />
y=imread(d(j).name);<br />
y=rgb2gray(y);<br />
y=y.*uint8(y>45);<br />
oy=edge(y,'log',0,2);<br />
dist(j-2)=distancia_bordes(ox,oy);<br />
end<br />
[d_ordenadas,indices]=sort(dist);<br />
figure<br />
for j=1:10<br />
y=imread(d(indices(j)+2).name);<br />
<br />
subplot(2,5,j)<br />
imshow(yind)<br />
colorbar<br />
end<br />
cd ..<br />
<br />
************************************<br />
<br />
<br />
function vocabulario=crea_vocabulario_color_kmeans(ncluster)<br />
% sobre un directorio de imagenes de color<br />
% tita es el umbral de inclusion del color en el vocabulario<br />
cd('coil-100')<br />
d=dir;<br />
vocabulario=[];<br />
pilacolores=[];<br />
ncolores=0;<br />
<br />
for i=3:size(d,1)<br />
if mod(i,100)==0<br />
i<br />
<br />
end<br />
y=imread(d(i).name);<br />
[yind, mapay]=rgb2ind(y,16);<br />
for k=1:16<br />
ncolores=ncolores+1;<br />
pilacolores(ncolores,:)=mapay(k,:);<br />
end<br />
<br />
end<br />
<br />
cd ..<br />
<br />
[indices vocabulario]=kmeans(pilacolores,ncluster);<br />
<br />
******************************<br />
<br />
% experimento busqueda en bd de color<br />
<br />
<br />
tita=0.1;<br />
v=crea_vocabulario_color(tita);<br />
<br />
bd=crea_bd_vocabulario(v);<br />
<br />
i=floor(rand*7201);<br />
<br />
for j=1:size(bd,1)<br />
dist(j)=norm(bd(i,:)-bd(j,:));<br />
end<br />
[d_ordenadas,indices]=sort(dist);<br />
<br />
cd('coil-100')<br />
d=dir;<br />
figure<br />
for j=1:50<br />
y=imread(d(indices(j)+2).name);<br />
<br />
subplot(10,5,j)<br />
imshow(y)<br />
<br />
end<br />
cd ..<br />
<br />
**************************<br />
<br />
function bd=crea_bd_vocabulario(v)<br />
% v es el vocabulario... histograma de color general<br />
%<br />
cd('coil-100')<br />
d=dir;<br />
ncolores=size(v,1);<br />
bd=[];<br />
for i=3:size(d,1)<br />
<br />
if mod(i,100)==0<br />
i<br />
end<br />
y=imread(d(i).name);<br />
yind=rgb2ind(y,v);<br />
h=imhist(yind,v);<br />
bd(i-2,:)=h;<br />
end<br />
cd ..<br />
<br />
************************<br />
<br />
function vocabulario=crea_vocabulario_color(tita)<br />
% sobre un directorio de imagenes de color<br />
% tita es el umbral de inclusion del color en el vocabulario<br />
cd('coil-100')<br />
d=dir;<br />
vocabulario=[];<br />
ncolores=0;<br />
for i=3:size(d,1)<br />
if mod(i,100)==0<br />
i<br />
end<br />
y=imread(d(i).name);<br />
[yind, mapay]=rgb2ind(y,16);<br />
for j=1:16<br />
incluircolor=1;<br />
for k=1:ncolores<br />
if norm(mapay(j,:)-vocabulario(k,:))<tita<br />
incluircolor=0;<br />
end<br />
end<br />
if incluircolor<br />
ncolores=ncolores+1;<br />
vocabulario(ncolores,:)=mapay(j,:);<br />
end<br />
end<br />
end<br />
cd ..<br />
<br />
<br />
************************<br />
% experimento basico de busqueda con emparejamiento greedy de mpas de color<br />
cd('coil-100')<br />
d=dir;<br />
i=floor(rand*7201);<br />
x=imread(d(i+2).name);<br />
[xind, mapax]=rgb2ind(x,16);<br />
for j=3:size(d,1);<br />
if mod(j,100)==0<br />
j<br />
end<br />
y=imread(d(j).name);<br />
[yind, mapay]=rgb2ind(y,16);<br />
<br />
dist(j-2)=distancia_colorbar_greedy(mapax,mapay);<br />
end<br />
[d_ordenadas,indices]=sort(dist);<br />
figure<br />
for j=1:10<br />
y=imread(d(indices(j)+2).name);<br />
<br />
subplot(2,5,j)<br />
imshow(y)<br />
<br />
end<br />
cd ..<br />
<br />
***************************<br />
% funcion de emparejamiento codicioso de mapas de colores<br />
<br />
function dmap=distancia_colorbar_greedy(m1,m2)<br />
<br />
ncolores=size(m1,1);<br />
libres=ones(ncolores,1);<br />
dmap=0;<br />
for i=1:ncolores<br />
%tenemos i-1 colores asignados<br />
dist=ones(ncolores,1)*inf;<br />
for j=1:ncolores<br />
if libres(j)<br />
<br />
dist(j)=norm(m1(i,:)-m2(j,:));<br />
<br />
end<br />
<br />
end<br />
[dmin jmin]=min(dist);<br />
libres(jmin)=0;<br />
dmap=dmap+dmin;<br />
end<br />
<br />
<br />
***************************<br />
<br />
% experimento basico de busqueda en la bd REMOVIENDO el color mas cercano a negro<br />
cd('coil-100')<br />
d=dir;<br />
i=floor(rand*7201);<br />
x=imread(d(i+2).name);<br />
[xind, mapa]=rgb2ind(x,16);<br />
for i=1:16<br />
grises(i)=norm(mapa(i,:));<br />
end<br />
[minimo,negro]=min(grises);<br />
for j=3:size(d,1);<br />
if mod(j,100)==0<br />
j<br />
end<br />
y=imread(d(j).name);<br />
yind=rgb2ind(y,mapa);<br />
yr=uint8(ind2rgb(yind,mapa));<br />
dist(j-2)=sum(sum(sum(abs(y(yind~=negro)-yr(yind~=negro)))));<br />
end<br />
[d_ordenadas,indices]=sort(dist);<br />
figure<br />
for j=1:10<br />
y=imread(d(indices(j)+2).name);<br />
yind=rgb2ind(y,mapa);<br />
subplot(2,5,j)<br />
imshow(yind,mapa)<br />
colorbar<br />
end<br />
figure<br />
for j=1:10<br />
y=imread(d(indices(j)+2).name);<br />
<br />
subplot(2,5,j)<br />
imshow(y)<br />
<br />
end<br />
cd ..<br />
<br />
************************<br />
<br />
% experimento basico de busqueda en la bd<br />
cd('coil-100')<br />
d=dir;<br />
i=floor(rand*7201);<br />
x=imread(d(i+2).name);<br />
[xind, mapa]=rgb2ind(x,16);<br />
for j=3:size(d,1);<br />
if mod(j,100)==0<br />
j<br />
end<br />
y=imread(d(j).name);<br />
yind=rgb2ind(y,mapa);<br />
yr=uint8(ind2rgb(yind,mapa));<br />
dist(j-2)=sum(sum(sum(abs(y-yr))));<br />
end<br />
[d_ordenadas,indices]=sort(dist);<br />
figure<br />
for j=1:10<br />
y=imread(d(indices(j)+2).name);<br />
yind=rgb2ind(y,mapa);<br />
subplot(2,5,j)<br />
imshow(yind,mapa)<br />
colorbar<br />
end<br />
cd ..<br />
*************************<br />
<br />
function disparidades=calculo_disparidad_correlacion(izq,dcha)<br />
<br />
bizq=izq<70;<br />
bdcha=dcha<70;<br />
figure(1)<br />
proy=sum(bizq');<br />
indices=find(proy>0);<br />
arriba=indices(1);<br />
indices=find(proy(arriba+1:size(izq,1))==0);<br />
abajo=indices(1)+arriba;<br />
subplot(2,1,1)<br />
imshow(izq(arriba:abajo,:))<br />
izq=izq(arriba-2:abajo,:);<br />
bizq=bizq(arriba-2:abajo,:);<br />
<br />
<br />
proy=sum(bdcha');<br />
indices=find(proy>0);<br />
arriba=indices(1);<br />
indices=find(proy(arriba+1:size(dcha,1))==0);<br />
abajo=indices(1)+arriba;<br />
subplot(2,1,2)<br />
imshow(dcha(arriba:abajo,:))<br />
dcha=dcha(arriba-2:abajo,:);<br />
bdcha=bdcha(arriba-2:abajo,:);<br />
<br />
comp_izq=bwlabel(bizq);<br />
s_izq=regionprops(comp_izq,'all');<br />
comp_dcha=bwlabel(bdcha);<br />
s_dcha=regionprops(comp_dcha,'all');<br />
<br />
nobjetos=0;<br />
for c=1:size(s_izq,1);<br />
if s_izq(c).Area>1000<br />
nobjetos=nobjetos+1;<br />
correlacion=[];<br />
x=floor(s_izq(c).BoundingBox)<br />
abajo=x(2)+x(4);<br />
if x(2)+x(4)> size(dcha,1)<br />
abajo=size(dcha,1);<br />
end<br />
<br />
c_izq=izq(x(2):abajo,x(1):x(1)+x(3));<br />
<br />
for i=1:x(1)-1<br />
size(dcha)<br />
<br />
c_dcha=dcha(x(2):abajo,x(1)-i:x(1)-i+x(3));<br />
correlacion(i)=sum(sum(abs(c_izq-c_dcha)));<br />
end<br />
figure<br />
plot(correlacion)<br />
[minimo imin]=min(correlacion);<br />
disparidades(nobjetos)=imin;<br />
figure<br />
subplot(1,2,1)<br />
imshow(c_izq)<br />
c_dcha=dcha(x(2):abajo,x(1)-imin:x(1)-imin+x(3));<br />
subplot(1,2,2)<br />
imshow(c_dcha) <br />
end<br />
end<br />
<br />
<br />
*************************<br />
<br />
function disparidad=calculo_disparidad_proyecciones(izq,dcha,umbral)<br />
<br />
%asumo que los objetos son oscuros y el fondo blanco<br />
izq=izq<umbral;<br />
dcha=dcha<umbral;<br />
proyeccion_izq=sum(izq);<br />
proyeccion_dcha=sum(dcha);<br />
<br />
figure(1)<br />
plot(proyeccion_izq)<br />
figure(2)<br />
plot(proyeccion_dcha)<br />
<br />
%primer componente<br />
<br />
for i_1=1:1000<br />
if proyeccion_izq(i_1)>0<br />
break<br />
end<br />
end<br />
for i_2=i_1:1000<br />
if proyeccion_izq(i_2)==0<br />
break<br />
end<br />
end<br />
for j_1=1:1000<br />
if proyeccion_dcha(j_1)>0<br />
break<br />
end<br />
end<br />
for j_2=j_1:1000<br />
if proyeccion_dcha(j_2)==0<br />
break<br />
end<br />
end<br />
<br />
% calcular el centro de las proyecciones de los componentes<br />
c_izq=sum((1:i_2).*proyeccion_izq(1:i_2)/sum(proyeccion_izq(1:i_2)));<br />
c_dcha=sum((1:j_2).*proyeccion_dcha(1:j_2)/sum(proyeccion_dcha(1:j_2)));<br />
<br />
disparidad(1)= c_izq-c_dcha;<br />
<br />
%anulo primer componente<br />
<br />
proyeccion_izq(1:i_2)=0;<br />
proyeccion_dcha(1:j_2)=0;<br />
<br />
% proceso segundo componente....<br />
<br />
figure(3)<br />
plot(proyeccion_izq)<br />
figure(4)<br />
plot(proyeccion_dcha)<br />
<br />
%segundo componente<br />
<br />
for i_1=1:1000<br />
if proyeccion_izq(i_1)>0<br />
break<br />
end<br />
end<br />
for i_2=i_1:1000<br />
if proyeccion_izq(i_2)==0<br />
break<br />
end<br />
end<br />
for j_1=1:1000<br />
if proyeccion_dcha(j_1)>0<br />
break<br />
end<br />
end<br />
for j_2=j_1:1000<br />
if proyeccion_dcha(j_2)==0<br />
break<br />
end<br />
end<br />
<br />
% calcular el centro de las proyecciones de los componentes<br />
c_izq=sum((1:i_2).*proyeccion_izq(1:i_2)/sum(proyeccion_izq(1:i_2)));<br />
c_dcha=sum((1:j_2).*proyeccion_dcha(1:j_2)/sum(proyeccion_dcha(1:j_2)));<br />
<br />
disparidad(2)= c_izq-c_dcha;<br />
<br />
*******************************<br />
function disparidad=calculo_disparidad_estereo_naive(izq,dcha)<br />
<br />
%imagenes en niveles de grises<br />
% umbral_izq=metodo_otsu(izq);<br />
% umbral_dcha=metodo_otsu(dcha);<br />
<br />
umbral_izq=60;<br />
umbral_dcha=60;<br />
<br />
izq=izq>umbral_izq;<br />
dcha=dcha>umbral_dcha;<br />
izq=1-izq;<br />
dcha=1-dcha;<br />
figure(1)<br />
imshow(izq)<br />
title('izquierda')<br />
figure(2)<br />
imshow(dcha)<br />
title('derecha')<br />
[comp_izq, num_comp_izq]=bwlabel(izq);<br />
[comp_dcha, num_comp_dcha]=bwlabel(dcha);<br />
for i_izq=1:num_comp_izq<br />
if sum(sum(comp_izq==i_izq))>500<br />
break<br />
end<br />
end<br />
for i_dcha=1:num_comp_dcha<br />
if sum(sum(comp_dcha==i_dcha))>500<br />
break<br />
end<br />
end<br />
figure(3)<br />
imshow(comp_izq==i_izq)<br />
title('objeto izquierda')<br />
figure(4)<br />
imshow(comp_dcha==i_dcha)<br />
title('objeto derecha')<br />
c_izq=calcula_centroide(comp_izq==i_izq);<br />
c_dcha=calcula_centroide(comp_dcha==i_dcha);<br />
disparidad=c_izq(2)-c_dcha(2);<br />
<br />
****************************<br />
function centroide=calcula_centroide(x)<br />
% x imagen binaria<br />
[n m]=size(x);<br />
p_filas=sum(x')/sum(sum(x));<br />
<br />
p_cols=sum(x)/sum(sum(x));<br />
<br />
centro_filas=sum((1:n).*p_filas);<br />
centro_cols=sum((1:m).*p_cols);<br />
<br />
centroide=[centro_filas,centro_cols];<br />
****************************<br />
function umbral=metodo_otsu(x)<br />
h=imhist(x,256);<br />
size(h)<br />
for T=2:255<br />
v1=var(h(1:T).*(1:T)');<br />
v2=var(h(T+1:256).*(T+1:256)');<br />
P1=sum(h(1:T));<br />
P2=sum(h(T+1:256));<br />
vintra(T)=P1*v1+P2*v2;<br />
end<br />
plot(vintra)<br />
vintra(1)=inf;<br />
[minvarintra umbral]=min(vintra);<br />
<br />
****************************<br />
<br />
%descomposicion en planos de bits x es la imagen original<br />
<br />
x=double(cara);<br />
plano_8=floor(x/2^7);<br />
<br />
x=rem(x,2^7);<br />
<br />
plano_7=floor(x/2^6);<br />
<br />
x=rem(x,2^6);<br />
<br />
plano_6=floor(x/2^5);<br />
<br />
x=rem(x,2^5);<br />
<br />
plano_5=floor(x/2^4);<br />
<br />
x=rem(x,2^4);<br />
plano_4=floor(x/2^3);<br />
<br />
x=rem(x,2^3);<br />
plano_3=floor(x/2^2);<br />
<br />
x=rem(x,2^2);<br />
plano_2=floor(x/2^1);<br />
<br />
x=rem(x,2^1);<br />
plano_1=x;<br />
<br />
<br />
figure(1)<br />
subplot(2,4,1)<br />
imshow(plano_8)<br />
subplot(2,4,2)<br />
imshow(plano_7)<br />
subplot(2,4,3)<br />
imshow(plano_6)<br />
subplot(2,4,4)<br />
imshow(plano_5)<br />
subplot(2,4,5)<br />
imshow(plano_4)<br />
subplot(2,4,6)<br />
imshow(plano_3)<br />
subplot(2,4,7)<br />
imshow(plano_2)<br />
subplot(2,4,8)<br />
imshow(plano_1)<br />
<br />
% reconstruccion a partir de los planos de bits<br />
<br />
reconstruccion=zeros(size(cara));<br />
<br />
reconstruccion=plano_1;<br />
reconstruccion=reconstruccion + plano_2*2^1;<br />
reconstruccion=reconstruccion + plano_3*2^2;<br />
reconstruccion=reconstruccion + plano_4*2^3;<br />
reconstruccion=reconstruccion + plano_5*2^4;<br />
reconstruccion=reconstruccion + plano_6*2^5;<br />
reconstruccion=reconstruccion + plano_7*2^6;<br />
reconstruccion=reconstruccion + plano_8*2^7;<br />
figure (2)<br />
imshow(reconstruccion, gray(256))<br />
<br />
% reconstruccion con un watermark sencillo en el primer plano de bits<br />
<br />
reconstruccion=zeros(size(cara));<br />
<br />
<br />
reconstruccion(20:80,20:80)=fspecial('disk',30)>0;<br />
<br />
reconstruccion=reconstruccion + plano_2*2^1;<br />
reconstruccion=reconstruccion + plano_3*2^2;<br />
reconstruccion=reconstruccion + plano_4*2^3;<br />
reconstruccion=reconstruccion + plano_5*2^4;<br />
reconstruccion=reconstruccion + plano_6*2^5;<br />
reconstruccion=reconstruccion + plano_7*2^6;<br />
reconstruccion=reconstruccion + plano_8*2^7;<br />
figure (3)<br />
imshow(reconstruccion, gray(256))<br />
<br />
<br />
*************************<br />
function modelo=construir_modelo(nimagen)<br />
cd orlfaces<br />
d=dir;<br />
modelo=zeros(112,92,size(d,1)-2);<br />
for i=3:size(d,1);<br />
cd (d(i).name)<br />
ds=dir;<br />
modelo(:,:,i-2)=imread(ds(nimagen+2).name);<br />
cd ..<br />
end<br />
cd ..<br />
<br />
*******************************<br />
function modelo=construir_modelo_LOO<br />
cd orlfaces<br />
d=dir;<br />
modelo=zeros(112,92,size(d,1)-2,10);<br />
for i=3:size(d,1);<br />
cd (d(i).name)<br />
ds=dir;<br />
for j=3:size(ds,1)<br />
modelo(:,:,i-2,j-2)=imread(ds(j).name);<br />
end<br />
cd ..<br />
end<br />
cd ..<br />
*******************************<br />
function [error_acumulado, matriz_confusion]=calcular_error_test(modelo,nimagen)<br />
<br />
cd orlfaces<br />
d=dir;<br />
nclases=size(d,1)-2;<br />
distancia=zeros(nclases,1);<br />
matriz_confusion=zeros(nclases);<br />
error_acumulado=0;<br />
for i=3:size(d,1);<br />
<br />
cd(d(i).name)<br />
ds=dir;<br />
for j=3:size(ds,1)<br />
if j ~= nimagen + 2<br />
y=double(imread(ds(j).name));<br />
for k=1:size(d,1)-2<br />
distancia(k)=sum(sum(abs(modelo(:,:,k)-y)));<br />
end<br />
% <br />
<br />
[dmin, clase]=min(distancia);<br />
matriz_confusion(i-2,clase)=matriz_confusion(i-2,clase)+1;<br />
error= (i-2) ~=clase;<br />
error_acumulado= error_acumulado + error;<br />
end<br />
end<br />
<br />
cd ..<br />
end<br />
cd ..<br />
<br />
**********************************<br />
function [aciertos, error_acum]=calculo_error_LOO(m)<br />
m=double(m);<br />
[filas,cols,nsujetos,nimagenes]=size(m)<br />
error_acum=0;<br />
aciertos=0;<br />
for i=1:40<br />
i<br />
for j=1:10<br />
test=squeeze(m(:,:,i,j));<br />
distancias=zeros(nsujetos,nimagenes);<br />
<br />
for k=1:nsujetos<br />
for l=1:nimagenes<br />
<br />
distancias(k,l)=norm(test-m(:,:,k,l));<br />
end<br />
end<br />
distancias(distancias==0)=inf;<br />
[mincols rowinds]=min(distancias);<br />
[minglobal colind]=min(mincols);<br />
clase=rowinds(colind);<br />
if clase==i<br />
aciertos=aciertos+1;<br />
else<br />
error_acum=error_acum+1;<br />
end<br />
end<br />
end</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Cosas_temporales_para_cursos&diff=17430
Cosas temporales para cursos
2014-12-09T13:44:08Z
<p>Chyzhyk.darya: </p>
<hr />
<div><br />
sobre image annotation [http://people.csail.mit.edu/brussell/research/AIM-2005-025-new.pdf]<br />
acceso a la toolbox de matlab [http://labelme.csail.mit.edu/Release3.0/browserTools/php/matlab_toolbox.php] dentro del sitio [http://labelme2.csail.mit.edu/Release3.0/index.php]<br />
<br />
<br />
*********************************<br />
<br />
[[sesion de trabajo de vision por computador sobre Trans. Image Processing Nov-Dic 2013]]<br />
******************************<br />
function r=segmentar_active_two_class(x,gt,mask,k,n_ciclos)<br />
<br />
mask=mask>0;<br />
gt=gt>0;<br />
<br />
[n m]=size(gt);<br />
<br />
im_u=zeros(size(x));<br />
<br />
for l=1:n_ciclos<br />
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%positivas<br />
figure(1)<br />
imshow(x+uint8(im_u*255))<br />
title('muestras positivas')<br />
coord=floor(ginput(k));<br />
<br />
for i=1:k<br />
muestra_positiva((l-1)*k+i,:)=squeeze(x(coord(i,2),coord(i,1),:));<br />
end<br />
<br />
distancia=zeros(n,m,l*k);<br />
<br />
for i=1:l*k<br />
d(:,:,1)=double(x(:,:,1))-double(muestra_positiva(i,1));<br />
<br />
d(:,:,2)=double(x(:,:,2))-double(muestra_positiva(i,2));<br />
d(:,:,3)=double(x(:,:,3))-double(muestra_positiva(i,3));<br />
<br />
d=d.^2;<br />
d=sum(d,3);<br />
<br />
distancia(:,:,i)=d;<br />
<br />
end<br />
<br />
distancia_clase_1=min(distancia,[],3);<br />
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%negativas<br />
figure(2)<br />
imshow(x+uint8(im_u*255))<br />
title('muestras negativas')<br />
coord=floor(ginput(k));<br />
<br />
for i=1:k<br />
muestra_negativa((l-1)*k+i,:)=squeeze(x(coord(i,2),coord(i,1),:));<br />
end<br />
<br />
distancia=zeros(n,m,l*k);<br />
<br />
for i=1:l*k<br />
d(:,:,1)=double(x(:,:,1))-double(muestra_negativa(i,1));<br />
<br />
d(:,:,2)=double(x(:,:,2))-double(muestra_negativa(i,2));<br />
d(:,:,3)=double(x(:,:,3))-double(muestra_negativa(i,3));<br />
<br />
d=d.^2;<br />
d=sum(d,3);<br />
<br />
distancia(:,:,i)=d;<br />
<br />
end<br />
<br />
distancia_clase_0=min(distancia,[],3);<br />
<br />
r=distancia_clase_1<=distancia_clase_0;<br />
r=r.*mask;<br />
<br />
u=exp(-abs(distancia_clase_1-distancia_clase_0)/10);<br />
% figure(3)<br />
% imshow(u)<br />
% figure(4)<br />
<br />
<br />
im_u(:,:,1)=u;<br />
im_u(:,:,2)=u;<br />
im_u(:,:,3)=u;<br />
% <br />
% imshow(uint8(double(x).*im_u))<br />
% <br />
% figure(5)<br />
% imshow(x+uint8(im_u*255))<br />
<br />
accuracy(l)=sum(sum(r==gt))/(n*m);<br />
sensitivity(l)=sum(sum(double(gt).*r))/sum(sum(gt));<br />
specificity(l)=sum(sum(double(1-gt).*(1-r)))/sum(sum(1-gt));<br />
<br />
end %%% ciclos<br />
<br />
figure<br />
plot(accuracy)<br />
hold<br />
plot(sensitivity,'r')<br />
plot(specificity,'g')<br />
<br />
<br />
<br />
<br />
****************<br />
function r=segmentar_knn_two_class(x,gt,mask,k)<br />
<br />
mask=mask>0;<br />
gt=gt>0;<br />
<br />
[n m]=size(gt);<br />
<br />
imshow(x)<br />
title('muestras positivas')<br />
coord=floor(ginput(k));<br />
<br />
for i=1:k<br />
muestra(i,:)=squeeze(x(coord(i,2),coord(i,1),:));<br />
end<br />
<br />
distancia=zeros(n,m,k);<br />
<br />
for i=1:k<br />
d(:,:,1)=double(x(:,:,1))-double(muestra(i,1));<br />
<br />
d(:,:,2)=double(x(:,:,2))-double(muestra(i,2));<br />
d(:,:,3)=double(x(:,:,3))-double(muestra(i,3));<br />
<br />
d=d.^2;<br />
d=sum(d,3);<br />
<br />
distancia(:,:,i)=d;<br />
<br />
end<br />
<br />
distancia_clase_1=min(distancia,[],3);<br />
<br />
imshow(x)<br />
title('muestras negativas')<br />
coord=floor(ginput(k));<br />
<br />
for i=1:k<br />
muestra(i,:)=squeeze(x(coord(i,2),coord(i,1),:));<br />
end<br />
<br />
distancia=zeros(n,m,k);<br />
<br />
for i=1:k<br />
d(:,:,1)=double(x(:,:,1))-double(muestra(i,1));<br />
<br />
d(:,:,2)=double(x(:,:,2))-double(muestra(i,2));<br />
d(:,:,3)=double(x(:,:,3))-double(muestra(i,3));<br />
<br />
d=d.^2;<br />
d=sum(d,3);<br />
<br />
distancia(:,:,i)=d;<br />
<br />
end<br />
<br />
distancia_clase_0=min(distancia,[],3);<br />
<br />
r=distancia_clase_1<=distancia_clase_0;<br />
r=r.*mask;<br />
<br />
accuracy=sum(sum(r==gt))/(n*m)<br />
sensitivity=sum(sum(double(gt).*r))/sum(sum(gt))<br />
specificity=sum(sum(double(1-gt).*(1-r)))/sum(sum(1-gt))<br />
<br />
<br />
<br />
<br />
<br />
*****************<br />
<br />
base de datos de retina [[media:DRIVE.zip| base de datos]]<br />
<br />
********************<br />
<br />
function xr=filtro_frec_gauss_pasabanda_2(x,distancia,radio)<br />
% radio 1 > radio 2<br />
h=fspecial('gauss',size(x),radio);<br />
xform = [ 1 0 0<br />
0 1 0<br />
distancia distancia 1 ];<br />
filtro=zeros(size(x));<br />
tform_translate = maketform('affine',xform);<br />
h1=imtransform(h,tform_translate, 'XData',[1 size(h,2)],'Ydata',[1 size(h,1)]);<br />
filtro=filtro+h1;<br />
<br />
xform(3,1)=-distancia;<br />
tform_translate = maketform('affine',xform);<br />
h1=imtransform(h,tform_translate, 'XData',[1 size(h,2)],'Ydata',[1 size(h,1)]);<br />
filtro=filtro+h1;<br />
<br />
xform(3,2)=-distancia;<br />
tform_translate = maketform('affine',xform);<br />
h1=imtransform(h,tform_translate, 'XData',[1 size(h,2)],'Ydata',[1 size(h,1)]);<br />
filtro=filtro+h1;<br />
<br />
xform(3,1)=distancia;<br />
tform_translate = maketform('affine',xform);<br />
h1=imtransform(h,tform_translate, 'XData',[1 size(h,2)],'Ydata',[1 size(h,1)]);<br />
filtro=filtro+h1;<br />
<br />
<br />
filtro=filtro/max(max(filtro));<br />
<br />
figure<br />
imshow(filtro)<br />
xt=fft2(x);<br />
xtc=fftshift(xt);<br />
xtcf=xtc.*filtro;<br />
figure<br />
imshow(log(abs(xtcf)),gray(10))<br />
title('transformada filtrada')<br />
xtcfd=ifftshift(xtcf);<br />
xr=ifft2(xtcfd);<br />
xr=abs(xr);<br />
figure<br />
imshow(xr/max(max(xr)))<br />
<br />
<br />
<br />
<br />
<br />
;***********************<br />
function xr=filtro_frec_gauss(x,radio)<br />
filtro=zeros(size(x));<br />
tamano=radio*9;<br />
radio_masc=int16(floor(tamano/2));<br />
<br />
h=fspecial('gauss',tamano,radio);<br />
h=h/max(max(h));<br />
[m n]=size(x);<br />
arribam=int16(m/2+radio_masc);<br />
abajom=int16(m/2-radio_masc);<br />
arriban=int16(n/2+radio_masc);<br />
abajon=int16(n/2-radio_masc);<br />
filtro(abajom:arribam,abajon:arriban)=h;<br />
figure<br />
imshow(filtro)<br />
xt=fft2(x);<br />
xtc=fftshift(xt);<br />
figure<br />
imshow(log(abs(xtc)),gray(10))<br />
title('transformada centrada')<br />
xtcf=xtc.*filtro;<br />
figure<br />
imshow(log(abs(xtcf)),gray(10))<br />
title('transformada filtrada')<br />
xtcfd=ifftshift(xtcf);<br />
xr=ifft2(xtcfd);<br />
<br />
xr=abs(xr);<br />
figure<br />
imshow(xr)<br />
<br />
<br />
<br />
;************************************<br />
function xr=filtro_frec_gauss_pasaalta(x,radio)<br />
filtro=zeros(size(x));<br />
tamano=radio*9;<br />
radio_masc=int16(floor(tamano/2));<br />
<br />
h=fspecial('gauss',tamano,radio);<br />
h=h/max(max(h));<br />
<br />
[m n]=size(x);<br />
arribam=int16(m/2+radio_masc);<br />
abajom=int16(m/2-radio_masc);<br />
arriban=int16(n/2+radio_masc);<br />
abajon=int16(n/2-radio_masc);<br />
filtro(abajom:arribam,abajon:arriban)=h;<br />
filtro=1-filtro;<br />
figure<br />
imshow(filtro)<br />
xt=fft2(x);<br />
xtc=fftshift(xt);<br />
figure<br />
imshow(log(abs(xtc)),gray(10))<br />
title('transformada centrada')<br />
xtcf=xtc.*filtro;<br />
figure<br />
imshow(log(abs(xtcf)),gray(10))<br />
title('transformada filtrada')<br />
xtcfd=ifftshift(xtcf);<br />
xr=ifft2(xtcfd);<br />
<br />
xr=abs(xr);<br />
figure<br />
imshow(xr)<br />
<br />
<br />
<br />
<br />
<br />
**************************************<br />
<br />
transparencias para el curso de vision [http://www.sc.ehu.es/ccwgrrom/transparencias/]<br />
[https://www.dropbox.com/s/qkxvj487iz3ycgz/IntroMRI.pdf?dl=0 Intro a MRI]<br />
: analisis de imagenes medicas, VBM, [https://www.dropbox.com/s/50l35la77rsn0p4/OASIS-2subj.zip VBM 2 sujetos de OASIS], [https://www.dropbox.com/s/xwhyplwwm8w6qjp/OASIS-40sujetos.zip VBM 40 sujetos de OASIS]<br />
algunos codigos matlab para vision por computador<br />
: analisis de imagenes medicas, fMRI, [https://www.dropbox.com/s/gp5bl43qivvz83x/fMRI_SPM.zip?m fMRI 1 sijeto audiivo]<br />
<br />
[[Imagen:Girasol.png|200px|thumb|]]<br />
**************************************<br />
<br />
% experimento de busqueda basado en corners<br />
<br />
cd('coil-100')<br />
d=dir;<br />
i=floor(rand*7201);<br />
x=imread(d(i+2).name);<br />
figure<br />
imshow(x)<br />
x=rgb2gray(x);<br />
x=x.*uint8(x>45);<br />
cornersx=corner(x,'Harris');<br />
for j=3:size(d,1);<br />
if mod(j,100)==0<br />
j<br />
end<br />
y=imread(d(j).name);<br />
y=rgb2gray(y);<br />
y=y.*uint8(y>45);<br />
cornersy=corner(y,'Harris');<br />
distancias(j-2)=distancia_euclidea_regularizada(cornersx,cornersy);<br />
end<br />
[d_ordenadas,indices]=sort(distancias);<br />
figure<br />
for j=1:10<br />
y=imread(d(indices(j)+2).name);<br />
<br />
subplot(2,5,j)<br />
imshow(y)<br />
<br />
end<br />
cd ..<br />
<br />
<br />
***************************************<br />
function distancia=distancia_corners_chebychev_2(p1,p2)<br />
<br />
for i=1:size(p1,1)<br />
for j=1:size(p2,1)<br />
d(i,j)=norm(p1(i,:)-p2(j,:));<br />
end<br />
end<br />
<br />
minimos_filas=min(d');<br />
distancia_filas=max(minimos_filas);<br />
minimos_cols=min(d);<br />
distancia_cols=max(minimos_cols);<br />
distancia=max(distancia_filas, distancia_cols);<br />
<br />
<br />
****************************************<br />
function distancia=distancia_corners_chebychev(p1,p2)<br />
<br />
for i=1:size(p1,1)<br />
for j=1:size(p2,1)<br />
d(i,j)=norm(p1(i,:)-p2(j,:));<br />
end<br />
end<br />
<br />
minimos=min(d');<br />
distancia=max(minimos);<br />
<br />
***************************************<br />
<br />
function distancia=distancia_euclidea_regularizada(p1,p2)<br />
<br />
for i=1:size(p1,1)<br />
for j=1:size(p2,1)<br />
d(i,j)=norm(p1(i,:)-p2(j,:));<br />
end<br />
end<br />
<br />
distancia=0;<br />
for i=1:size(p1,1)<br />
[minimo indicemin]=min(d(i,:));<br />
if minimo < inf<br />
d(:,indicemin)=inf;<br />
distancia=distancia+minimo;<br />
end<br />
end<br />
<br />
distancia=distancia + abs(size(p1,1)-size(p2,1))*1000;<br />
<br />
***************************************<br />
<br />
function y=normaliza_orientacion_3(x)<br />
<br />
mascarax=x>45;<br />
[r,c]=find(mascarax);<br />
[autovectores, pt]=princomp([r,c]);<br />
pt(:,1)=pt(:,1)+mean(r);<br />
pt(:,2)=pt(:,2)+mean(c);<br />
pt=floor(pt);<br />
y=zeros(size(x));<br />
<br />
for i=1:size(r,1)<br />
if pt(i,1)>0 & pt(i,1)<=size(x,1) & pt(i,2)>0 & pt(i,2)<=size(x,2)<br />
y(pt(i,1),pt(i,2))=x(r(i),c(i));<br />
end<br />
end<br />
<br />
y=imerode(imdilate(y,ones(3)),ones(3));<br />
<br />
*************************************<br />
<br />
function y=normaliza_orientacion_2(x)<br />
<br />
mascarax=x>45;<br />
[r,c]=find(mascarax);<br />
[autovectores, pt]=princomp([r,c]);<br />
pt(:,1)=pt(:,1)+mean(r);<br />
pt(:,2)=pt(:,2)+mean(c);<br />
pt=floor(pt);<br />
y=zeros(size(x));<br />
<br />
for i=1:size(r,1)<br />
if pt(i,1)>0 & pt(i,1)<=size(x,1) & pt(i,2)>0 & pt(i,2)<=size(x,2)<br />
y(pt(i,1),pt(i,2))=x(r(i),c(i));<br />
end<br />
end<br />
<br />
for i=1:size(y,1)<br />
for j=1:size(y,2)<br />
if y(i,j)==0<br />
iabajo=i-1;<br />
iarriba=i+1;<br />
jabajo=j-1;<br />
jarriba=j+1;<br />
if iabajo<1<br />
iabajo=1;<br />
end<br />
if iarriba>size(y,1)<br />
iarriba=size(y,1);<br />
end<br />
if jabajo<1<br />
jabajo=1;<br />
end<br />
if jarriba>size(y,2)<br />
jarriba=size(y,2);<br />
end<br />
<br />
vecinos=y(iabajo:iarriba,jabajo:jarriba);<br />
<br />
h=imhist(vecinos,gray(256));<br />
[maximo ind_maximo]=max(h);<br />
y(i,j)=ind_maximo-1;<br />
end<br />
<br />
end<br />
end<br />
<br />
<br />
*************************************<br />
<br />
function y=normaliza_orientacion(x)<br />
<br />
mascarax=x>45;<br />
[r,c]=find(mascarax);<br />
[autovectores, pt]=princomp([r,c]);<br />
pt(:,1)=pt(:,1)+mean(r);<br />
pt(:,2)=pt(:,2)+mean(c);<br />
pt=floor(pt);<br />
y=zeros(size(x));<br />
<br />
for i=1:size(r,1)<br />
if pt(i,1)>0 & pt(i,1)<=size(x,1) & pt(i,2)>0 & pt(i,2)<=size(x,2)<br />
y(pt(i,1),pt(i,2))=x(r(i),c(i));<br />
end<br />
end<br />
<br />
***************************************<br />
<br />
function dist=distancia_bordes_2(o1,o2)<br />
% objetos que son imagenes binarias de contornos<br />
<br />
[nfilas ncols]=size(o1);<br />
dist=0;<br />
for i=1:nfilas<br />
indices1=find(o1(i,:));<br />
indices2=find(o2(i,:));<br />
n1=size(indices1,2);<br />
n2=size(indices2,2);<br />
<br />
if n1>0 & n2 >0<br />
if n1<n2<br />
for j=1:n1<br />
dist=dist+abs(indices1(j)-indices2(j));<br />
end<br />
dist=dist+ncols*(n2-n1);<br />
else<br />
for j=1:n2<br />
dist=dist+abs(indices1(j)-indices2(j));<br />
end<br />
dist=dist+ncols*(n1-n2);<br />
end<br />
else<br />
dist=dist+ncols*abs(n2-n1);<br />
end<br />
<br />
end<br />
<br />
*************************************<br />
%%% parece hace cosas raras.... mejor no tocar<br />
<br />
function dist=distancia_bordes(o1,o2)<br />
% objetos que son imagenes binarias de contornos<br />
<br />
[nfilas ncols]=size(o1);<br />
dist=0;<br />
for i=1:nfilas<br />
ultimo_borde_o2=0;<br />
for j=1:ncols<br />
if o1(j)<br />
if ultimo_borde_o2<ncols<br />
k=ultimo_borde_o2;<br />
while not(o2(k)) & k<=ncols<br />
k=k+1;<br />
end<br />
if k==ncols<br />
dist=dist+ncols;<br />
else<br />
dist=dist+abs(j-k);<br />
end<br />
ultimo_borde_o2=k;<br />
else<br />
% los bordes sin correspondencia de o1 se penalizan<br />
dist=dist+ncols;<br />
end<br />
end<br />
end<br />
% los bordes sin correspondencia de o2 se penalizan<br />
if ultimo_borde_o2<ncols <br />
<br />
if sum(o2(i,ultimo_borde_o2+1:ncols))>0<br />
<br />
dist=dist + sum(o2(i,ultimo_borde_o2+1:ncols))*ncols;<br />
end<br />
end<br />
<br />
end<br />
<br />
************************************<br />
<br />
cd('coil-100')<br />
d=dir;<br />
i=floor(rand*7201);<br />
x=imread(d(i+2).name);<br />
x=rgb2gray(x);<br />
x=x.*uint8(x>45);<br />
ox=edge(x,'log',0,2);<br />
for j=3:size(d,1);<br />
if mod(j,100)==0<br />
j<br />
end<br />
y=imread(d(j).name);<br />
y=rgb2gray(y);<br />
y=y.*uint8(y>45);<br />
oy=edge(y,'log',0,2);<br />
dist(j-2)=distancia_bordes(ox,oy);<br />
end<br />
[d_ordenadas,indices]=sort(dist);<br />
figure<br />
for j=1:10<br />
y=imread(d(indices(j)+2).name);<br />
<br />
subplot(2,5,j)<br />
imshow(yind)<br />
colorbar<br />
end<br />
cd ..<br />
<br />
************************************<br />
<br />
<br />
function vocabulario=crea_vocabulario_color_kmeans(ncluster)<br />
% sobre un directorio de imagenes de color<br />
% tita es el umbral de inclusion del color en el vocabulario<br />
cd('coil-100')<br />
d=dir;<br />
vocabulario=[];<br />
pilacolores=[];<br />
ncolores=0;<br />
<br />
for i=3:size(d,1)<br />
if mod(i,100)==0<br />
i<br />
<br />
end<br />
y=imread(d(i).name);<br />
[yind, mapay]=rgb2ind(y,16);<br />
for k=1:16<br />
ncolores=ncolores+1;<br />
pilacolores(ncolores,:)=mapay(k,:);<br />
end<br />
<br />
end<br />
<br />
cd ..<br />
<br />
[indices vocabulario]=kmeans(pilacolores,ncluster);<br />
<br />
******************************<br />
<br />
% experimento busqueda en bd de color<br />
<br />
<br />
tita=0.1;<br />
v=crea_vocabulario_color(tita);<br />
<br />
bd=crea_bd_vocabulario(v);<br />
<br />
i=floor(rand*7201);<br />
<br />
for j=1:size(bd,1)<br />
dist(j)=norm(bd(i,:)-bd(j,:));<br />
end<br />
[d_ordenadas,indices]=sort(dist);<br />
<br />
cd('coil-100')<br />
d=dir;<br />
figure<br />
for j=1:50<br />
y=imread(d(indices(j)+2).name);<br />
<br />
subplot(10,5,j)<br />
imshow(y)<br />
<br />
end<br />
cd ..<br />
<br />
**************************<br />
<br />
function bd=crea_bd_vocabulario(v)<br />
% v es el vocabulario... histograma de color general<br />
%<br />
cd('coil-100')<br />
d=dir;<br />
ncolores=size(v,1);<br />
bd=[];<br />
for i=3:size(d,1)<br />
<br />
if mod(i,100)==0<br />
i<br />
end<br />
y=imread(d(i).name);<br />
yind=rgb2ind(y,v);<br />
h=imhist(yind,v);<br />
bd(i-2,:)=h;<br />
end<br />
cd ..<br />
<br />
************************<br />
<br />
function vocabulario=crea_vocabulario_color(tita)<br />
% sobre un directorio de imagenes de color<br />
% tita es el umbral de inclusion del color en el vocabulario<br />
cd('coil-100')<br />
d=dir;<br />
vocabulario=[];<br />
ncolores=0;<br />
for i=3:size(d,1)<br />
if mod(i,100)==0<br />
i<br />
end<br />
y=imread(d(i).name);<br />
[yind, mapay]=rgb2ind(y,16);<br />
for j=1:16<br />
incluircolor=1;<br />
for k=1:ncolores<br />
if norm(mapay(j,:)-vocabulario(k,:))<tita<br />
incluircolor=0;<br />
end<br />
end<br />
if incluircolor<br />
ncolores=ncolores+1;<br />
vocabulario(ncolores,:)=mapay(j,:);<br />
end<br />
end<br />
end<br />
cd ..<br />
<br />
<br />
************************<br />
% experimento basico de busqueda con emparejamiento greedy de mpas de color<br />
cd('coil-100')<br />
d=dir;<br />
i=floor(rand*7201);<br />
x=imread(d(i+2).name);<br />
[xind, mapax]=rgb2ind(x,16);<br />
for j=3:size(d,1);<br />
if mod(j,100)==0<br />
j<br />
end<br />
y=imread(d(j).name);<br />
[yind, mapay]=rgb2ind(y,16);<br />
<br />
dist(j-2)=distancia_colorbar_greedy(mapax,mapay);<br />
end<br />
[d_ordenadas,indices]=sort(dist);<br />
figure<br />
for j=1:10<br />
y=imread(d(indices(j)+2).name);<br />
<br />
subplot(2,5,j)<br />
imshow(y)<br />
<br />
end<br />
cd ..<br />
<br />
***************************<br />
% funcion de emparejamiento codicioso de mapas de colores<br />
<br />
function dmap=distancia_colorbar_greedy(m1,m2)<br />
<br />
ncolores=size(m1,1);<br />
libres=ones(ncolores,1);<br />
dmap=0;<br />
for i=1:ncolores<br />
%tenemos i-1 colores asignados<br />
dist=ones(ncolores,1)*inf;<br />
for j=1:ncolores<br />
if libres(j)<br />
<br />
dist(j)=norm(m1(i,:)-m2(j,:));<br />
<br />
end<br />
<br />
end<br />
[dmin jmin]=min(dist);<br />
libres(jmin)=0;<br />
dmap=dmap+dmin;<br />
end<br />
<br />
<br />
***************************<br />
<br />
% experimento basico de busqueda en la bd REMOVIENDO el color mas cercano a negro<br />
cd('coil-100')<br />
d=dir;<br />
i=floor(rand*7201);<br />
x=imread(d(i+2).name);<br />
[xind, mapa]=rgb2ind(x,16);<br />
for i=1:16<br />
grises(i)=norm(mapa(i,:));<br />
end<br />
[minimo,negro]=min(grises);<br />
for j=3:size(d,1);<br />
if mod(j,100)==0<br />
j<br />
end<br />
y=imread(d(j).name);<br />
yind=rgb2ind(y,mapa);<br />
yr=uint8(ind2rgb(yind,mapa));<br />
dist(j-2)=sum(sum(sum(abs(y(yind~=negro)-yr(yind~=negro)))));<br />
end<br />
[d_ordenadas,indices]=sort(dist);<br />
figure<br />
for j=1:10<br />
y=imread(d(indices(j)+2).name);<br />
yind=rgb2ind(y,mapa);<br />
subplot(2,5,j)<br />
imshow(yind,mapa)<br />
colorbar<br />
end<br />
figure<br />
for j=1:10<br />
y=imread(d(indices(j)+2).name);<br />
<br />
subplot(2,5,j)<br />
imshow(y)<br />
<br />
end<br />
cd ..<br />
<br />
************************<br />
<br />
% experimento basico de busqueda en la bd<br />
cd('coil-100')<br />
d=dir;<br />
i=floor(rand*7201);<br />
x=imread(d(i+2).name);<br />
[xind, mapa]=rgb2ind(x,16);<br />
for j=3:size(d,1);<br />
if mod(j,100)==0<br />
j<br />
end<br />
y=imread(d(j).name);<br />
yind=rgb2ind(y,mapa);<br />
yr=uint8(ind2rgb(yind,mapa));<br />
dist(j-2)=sum(sum(sum(abs(y-yr))));<br />
end<br />
[d_ordenadas,indices]=sort(dist);<br />
figure<br />
for j=1:10<br />
y=imread(d(indices(j)+2).name);<br />
yind=rgb2ind(y,mapa);<br />
subplot(2,5,j)<br />
imshow(yind,mapa)<br />
colorbar<br />
end<br />
cd ..<br />
*************************<br />
<br />
function disparidades=calculo_disparidad_correlacion(izq,dcha)<br />
<br />
bizq=izq<70;<br />
bdcha=dcha<70;<br />
figure(1)<br />
proy=sum(bizq');<br />
indices=find(proy>0);<br />
arriba=indices(1);<br />
indices=find(proy(arriba+1:size(izq,1))==0);<br />
abajo=indices(1)+arriba;<br />
subplot(2,1,1)<br />
imshow(izq(arriba:abajo,:))<br />
izq=izq(arriba-2:abajo,:);<br />
bizq=bizq(arriba-2:abajo,:);<br />
<br />
<br />
proy=sum(bdcha');<br />
indices=find(proy>0);<br />
arriba=indices(1);<br />
indices=find(proy(arriba+1:size(dcha,1))==0);<br />
abajo=indices(1)+arriba;<br />
subplot(2,1,2)<br />
imshow(dcha(arriba:abajo,:))<br />
dcha=dcha(arriba-2:abajo,:);<br />
bdcha=bdcha(arriba-2:abajo,:);<br />
<br />
comp_izq=bwlabel(bizq);<br />
s_izq=regionprops(comp_izq,'all');<br />
comp_dcha=bwlabel(bdcha);<br />
s_dcha=regionprops(comp_dcha,'all');<br />
<br />
nobjetos=0;<br />
for c=1:size(s_izq,1);<br />
if s_izq(c).Area>1000<br />
nobjetos=nobjetos+1;<br />
correlacion=[];<br />
x=floor(s_izq(c).BoundingBox)<br />
abajo=x(2)+x(4);<br />
if x(2)+x(4)> size(dcha,1)<br />
abajo=size(dcha,1);<br />
end<br />
<br />
c_izq=izq(x(2):abajo,x(1):x(1)+x(3));<br />
<br />
for i=1:x(1)-1<br />
size(dcha)<br />
<br />
c_dcha=dcha(x(2):abajo,x(1)-i:x(1)-i+x(3));<br />
correlacion(i)=sum(sum(abs(c_izq-c_dcha)));<br />
end<br />
figure<br />
plot(correlacion)<br />
[minimo imin]=min(correlacion);<br />
disparidades(nobjetos)=imin;<br />
figure<br />
subplot(1,2,1)<br />
imshow(c_izq)<br />
c_dcha=dcha(x(2):abajo,x(1)-imin:x(1)-imin+x(3));<br />
subplot(1,2,2)<br />
imshow(c_dcha) <br />
end<br />
end<br />
<br />
<br />
*************************<br />
<br />
function disparidad=calculo_disparidad_proyecciones(izq,dcha,umbral)<br />
<br />
%asumo que los objetos son oscuros y el fondo blanco<br />
izq=izq<umbral;<br />
dcha=dcha<umbral;<br />
proyeccion_izq=sum(izq);<br />
proyeccion_dcha=sum(dcha);<br />
<br />
figure(1)<br />
plot(proyeccion_izq)<br />
figure(2)<br />
plot(proyeccion_dcha)<br />
<br />
%primer componente<br />
<br />
for i_1=1:1000<br />
if proyeccion_izq(i_1)>0<br />
break<br />
end<br />
end<br />
for i_2=i_1:1000<br />
if proyeccion_izq(i_2)==0<br />
break<br />
end<br />
end<br />
for j_1=1:1000<br />
if proyeccion_dcha(j_1)>0<br />
break<br />
end<br />
end<br />
for j_2=j_1:1000<br />
if proyeccion_dcha(j_2)==0<br />
break<br />
end<br />
end<br />
<br />
% calcular el centro de las proyecciones de los componentes<br />
c_izq=sum((1:i_2).*proyeccion_izq(1:i_2)/sum(proyeccion_izq(1:i_2)));<br />
c_dcha=sum((1:j_2).*proyeccion_dcha(1:j_2)/sum(proyeccion_dcha(1:j_2)));<br />
<br />
disparidad(1)= c_izq-c_dcha;<br />
<br />
%anulo primer componente<br />
<br />
proyeccion_izq(1:i_2)=0;<br />
proyeccion_dcha(1:j_2)=0;<br />
<br />
% proceso segundo componente....<br />
<br />
figure(3)<br />
plot(proyeccion_izq)<br />
figure(4)<br />
plot(proyeccion_dcha)<br />
<br />
%segundo componente<br />
<br />
for i_1=1:1000<br />
if proyeccion_izq(i_1)>0<br />
break<br />
end<br />
end<br />
for i_2=i_1:1000<br />
if proyeccion_izq(i_2)==0<br />
break<br />
end<br />
end<br />
for j_1=1:1000<br />
if proyeccion_dcha(j_1)>0<br />
break<br />
end<br />
end<br />
for j_2=j_1:1000<br />
if proyeccion_dcha(j_2)==0<br />
break<br />
end<br />
end<br />
<br />
% calcular el centro de las proyecciones de los componentes<br />
c_izq=sum((1:i_2).*proyeccion_izq(1:i_2)/sum(proyeccion_izq(1:i_2)));<br />
c_dcha=sum((1:j_2).*proyeccion_dcha(1:j_2)/sum(proyeccion_dcha(1:j_2)));<br />
<br />
disparidad(2)= c_izq-c_dcha;<br />
<br />
*******************************<br />
function disparidad=calculo_disparidad_estereo_naive(izq,dcha)<br />
<br />
%imagenes en niveles de grises<br />
% umbral_izq=metodo_otsu(izq);<br />
% umbral_dcha=metodo_otsu(dcha);<br />
<br />
umbral_izq=60;<br />
umbral_dcha=60;<br />
<br />
izq=izq>umbral_izq;<br />
dcha=dcha>umbral_dcha;<br />
izq=1-izq;<br />
dcha=1-dcha;<br />
figure(1)<br />
imshow(izq)<br />
title('izquierda')<br />
figure(2)<br />
imshow(dcha)<br />
title('derecha')<br />
[comp_izq, num_comp_izq]=bwlabel(izq);<br />
[comp_dcha, num_comp_dcha]=bwlabel(dcha);<br />
for i_izq=1:num_comp_izq<br />
if sum(sum(comp_izq==i_izq))>500<br />
break<br />
end<br />
end<br />
for i_dcha=1:num_comp_dcha<br />
if sum(sum(comp_dcha==i_dcha))>500<br />
break<br />
end<br />
end<br />
figure(3)<br />
imshow(comp_izq==i_izq)<br />
title('objeto izquierda')<br />
figure(4)<br />
imshow(comp_dcha==i_dcha)<br />
title('objeto derecha')<br />
c_izq=calcula_centroide(comp_izq==i_izq);<br />
c_dcha=calcula_centroide(comp_dcha==i_dcha);<br />
disparidad=c_izq(2)-c_dcha(2);<br />
<br />
****************************<br />
function centroide=calcula_centroide(x)<br />
% x imagen binaria<br />
[n m]=size(x);<br />
p_filas=sum(x')/sum(sum(x));<br />
<br />
p_cols=sum(x)/sum(sum(x));<br />
<br />
centro_filas=sum((1:n).*p_filas);<br />
centro_cols=sum((1:m).*p_cols);<br />
<br />
centroide=[centro_filas,centro_cols];<br />
****************************<br />
function umbral=metodo_otsu(x)<br />
h=imhist(x,256);<br />
size(h)<br />
for T=2:255<br />
v1=var(h(1:T).*(1:T)');<br />
v2=var(h(T+1:256).*(T+1:256)');<br />
P1=sum(h(1:T));<br />
P2=sum(h(T+1:256));<br />
vintra(T)=P1*v1+P2*v2;<br />
end<br />
plot(vintra)<br />
vintra(1)=inf;<br />
[minvarintra umbral]=min(vintra);<br />
<br />
****************************<br />
<br />
%descomposicion en planos de bits x es la imagen original<br />
<br />
x=double(cara);<br />
plano_8=floor(x/2^7);<br />
<br />
x=rem(x,2^7);<br />
<br />
plano_7=floor(x/2^6);<br />
<br />
x=rem(x,2^6);<br />
<br />
plano_6=floor(x/2^5);<br />
<br />
x=rem(x,2^5);<br />
<br />
plano_5=floor(x/2^4);<br />
<br />
x=rem(x,2^4);<br />
plano_4=floor(x/2^3);<br />
<br />
x=rem(x,2^3);<br />
plano_3=floor(x/2^2);<br />
<br />
x=rem(x,2^2);<br />
plano_2=floor(x/2^1);<br />
<br />
x=rem(x,2^1);<br />
plano_1=x;<br />
<br />
<br />
figure(1)<br />
subplot(2,4,1)<br />
imshow(plano_8)<br />
subplot(2,4,2)<br />
imshow(plano_7)<br />
subplot(2,4,3)<br />
imshow(plano_6)<br />
subplot(2,4,4)<br />
imshow(plano_5)<br />
subplot(2,4,5)<br />
imshow(plano_4)<br />
subplot(2,4,6)<br />
imshow(plano_3)<br />
subplot(2,4,7)<br />
imshow(plano_2)<br />
subplot(2,4,8)<br />
imshow(plano_1)<br />
<br />
% reconstruccion a partir de los planos de bits<br />
<br />
reconstruccion=zeros(size(cara));<br />
<br />
reconstruccion=plano_1;<br />
reconstruccion=reconstruccion + plano_2*2^1;<br />
reconstruccion=reconstruccion + plano_3*2^2;<br />
reconstruccion=reconstruccion + plano_4*2^3;<br />
reconstruccion=reconstruccion + plano_5*2^4;<br />
reconstruccion=reconstruccion + plano_6*2^5;<br />
reconstruccion=reconstruccion + plano_7*2^6;<br />
reconstruccion=reconstruccion + plano_8*2^7;<br />
figure (2)<br />
imshow(reconstruccion, gray(256))<br />
<br />
% reconstruccion con un watermark sencillo en el primer plano de bits<br />
<br />
reconstruccion=zeros(size(cara));<br />
<br />
<br />
reconstruccion(20:80,20:80)=fspecial('disk',30)>0;<br />
<br />
reconstruccion=reconstruccion + plano_2*2^1;<br />
reconstruccion=reconstruccion + plano_3*2^2;<br />
reconstruccion=reconstruccion + plano_4*2^3;<br />
reconstruccion=reconstruccion + plano_5*2^4;<br />
reconstruccion=reconstruccion + plano_6*2^5;<br />
reconstruccion=reconstruccion + plano_7*2^6;<br />
reconstruccion=reconstruccion + plano_8*2^7;<br />
figure (3)<br />
imshow(reconstruccion, gray(256))<br />
<br />
<br />
*************************<br />
function modelo=construir_modelo(nimagen)<br />
cd orlfaces<br />
d=dir;<br />
modelo=zeros(112,92,size(d,1)-2);<br />
for i=3:size(d,1);<br />
cd (d(i).name)<br />
ds=dir;<br />
modelo(:,:,i-2)=imread(ds(nimagen+2).name);<br />
cd ..<br />
end<br />
cd ..<br />
<br />
*******************************<br />
function modelo=construir_modelo_LOO<br />
cd orlfaces<br />
d=dir;<br />
modelo=zeros(112,92,size(d,1)-2,10);<br />
for i=3:size(d,1);<br />
cd (d(i).name)<br />
ds=dir;<br />
for j=3:size(ds,1)<br />
modelo(:,:,i-2,j-2)=imread(ds(j).name);<br />
end<br />
cd ..<br />
end<br />
cd ..<br />
*******************************<br />
function [error_acumulado, matriz_confusion]=calcular_error_test(modelo,nimagen)<br />
<br />
cd orlfaces<br />
d=dir;<br />
nclases=size(d,1)-2;<br />
distancia=zeros(nclases,1);<br />
matriz_confusion=zeros(nclases);<br />
error_acumulado=0;<br />
for i=3:size(d,1);<br />
<br />
cd(d(i).name)<br />
ds=dir;<br />
for j=3:size(ds,1)<br />
if j ~= nimagen + 2<br />
y=double(imread(ds(j).name));<br />
for k=1:size(d,1)-2<br />
distancia(k)=sum(sum(abs(modelo(:,:,k)-y)));<br />
end<br />
% <br />
<br />
[dmin, clase]=min(distancia);<br />
matriz_confusion(i-2,clase)=matriz_confusion(i-2,clase)+1;<br />
error= (i-2) ~=clase;<br />
error_acumulado= error_acumulado + error;<br />
end<br />
end<br />
<br />
cd ..<br />
end<br />
cd ..<br />
<br />
**********************************<br />
function [aciertos, error_acum]=calculo_error_LOO(m)<br />
m=double(m);<br />
[filas,cols,nsujetos,nimagenes]=size(m)<br />
error_acum=0;<br />
aciertos=0;<br />
for i=1:40<br />
i<br />
for j=1:10<br />
test=squeeze(m(:,:,i,j));<br />
distancias=zeros(nsujetos,nimagenes);<br />
<br />
for k=1:nsujetos<br />
for l=1:nimagenes<br />
<br />
distancias(k,l)=norm(test-m(:,:,k,l));<br />
end<br />
end<br />
distancias(distancias==0)=inf;<br />
[mincols rowinds]=min(distancias);<br />
[minglobal colind]=min(mincols);<br />
clase=rowinds(colind);<br />
if clase==i<br />
aciertos=aciertos+1;<br />
else<br />
error_acum=error_acum+1;<br />
end<br />
end<br />
end</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17412
Usuario:Daria.chizhik
2014-11-30T00:09:29Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
;Darya Chyzhyk, Manuel Graña<br />
:Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160. DOI 10.1016/j.neucom.2014.09.075 JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Semana de la ciencia==<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17410
Usuario:Daria.chizhik
2014-11-30T00:08:31Z
<p>Chyzhyk.darya: </p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
;Darya Chyzhyk, Manuel Graña<br />
:Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features [http://www.sciencedirect.com/science/article/pii/S0925231214013204]<br />
: Neurocomputing Volume 151, Part 1, 3 March 2015, Pages 151–160<br />
: DOI 10.1016/j.neucom.2014.09.075<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Semana de la ciencia==<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Archivo:Chyzhyk.jpg&diff=17404
Archivo:Chyzhyk.jpg
2014-11-27T10:49:48Z
<p>Chyzhyk.darya: subió una nueva versión de «Archivo:Chyzhyk.jpg»</p>
<hr />
<div></div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17402
Usuario:Daria.chizhik
2014-11-27T10:43:50Z
<p>Chyzhyk.darya: /* 2015 */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña ([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf])<br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077. JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features<br />
: Neurocomputing (aceptado 18 de sept)<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Semana de la ciencia==<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17400
Usuario:Daria.chizhik
2014-11-27T10:43:13Z
<p>Chyzhyk.darya: </p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2015==<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña <br />
: An active learning approach for stroke lesion segmentation on multimodal MRI data <br />
: Neurocomputing, Volume 150, Part A, 20 February 2015, Pages 26-36, ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2014.01.077.<br />
([http://www.sciencedirect.com/science/article/pii/S0925231214012466 pdf]), JCR 2013 2.005 (Q1 CSAI)<br />
<br />
==2014==<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features<br />
: Neurocomputing (aceptado 18 de sept)<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Semana de la ciencia==<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17342
Usuario:Daria.chizhik
2014-11-18T10:35:59Z
<p>Chyzhyk.darya: /* Darya Chyzhyk */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2014==<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features<br />
: Neurocomputing (aceptado 18 de sept)<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña<br />
: An active learning approach for Stroke lesion segmentation on multimodal MRI data<br />
: Neurocomputing (aceptado 1 febrero)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Semana de la ciencia==<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17340
Usuario:Daria.chizhik
2014-11-18T10:26:36Z
<p>Chyzhyk.darya: /* Darya Chyzhyk */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
[https://orcid.org/0000-0002-9333-6122 ORCID] identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2014==<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features<br />
: Neurocomputing (aceptado 18 de sept)<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña<br />
: An active learning approach for Stroke lesion segmentation on multimodal MRI data<br />
: Neurocomputing (aceptado 1 febrero)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Semana de la ciencia==<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya
https://ehu.eus/ccwintco/index.php?title=Usuario:Daria.chizhik&diff=17338
Usuario:Daria.chizhik
2014-11-18T10:17:37Z
<p>Chyzhyk.darya: /* Darya Chyzhyk */</p>
<hr />
<div>= Darya Chyzhyk =<br />
“Little by little, one travels far”. ― J.R.R. Tolkien. <br />
<br />
[[Imagen:Pajaro.jpg |right|thumb|200px|]]<br />
[[Imagen:Chyzhyk.jpg |right|thumb|200px|]]<br />
<br />
[http://scholar.google.com/citations?user=dGLbN_IAAAAJ Google Scholar]<br />
<br />
[http://www.researchgate.net/profile/Darya_Chyzhyk ResearchGate]<br />
<br />
ORCID identifier is 0000-0002-9333-6122<br />
<br />
= Personal data =<br />
<table border=0 cellspacing=10 cellpadding=10 ><tr><td valign=top><br />
:[[Imagen:Thesis-cover-Chyzhyk.jpg |left|thumb|200px|]] <br />
</td><td><br />
: Ph.D. in Computer Science<br />
: Thesis title: [[media:Darya-Chyzhyk-thesis-draft-2013-06-03.pdf| Contributions of Lattice Computing to Medical Image Processing]]<br />
: Thesis advisor: Manuel Graña Romay<br />
: Facultad de Informática UPV/EHU 26 de Julio de 2013, Apto cum laude por unanimidad<br />
: [[media:Chyzhyk-thesis-Slides.pdf| Slides of the Thesis]]<br />
</td> </tr></table><br />
<br />
= Contact data =<br />
<br />
* <b>E-mail:</b> darya.chyzhyk@ehu.es<br />
* <b>Phone number:</b> 0034 943 01 8047 <br />
* <b>Address:</b> <br />
** Darya Chyzhyk<br />
** Computational Intelligence Group<br />
** Computer Science Faculty - Lab. 307<br />
** University Of The Basque Country (UPV/EHU) <br />
** Paseo Manuel Lardizabal 1 - CP: 20018 Donostia-San Sebastián (GUIPUZCOA) - Spain<br />
<br />
= Reseach Areas =<br />
Medical Image Analysis, Machine learning and Image Processing.<br />
<br />
= Publicaciones =<br />
== Publicaciones internas ==<br />
<br />
* [[Media:Chyzhyk Reconocimiento automatico del alfabeto doctilologico 1.pdf | Trabajo sobre reconocimiento visual del alfabeto dactilológico]]<br />
<br />
* [[media:GIC-UPV-EHU-RR-2010-10-14.pdf|Feature extraction from structural MRI images based on VBM: data from OASIS database ]]<br />
<br />
==2014==<br />
; Darya Chyzhyk, Manuel Graña<br />
: Classification of Schizophrenia patients on Lattice Computing resting-state fMRI features<br />
: Neurocomputing (aceptado 18 de sept)<br />
: JCR 2013 2.005 (Q1 CSAI)<br />
<br />
; Manuel Graña and Darya Chyzhyk<br />
: One side lattice memory reduced ordering function allows discrimination in resting state fMRI<br />
: IEEE World Congress on Computational Intelligence (WCCI), Special Session: Lattice Computing, July 6-11 2014, Beijinn, China, [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6891700&searchWithin%3DOne+side+lattice+memory+reduced+ordering+function+allows+discrimination+in+resting+state+fMRI%26sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A6891523%29 link]<br />
<br />
; Darya Chyzhyk, Manuel Graña, Ann Shinn & Dost Ongur <br />
: Discrimination of auditory hallucination sensitive Schizophrenia patients from resting state functional MRI<br />
: NeuroGune the second meeting of the Basque research community in Neuroscience, 9 July, 2014, San Sebastian, Spain. <br />
: Ponencia: poster<br />
<br />
; Darya Chyzhyk and Manuel Graña <br />
: Findings in resting-state fMRI by differences from K-means clustering<br />
: InMed, 9-11 July, 2014, San-Sebstian, Spain<br />
<br />
; Alexandre Savio, Darya Chyzhyk, Manuel Graña <br />
: Computer Aided Diagnosis of Schizophrenia based on local-activity measures of resting-state fMRI<br />
: Hybrid Artificial Intelligence Systems, Volume 8480, pp 1-12, 2014<br />
: 9th International Conference, HAIS 2014, Salamanca, Spain, June 11-13, 2014. Proceedings.<br />
: Print ISBN 978-3-319-07616-4, Online ISBN 978-3-319-07617-1, Publisher Springer International Publishing, DOI 10.1007/978-3-319-07617-1_1<br />
<br />
; Darya Chyzhyk, Alexandre Savio, Manuel Graña, <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI [http://www.sciencedirect.com/science/article/pii/S0925231213010096 pdf]<br />
: Neurocomputing, Volume 128, 27 March 2014, Pages 73-80, <br />
: ISSN 0925-2312, http://dx.doi.org/10.1016/j.neucom.2013.01.065.<br />
: JCR (2012) 1.634 (T1, Q2 CSAI)<br />
<br />
; Darya Chyzhyk, Rosalía Dacosta-Aguayo, Maria Mataró, Manuel Graña<br />
: An active learning approach for Stroke lesion segmentation on multimodal MRI data<br />
: Neurocomputing (aceptado 1 febrero)<br />
<br />
==2013==<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Results on a Lattice Computing Based Group Analysis of Schizophrenic Patients on Resting State fMRI<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 131--139. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; M. Termenon, D. Chyzhyk, M. Graña, A. Barros-Loscertales, and C. Avila<br />
: Cocaine Dependent Classification on MRI Data Extracting Features from Voxel Based Morphometry<br />
: J.M. Ferrandez et al. (Eds.): IWINAC 2013, Part II, LNCS 7931, pp. 140--148. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-38621-3, Online ISBN: 978-3-642-38622-0<br />
: ISSN 0302-9743<br />
<br />
; Darya Chyzhyk, Borja Ayerdi, Josu Maiora <br />
: Active Learning with Bootstrapped Dendritic Classifier applied to medical image segmentation <br />
: Pattern Recognition Letters 34 (2013), pp. 1602-1608<br />
: DOI: 10.1016/j.patrec.2013.03.024, ISSN 0167-8655<br />
: JCR (2011) 1.034, 5-Year Impact Factor: 1.724 (JRC) (Q3 CSAI)<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Bootstrapped Dendritic Classifiers in MRI analysis for Alzheimer’s Disease recognition. [http://link.springer.com/chapter/10.1007/978-3-642-42017-7_10# pdf]<br />
: Advanced Techniques for Knowledge Engineering and Innovative Applications. Editors: Jeffrey W. Tweedale, Lakhmi C. Jain.<br />
: Communications in Computer and Information Science Volume 246, 2013, pp 136-142<br />
: DOI 10.1007/978-3-642-42017-7_10<br />
: Print ISBN 978-3-642-42016-0<br />
: Online ISBN 978-3-642-42017-7<br />
: Series ISSN 1865-0929<br />
<br />
; Darya Chyzhyk and Manuel Graña<br />
: Discrimination of Resting-State fMRI for Schizophrenia Patients with Lattice Computing Based Features [[media: Chyzhyk-Slides-HAIS2013-2013-09-05.pdf|Slides]] <br />
: J.-S. Pan et al. (Eds.): HAIS 2013, LNAI 8073, pp. 482--490. Springer, Heidelberg (2013)<br />
: Print ISBN: 978-3-642-40845-8, Online ISBN: 978-3-642-40846-5 <br />
: ISSN: 0302-9743<br />
: DOI 10.1007/978-3-642-40846-5_48<br />
<br />
<br />
: ELM -> Applied Soft Computing<br />
: HIS SI -> TNNLS<br />
<br />
==2012==<br />
<br />
; Gerhard X. Ritter, Darya Chyzhyk, Gonzalo Urcid, Manuel Graña<br />
: A Novel Lattice Associative Memory Based on Dendritic Computing" [[media: HAIS12-SS11-2169.pdf|draft]] <br />
: Hybrid Artificial Intelligent Systems (HAIS 2012): Special Session on Hybrid Computational Intelligence and Lattice computing for image and signal processing, Salamanca, Spain. March 28-30, 2012. [[media: HAIS2012-Chyzhyk-2012-03-28.pdf|Slides]]<br />
: Published in: HAIS'2012 Proceedings of the 7th international conference on Hybrid Artificial Intelligent Systems - Volume Part II, pp. 491-502, 2012. LNCS 7209 <br />
: ISBN: 978-3-642-28930-9<br />
<br />
; Darya Chyzhyk, Alexandre Savio and Manuel Graña <br />
: Evolutionary ELM wrapper feature selection for Alzheimer's disease CAD on anatomical brain MRI, <br />
: ELM 2012, Singapore, 11-13 December 2012<br />
<br />
; Darya Chyzhyk<br />
: Bootstrapped Dendritic Classifiers for Alzheimer’s Disease classification on MRI features <br />
: [http://booksonline.iospress.nl/Content/View.aspx?piid=31939 Advances in Knowledge-Based and Intelligent Information and Engineering Systems.]<br />
: Frontiers in Artificial Intelligence and Applications (FAIA) series, Vol. 243, pages 2251 - 2258, 2012.<br />
: Eds: Manuel Graña, Carlos Toro, Jorge Posada, Robert J. Howlett and Lakhmi C. Jain.<br />
<br />
; Manuel Graña, Darya Chyzhyk<br />
: Hybrid multivariate morphology using lattice auto-associative memories for resting-state fMRI network discovery<br />
: HIS 2012, Pune India, 4-7 december 2012 [[media:Dasha presentacion his 2012.pdf|slides]]<br />
: Published in: Hybrid Intelligent Systems (HIS), 2012 12th International Conference on, 537-542, IEEE 2012 <br />
: DOI: 10.1109/HIS.2012.6421391 <br />
: Print ISBN: 978-1-4673-5114-0<br />
<br />
==2011==<br />
<br />
; Darya Chyzhyk, Manuel Graña, Alexandre Savio, Josu Maiora<br />
: Hybrid Dendritic Computing with Kernel-LICA applied to Alzheimer’s Disease detection in MRI. [[media: Chyzhyk-Grana_Neurocomputing_2012.pdf|PDF]]<br />
: Neurocomputing, 2012, Volumen 75, issue 1, pp. 72-77<br />
: doi:10.1016/j.neucom.2011.02.024<br />
: ISSN 0925-2312<br />
: ISI JCR (2006) 0.860, (2007) 0.865, (2008) 1.234 (2009) 1.440<br />
<br />
; Darya Chyzhyk, Ann K. Shinn, and Manuel Graña<br />
: Exploration of LICA Detections in Resting State fMRI. [[media: Darya-IWINAC-2011-draft.pdf|draft]]<br />
: 4th. International work-Conference on the Interplay between Natural and Artificial Computation ([http://www.iwinac.uned.es/current/ IWINAC 2011]), La Palma, Canary Islands, Spain. 30 May - 3 June, 2011.<br />
: Published in: IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation: new challenges on bioinspired applications - Volume Part II, pp.104-111, <br />
: ISBN: 978-3-642-21325-0<br />
<br />
; Darya Chyzhyk, Manuel Graña<br />
: Optimal Hyperbox shrinking in Dendritic Computing applied to Alzheimer’s Disease detection in MRI. [[media:dendritic-darya-SOCO-2011.pdf|draft]]. [[media:Chyzhyk-SOCO2011-slides.pdf|slides]].<br />
: Conference on Soft Computing Models in Industrial and Environmental Applications (SOCO 2011), Salamanca, Spain. 6-8th April, 2011.<br />
: Advances in Intelligent and Soft Computing, 2011, Volume 87/2011, 543-550, DOI: 10.1007/978-3-642-19644-7_57 <br />
: Editors: Emilio Corchado, Václav Snášel, Javier Sedano, Aboul Ella Hassanien, José Luis Calvo, Dominik Sle¸zak<br />
: Publisher: Springer Berlin / Heidelberg<br />
: ISBN: 978-3-642-19643-0<br />
<br />
==2010==<br />
;Darya Chyzhyk, Maite Termenon, and Alexandre Savio<br />
:A Comparison of VBM results by SPM, ICA and LICA.<br />
:Hybrid Artificial Intelligent Systems, Part II, Emilio S. Corchado Rodriguez; Manuel Grana Romay; Alexandre Manhaes Savio (Eds.), (LNCS/LNAI) Vol. 6077, Springer-Verlag Berlin Heidelberg, 2010, pp. 429 - 435 Vol. 2 <br />
:ISBN 978-3-642-13802-7<br />
<br />
;Manuel Graña, Darya Chyzhyk, Maite García-Sebastián, Carmen Hernández<br />
:Lattice Independent Component Analysis for functional Magnetic Resonance Imaging [[media:LICA-inf-sciences-marzo-2010.pdf|DRAFT]]<br />
: Information Sciences 181, issue 10, 2011, pp. 1910-1928 <br />
: Impact factor JCR (2008): 3.095 (2009) 3.291<br />
: [http://dx.doi.org/10.1016/j.ins.2010.09.023 DOI]<br />
<br />
; Alexandre Savio; Maria T Garcia-Sebastian; Darya Chyzhyk; Carmen Hernandez; Manuel Graña; Andone Sistiaga; Adolfo Lopez de Munain; Jorge Villanua<br />
: Neurocognitive disorder detection based on Feature Vectors extracted from VBM analysis of structural MRI<br />
: Computers in Biology and Medicine 41 (2011), pp. 600-610 [http://dx.doi.org/10.1016/j.compbiomed.2011.05.010 DOI] ISSN: 0010-4825<br />
: ISI Impact JCR (2009) 1.269 (2010) 1.112<br />
<br />
;Alexandre Savio, Maite García-Sebastián, Andone Sistiaga, Darya Chyzhyk, Esther Fernández, Fermín Moreno, Elsa Fernández, Manuel Graña, Jorge Villanúa, Adolfo López de Munain<br />
:Machine Learning Approach for Myotonic Dystrophy Diagnostic Support from MRI <br />
:in Juan M. Górriz, Elmar W. Lang and Javier Ramírez (Eds), Recent Advances in Biomedical Signal Processing, 93 - 101<br />
:2010 Bentham Science Publishers, ISBN: 978-1-60805-570-8 <br />
<br />
; Chyzhyk, D. and Savio, A. <br />
: Feature extraction from structural MRI images based on VBM: data from OASIS database <br />
: Technical Report GIC-UPV-EHU-RR-2010-10-14, Grupo de Inteligencia Computacional UPV/EHU, 2010<br />
<br />
==2009==<br />
;Darya Chyzhyk<br />
:Inferencia en FSL para morfometria basada en vóxel (voxel base morphometry). <br />
:III Jornada de Inteligencia Computacional, JIC’09. Servicio editorial de la UPV/EHU, 2009. ISBN 978-84-9860-320-0<br />
<br />
<br />
<br />
=Activities=<br />
== Reviews ==<br />
* Neurocomputing 2012<br />
* Journal of Mathematical Imaging and Vision<br />
* HAIS 2010<br />
* An International Journal on Multi-Sensor, Multi-Source Information Fusion<br />
* Pattern Recognition Letters<br />
* Neurocomputing 2013<br />
* Computers in Biology and Medicine<br />
<br />
== Organizer ==<br />
* Local organizing committee member of the <br />
** 5th International Conference on Hybrid Artificial Intelligence Systems – HAIS 2010 in San Sebastian (Spain), 23-25 de Junio, 2010.<br />
** 16th International Conference on Knowledge-Based and Intelligent Information & Engineering Systems – ([http://www.mirlabs.net/nwesp12/ KES 2012]) 10, 11 & 12 September 2012, San Sebastian, Spain.<br />
* Programme committee member of the <br />
** CASoN-2011, NWeSP-2011, NaBIC-2011<br />
** HAIS-2012, NaBIC-2012, CASoN-2012, WeSP-2012, WICT-2012, CISIS 2012 (special session on Intelligent Network Security and Survivability), ELM-2012<br />
** KES-2013, HAIS-2013, CASoN-2013, ELM-2013, HIS-2013, NaBIC-2013, WeSP-2013, WICT-2013<br />
** WCCI-2014, KES-2014, HAIS-2014, CASoN-2014, NaBIC-2014, WICT-2014, ISDA-2014<br />
<br />
==Internship==<br />
* University of Florida.<br />
: Department of Computer &Information Science & Engineering<br />
: Responsable investigator: Professor Gerhard X. Ritter<br />
: September 15th – December 15th, 2011<br />
* Radboud University<br />
: Machine Learning Group, Intelligent Systems Institute for Computing and Information Sciences (iCIS) Faculty of Science<br />
: Responsable investigator: Professor Tom Heskes<br />
: 1st of November 2012 – 30th of January 2013<br />
<br />
== Research projects participation ==<br />
* Project Title: Computational Intelligence techniques for brain imaging and the neurosciences<br />
** Organism: University of Basque Country<br />
** Reference: MICINN Project, TIN2011-23823<br />
** Principal Investigator: Prof. Manuel Graña Romay<br />
** Date: 2011 – 2013.<br />
<br />
==Courses==<br />
* FSL & FreeSurfer Course 2010<br />
: Heidelberg, Germany<br />
: 31 May - 4 June 2010<br />
* Course on Statistical Parametric Mapping (SPM)<br />
: Zurich, Switzerland<br />
: 16-18 February 2011<br />
* International Summer Course on Medical Imaging using Bio-inspired and Soft Computing (MIBISOC)<br />
: European Centre of Soft Computing, Mieres, Spain<br />
: 4-8 July 2011<br />
<br />
==Semana de la ciencia==<br />
* IX Semana de la Ciencia 2009, Stand: Las conexiones de tu cerebro<br />
* X Semana de la Ciencia 2010, Stand: Mundo virtual<br />
* XII Semana de la Ciencia 2012, Stand: Las conexiones de tu cerebro<br />
<br />
=Congress of interest=<br />
<br />
* HAIS 2012, Salamanca, Spain, March 28th-30th, 2012.<br />
http://hais.usal.es/<br />
* ISBI 2012, 2-5 May, Barcelona, Spain.<br />
http://www.biomedicalimaging.org/index.php/authors/call-for-papers<br />
* ESANN 2012, Bruges, Belgium, 25 to 27 April 2012 - 20th anniversary !<br />
http://www.esann.org/<br />
* Neuroinformatics 2012, Munich, Germany, September 10-12<br />
http://www.neuroinformatics2012.org/<br />
deadline February - April, 2012<br />
* MICCAI 2013<br />
16th International Conference on Medical Image Computing and Computer-Assisted Intervention<br />
21 September 2013 - 26 September 2013<br />
Nagoya, Japan<br />
http://www.miccai.org/<br />
* [http://mbic.unimaas.nl/redirect.asp?page=WorkShops | M-BIC Workshop Series], rsfMRI<br />
* ISBI<br />
[http://spie.org/x12166.xml?WT.mc_id=RMI13CLVW |ISBI]<br />
* ICIP<br />
20th IEEE International Conference on Image Processing [http://www.ieee.org/conferences_events/conferences/conferencedetails/index.html?Conf_ID=15918 ICIP]<br />
16 September 2013 - 18 September 2013<br />
Melbourne, VIC, Australia<br />
* Toolkit of Cognitive Neuroscience [http://www.ru.nl/donders/agenda-news/courses/toolkits-2012/ Cognitive Neuroscience]<br />
<br />
=Images=<br />
* fMRI<br />
* sMRI<br />
* Resting-state fMRI <br />
** [http://restfmri.net/| REST]<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** [http://www.mendeley.com/groups/1677121/cmi-resting-state-fmri-library/papers/ CMI Resting State fMRI Library]<br />
** [http://fsl.fmrib.ox.ac.uk/analysis/royalsoc8/ 8 popular networks]<br />
* DTI<br />
** [http://www.mendeley.com/groups/2042613/cmi-diffusion-tensor-imaging-dti-reference-library/papers/ The CMI Diffusion Tensor Imaging Library]<br />
* [http://nipy.sourceforge.net/nipype/ Nipype ], [http://nipype.blogspot.com.es/p/slides.html congreso] con traspas<br />
* [http://mindboggle.info/# mindboggle]<br />
* RSN: [http://findlab.stanford.edu/functional_ROIs.html functional_ROIs]<br />
[http://www.fmrib.ox.ac.uk/analysis/TFMs/ TFMs]<br />
[http://www.brainnexus.com/resources/resting-state-fmri-templates resting-state-fmri-templates]<br />
[http://www.fmrib.ox.ac.uk/analysis/brainmap+rsns/ FSL:brainmap+rsns]<br />
[http://sourceforge.net/mailarchive/forum.php?thread_name=CADy6Cz%2BiUCdosNhvLGstFuHYALk3xXpc-7PMCeQPRqoEUoxdiA%40mail.gmail.com&forum_name=icatb-discuss icatb-discuss]<br />
* Multimodal data, controls, [https://www.nitrc.org/projects/multimodal here]<br />
<br />
=Data base=<br />
* Alzheimer's disease, OASIS<br />
* Schizophrenia<br />
* Cocainomania<br />
* Schizophrenia [http://insight-journal.org/midas/collection/view/190 NAMIC]<br />
* [http://fcon_1000.projects.nitrc.org/indi/retro/Power2012.html| 2012 Neuroimage Sample]<br />
* [http://mindboggle.info/data.html| Manually labeled human brain image data ]<br />
* Autism [http://fcon_1000.projects.nitrc.org/indi/abide/ Abide]<br />
<br />
=Soft=<br />
* SPM<br />
* FSL<br />
** [http://rwww.fmrib.ox.ac.uk/fsl/melodic/index.html| MELODIC]<br />
** FreeSurfer [http://simnibs.de/installation/installfsandfsl Instalation1]<br />
** FslView [http://neuro.debian.net/blog/2011/2011-12-12_schroot_fslview.html Install with Debian]<br />
* [http://restfmri.net/| REST], DPARSF<br />
* [http://sites.google.com/a/brain-connectivity-toolbox.net/bct/| Brain Connectivity Toolbox]<br />
* GIFT - ICA toolbox<br />
* AFNI<br />
* [http://www.imaios.com/en/e-Anatomy/Head-and-Neck/Brain-MRI-3D| Anatomy of the brain ] de prepago :(<br />
* LIPSIA [http://static.cbs.mpg.de/lipsia/ User Manual], [https://www.cbs.mpg.de/institute/software/lipsia/index.html Leipzig Image Processing and Statistical Inference Algorithms]<br />
* Pattern Recognition Toolbox [http://www.kcl.ac.uk/iop/depts/neuroimaging/research/imaginganalysis/Software/PROBID.aspx Pattern Recognition Toolbox]<br />
* Pipeline toolbox for analyzing brain diffusion images [http://www.readcube.com/articles/10.3389/fnhum.2013.00042 PANDA]<br />
* [http://fieldtrip.fcdonders.nl/download fieldtrip]<br />
* [http://www.cmtk.org/viewer/documentation/users/tutorials/tut_matlabnet.html ConnectomeViewer][https://sites.google.com/site/kittipat/mvpa-for-brain-fmri/convert_matlab_nifti mat -> nii]<br />
* Automated Anatomical labeling<br />
** [http://www.alivelearn.net/xjview8/ xjview8]<br />
** [http://www.fz-juelich.de/inm/inm-1/DE/Forschung/_docs/SPMAnatomyToolbox/SPMAnatomyToolbox_node.html SPMAnatomyToolbox]<br />
** [http://brainder.org/2012/07/30/automatic-atlas-queries-in-fsl/ automatic atlas queries in fsl]<br />
* [http://www.mlnl.cs.ucl.ac.uk/pronto/ Pattern Recognition for Neuroimaging Toolbox (PRoNTo)]<br />
* FC<br />
** [http://econnectome.umn.edu/ econnectome]<br />
** [https://www.humanconnectome.org/connectome/ HCP]<br />
** [http://mialab.mrn.org/software/fnc/ Functional Network Connectivity (FNC) ]<br />
** [https://sites.google.com/site/functionalconnectivitytoolbox/ functional connectivity toolbox]<br />
* diagramas de flujo [http://www.xmind.net/download/linux/ xmind]<br />
* Bayesian spatial model for activation and connectivity [http://web1.sph.emory.edu/bios/CBIS/links.html BSMAC]<br />
* Brain Explorer [http://human.brain-map.org/static/brainexplorer brain-map]<br />
* Normalization<br />
** Advanced Normalization Tool [http://stnava.github.io/ANTs/ ANTs]<br />
* Multi-image Analysis GUI [http://ric.uthscsa.edu/mango/index.html Mango]<br />
<br />
=Grants=<br />
* [http://www.educacion.gob.es/horizontales/servicios/becas-ayudas-subvenciones/para-profesores.html| Beca FPU ] 2009-2013<br />
<br />
* Infornacion general<br />
Ayudas postdoctorales [http://www.ikerkuntza.ehu.es/p273-shginvct/es/contenidos/ayuda_subvencion/vri_doctoresrecientes/es_vri_conv/recientes.html UPV]<br />
<br />
= Estado burocrático de la tesis =<br />
Director - Manuel Graña Romay<br />
; beca concedida desde agosto 2009<br />
; Diploma de Estudios Avanzados en Inteligencia Computacional (DEA), 9 de febrero de 2010<br />
: Estudio de técnicas de análisis de imagen con aplicación a la morfometría cerebral<br />
== subsección ==<br />
<br />
== Friday sessions==<br />
[http://www.ehu.es/ccwintco/index.php/Friday_sessions Friday sessions]<br />
<br />
=tareas pendientes=<br />
<br />
<br />
<br />
1 -Reformato de imagenes[http://www.ehu.es/ccwintco/index.php/Formatos_de_imagen], funcionales, fMRI<br />
<br />
* coger imágenes del administrador de archivos de la cuenta de visitantes del groupware.<br />
<br />
* usar MRIcron[http://www.sph.sc.edu/comd/rorden/mricron/] para pasar de formato DICOM a NIfTI (imagen final 4D)<br />
<br />
* ¿Existe una imagen estructural(MRI (T1))? Si existe convertirla en formato NIfTI (imagen final 3D)<br />
<br />
* Comprobar que se puede trabajar con el SPM5[http://www.fil.ion.ucl.ac.uk/spm/software/spm5/] y las imágenes NIfTI que hemos generado.<br />
<br />
2 -Crear una variable en Matlab que contenga todas las imágenes de fMRI para aplicar nuestros algoritmos de análisis.<br />
<br />
*Funciones a utilizar (dicominfo y dicomread)<br />
<br />
<br />
*[http://cslras.pbworks.com/w/page/27311698/VBM-SPM8 | DARTEL ]<br />
*[http://spanish.madrid.usembassy.gov/es/visas/no-inmigrante/tipos/academicos.html | Embajada E.E.U.U ]<br />
<br />
=Doubt=<br />
* “Open with” (user defined command) Ubuntu 12.10 [http://askubuntu.com/questions/67382/add-custom-command-in-the-open-with-dialog Tweak - file manager]<br />
* NIF de la Uni Q4818001B<br />
* fslorient -setqform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
fslorient -setsform -3 0 0 90 0 3 0 -126 0 0 3 -72 0 0 0 1 sub_3mm_twoseeds_CSF_LHG_xroiregress_sm3.nii<br />
* fsl install debian<br />
sudo apt-get install fsl-complete<br />
nano .bashrc <br />
sudo apt-get install ssh vim gedit-plugins<br />
* not found fsl function<br />
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/ShellSetup<br />
* instalar python [http://alexsavio.github.io/category/python.html python segun Alex]<br />
--<br />
==master==<br />
* [http://www.youtube.com/watch?v=rGyONAoeRJk sMRI video]<br />
* [http://neuroblog.brain-dynamics.es/nuevos-datos-sobre-las-primeras-etapas-de-la-enfermedad-de-alzheimer/ Alzheimer, atrofia]<br />
* [http://hirnforschung.kyb.mpg.de/en/methods/functional-magnetic-resonance-imaging-fmri.html fMRI,stimulus , video]<br />
* [http://www.scholarpedia.org/article/Ensemble_learning Ensemble]<br />
* [http://www.youtube.com/watch?v=IAAQReqDEW8 resting state fMRI, video]<br />
==.==<br />
*[https://team.inria.fr/parietal/team-members/ inria]<br />
*[http://www.mrg.upf.edu/news_events upf]<br />
* [http://www.imtlucca.it/faculty/positions/junior_faculty_recruitment_program.php#brain_imaging lucca]<br />
* [http://www.brainmapping.org/directory/ brainmapping, ucla]<br />
+ [http://labnic.unige.ch/nic/htms/job.html LabNic, geneva]<br />
* Thomas H Mareci.Frank J Bova.</div>
Chyzhyk.darya